Wall clock time and date at job start Tue Mar 31 2020 13:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09009 * 115.55561 * 2 1 4 4 C 1.53077 * 117.49476 * 214.27098 * 2 1 3 5 5 C 1.53002 * 59.98498 * 252.51234 * 4 2 1 6 6 H 1.09001 * 117.49461 * 107.50104 * 5 4 2 7 7 C 1.50700 * 117.49942 * 252.49668 * 5 4 2 8 8 O 1.21283 * 119.99803 * 68.74644 * 7 5 4 9 9 N 1.34777 * 119.99675 * 249.02519 * 7 5 4 10 10 C 1.48190 * 127.80182 * 359.74261 * 9 7 5 11 11 C 1.54517 * 104.63437 * 219.26268 * 10 9 7 12 12 H 1.09004 * 110.37321 * 95.05004 * 11 10 9 13 13 C 1.52998 * 110.37688 * 217.28452 * 11 10 9 14 14 N 1.46497 * 109.47368 * 293.55045 * 13 11 10 15 15 C 1.36942 * 120.00483 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99343 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00078 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00545 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99784 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46937 * 59.99720 * 19 17 15 21 21 H 1.48496 * 109.47068 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47101 * 300.00100 * 19 17 15 23 23 C 1.53778 * 104.78026 * 336.22410 * 11 10 9 24 24 C 1.48265 * 127.79575 * 179.43125 * 9 7 5 25 25 C 1.52586 * 110.27989 * 241.19460 * 23 11 10 26 26 C 1.53211 * 109.19770 * 182.29914 * 25 23 11 27 27 O 1.42907 * 109.34206 * 56.67119 * 26 25 23 28 28 C 1.42924 * 114.21864 * 298.38941 * 27 26 25 29 29 C 1.52591 * 110.26863 * 119.03721 * 23 11 10 30 30 H 1.08996 * 109.47264 * 274.32998 * 1 2 3 31 31 H 1.09007 * 109.47424 * 34.32740 * 1 2 3 32 32 H 1.08999 * 109.47440 * 154.32848 * 1 2 3 33 33 H 1.09008 * 117.51268 * 145.03501 * 4 2 1 34 34 H 1.09000 * 117.49734 * 0.02562 * 4 2 1 35 35 H 1.08996 * 110.40878 * 338.05687 * 10 9 7 36 36 H 1.09010 * 110.40095 * 100.35769 * 10 9 7 37 37 H 1.09006 * 109.47206 * 53.54618 * 13 11 10 38 38 H 1.08996 * 109.47442 * 173.54603 * 13 11 10 39 39 H 0.97000 * 120.00226 * 359.97438 * 14 13 11 40 40 H 0.96993 * 120.00396 * 180.02562 * 18 17 15 41 41 H 1.09000 * 110.42688 * 259.63509 * 24 9 7 42 42 H 1.08999 * 110.42712 * 22.12671 * 24 9 7 43 43 H 1.09003 * 109.52153 * 302.21381 * 25 23 11 44 44 H 1.08999 * 109.51996 * 62.38728 * 25 23 11 45 45 H 1.09002 * 109.48893 * 296.71043 * 26 25 23 46 46 H 1.08995 * 109.49267 * 176.62991 * 26 25 23 47 47 H 1.08999 * 109.49630 * 301.66236 * 28 27 26 48 48 H 1.09003 * 109.51512 * 181.58716 * 28 27 26 49 49 H 1.09000 * 109.51755 * 297.63809 * 29 23 11 50 50 H 1.09001 * 109.52013 * 57.80153 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1221 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8579 1.2692 7 6 3.5292 -0.7806 1.4611 8 8 3.9709 0.3474 1.4024 9 7 4.1974 -1.7314 2.1438 10 6 3.8203 -3.1528 2.3265 11 6 4.1981 -3.4719 3.7904 12 1 3.3323 -3.3493 4.4411 13 6 4.7486 -4.8952 3.9004 14 7 3.6838 -5.8553 3.5994 15 6 3.9432 -7.1994 3.6358 16 1 4.9330 -7.5516 3.8861 17 6 2.9341 -8.1090 3.3511 18 7 1.7277 -7.6798 3.0466 19 14 3.2883 -9.9425 3.4001 20 1 3.7405 -10.3230 4.7624 21 1 2.0535 -10.6944 3.0609 22 1 4.3523 -10.2676 2.4166 23 6 5.2860 -2.4454 4.1475 24 6 5.4790 -1.5928 2.8763 25 6 6.5883 -3.1568 4.5026 26 6 7.6364 -2.1158 4.9090 27 8 7.1309 -1.3334 5.9928 28 6 5.9476 -0.5950 5.6809 29 6 4.8253 -1.5692 5.3087 30 1 -0.3633 0.0776 1.0247 31 1 -0.3634 