Wall clock time and date at job start Tue Mar 31 2020 13:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.45045 * 2 1 4 4 C 1.53043 * 109.46206 * 240.03210 * 2 1 3 5 5 C 1.53625 * 109.24087 * 178.49322 * 4 2 1 6 6 N 1.46928 * 108.54428 * 54.85717 * 5 4 2 7 7 C 1.34773 * 120.62709 * 126.36558 * 6 5 4 8 8 O 1.21352 * 119.99601 * 184.41645 * 7