0.8487 -0.5795 32 1 -0.3634 -0.9262 -0.4452 33 1 3.1719 -0.8770 -1.2680 34 1 1.6113 -1.8597 -1.2677 35 1 2.7493 -3.2847 2.1730 36 1 4.3826 -3.7863 1.6403 37 1 5.5657 -5.0246 3.1907 38 1 5.1159 -5.0655 4.9124 39 1 2.7947 -5.5389 3.3750 40 1 1.0225 -8.3154 2.8480 41 1 6.3033 -1.9799 2.2774 42 1 5.6557 -0.5500 3.1398 43 1 6.4146 -3.8418 5.3325 44 1 6.9461 -3.7150 3.6374 45 1 7.8517 -1.4661 4.0607 46 1 8.5499 -2.6221 5.2210 47 1 6.1450 0.0706 4.8406 48 1 5.6462 -0.0070 6.5478 49 1 3.9393 -1.0078 5.0122 50 1 4.5887 -2.1975 6.1675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186432787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:32 Heat of formation + Delta-G solvation = -46.267736 kcal Electronic energy + Delta-G solvation = -28871.777972 eV Core-core repulsion = 25092.803064 eV Total energy + Delta-G solvation = -3778.974908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97349 -39.48315 -37.58570 -36.55592 -34.65903 -33.41306 -31.73484 -31.14878 -29.28112 -29.01469 -27.23795 -25.61990 -24.62495 -23.78807 -23.23505 -22.28888 -20.93191 -20.53020 -18.99356 -18.50155 -17.53108 -16.96316 -16.10277 -15.95693 -15.91956 -15.72992 -14.93269 -14.73984 -14.47029 -14.44130 -14.14906 -13.74570 -13.48674 -13.36390 -13.17485 -13.00008 -12.61086 -12.46905 -12.29350 -12.25453 -12.01097 -11.80267 -11.54304 -11.51539 -11.28875 -11.10519 -11.00446 -10.83997 -10.68819 -10.45151 -10.25846 -10.20352 -10.09461 -9.98152 -9.76641 -9.73311 -9.39919 -8.91438 -8.65864 -6.98513 -5.82357 -3.11268 2.50890 2.91369 3.40550 3.45509 3.45968 3.73177 3.84043 4.29257 4.47235 4.57352 4.59935 4.62958 4.68581 4.73132 4.97955 5.00774 5.05874 5.11269 5.18781 5.20021 5.32145 5.36302 5.44792 5.51367 5.54026 5.54538 5.61195 5.62876 5.64104 5.67052 5.72126 5.81744 5.86049 5.89954 5.94901 5.96308 6.02907 6.09024 6.14234 6.19918 6.25880 6.31624 6.41303 6.67963 6.76773 7.15387 7.59659 7.64540 8.19299 8.36398 9.47892 10.04018 10.38426 11.40390 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.004663 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.288411 B = 6002.891625 C = 8905.797395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.115 0.885 4 C -0.147 4.147 5 C -0.187 4.187 6 H 0.126 0.874 7 C 0.566 3.434 8 O -0.553 6.553 9 N -0.617 5.617 10 C 0.111 3.889 11 C -0.097 4.097 12 H 0.083 0.917 13 C 0.163 3.837 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.064 4.064 24 C 0.112 3.888 25 C -0.145 4.145 26 C 0.058 3.942 27 O -0.383 6.383 28 C 0.060 3.940 29 C -0.139 4.139 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.027 0.973 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.072 0.928 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 15.434 -1.970 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.133 0.867 4 C -0.184 4.184 5 C -0.208 4.208 6 H 0.144 0.856 7 C 0.355 3.645 8 O -0.432 6.432 9 N -0.350 5.350 10 C -0.011 4.011 11 C -0.117 4.117 12 H 0.102 0.898 13 C 0.035 3.965 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.065 4.065 24 C -0.010 4.010 25 C -0.183 4.183 26 C -0.018 4.018 27 O -0.302 6.302 28 C -0.017 4.017 29 C -0.176 4.176 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.091 0.909 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.570 15.953 -1.871 16.699 hybrid contribution -0.352 -1.247 -0.266 1.323 sum 4.218 14.706 -2.138 15.447 Atomic orbital electron populations 1.21401 0.92215 1.02249 1.02235 1.22377 0.95225 0.94876 1.01665 0.86710 1.23105 1.02996 1.01430 0.90907 1.22276 0.97520 1.05170 0.95835 0.85645 1.19260 0.84254 0.83345 0.77617 1.90662 1.69310 1.20789 1.62389 1.48975 1.23468 1.11014 1.51506 1.22585 1.01730 0.79901 0.96926 1.22302 0.97973 0.95727 0.95697 0.89819 1.20829 0.91944 0.85894 0.97841 1.42373 1.09223 1.02126 1.83997 1.19155 0.95756 0.82585 1.39692 0.91240 1.24714 0.95676 0.97946 1.02383 1.69631 1.01439 1.33401 1.53737 0.86287 0.76821 0.85393 0.77803 1.21252 1.21687 1.21256 1.21129 0.95958 0.95187 0.94263 1.22543 0.86048 1.00753 0.91672 1.22310 0.94150 0.98478 1.03350 1.22683 0.96631 0.92642 0.89869 1.87907 1.42549 1.62267 1.37495 1.22646 0.85012 0.93167 1.00865 1.22139 0.98672 0.98489 0.98322 0.91924 0.91813 0.92145 0.88470 0.87602 0.89968 0.90110 0.95868 0.95534 0.78391 0.93438 0.91040 0.90112 0.89525 0.89906 0.93442 0.88835 0.93199 0.89012 0.90949 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.19 37.15 0.38 -0.72 16 2 C -0.12 -1.35 5.92 -90.58 -0.54 -1.88 16 3 H 0.11 1.38 7.67 -51.92 -0.40 0.98 16 4 C -0.15 -1.59 9.88 -26.69 -0.26 -1.85 16 5 C -0.19 -2.33 5.30 -91.77 -0.49 -2.82 16 6 H 0.13 1.51 7.07 -51.93 -0.37 1.14 16 7 C 0.57 8.43 7.70 -10.98 -0.08 8.35 16 8 O -0.55 -9.72 16.53 5.55 0.09 -9.63 16 9 N -0.62 -8.62 3.32 -169.16 -0.56 -9.18 16 10 C 0.11 1.60 6.13 -2.32 -0.01 1.59 16 11 C -0.10 -1.43 2.77 -89.42 -0.25 -1.68 16 12 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 13 C 0.16 2.94 4.39 -4.04 -0.02 2.92 16 14 N -0.73 -17.21 5.44 -59.91 -0.33 -17.54 16 15 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 19 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.06 -0.79 0.69 -153.86 -0.11 -0.90 16 24 C 0.11 1.43 5.12 -2.41 -0.01 1.42 16 25 C -0.15 -1.71 3.63 -26.83 -0.10 -1.80 16 26 C 0.06 0.62 6.65 37.27 0.25 0.87 16 27 O -0.38 -4.78 10.75 -35.23 -0.38 -5.15 16 28 C 0.06 0.66 6.64 37.26 0.25 0.91 16 29 C -0.14 -1.64 4.68 -26.84 -0.13 -1.77 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 33 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 35 H 0.08 1.20 6.79 -51.93 -0.35 0.84 16 36 H 0.08 1.25 7.81 -51.92 -0.41 0.84 16 37 H 0.02 0.42 6.89 -51.93 -0.36 0.07 16 38 H 0.03 0.50 6.62 -51.93 -0.34 0.15 16 39 H 0.38 9.42 7.52 -40.82 -0.31 9.11 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.07 0.87 7.78 -51.93 -0.40 0.46 16 42 H 0.08 1.06 5.94 -51.93 -0.31 0.76 16 43 H 0.09 1.12 6.60 -51.93 -0.34 0.78 16 44 H 0.08 0.95 6.88 -51.93 -0.36 0.59 16 45 H 0.05 0.47 7.54 -51.93 -0.39 0.08 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.05 0.54 6.53 -51.93 -0.34 0.20 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -31.00 383.58 -9.47 -40.47 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.41 Total: 9.28 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.36 Total: -4.35 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.16 Total: -53.14 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.29 Total: -14.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.00 -9.47 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186432787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.800 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds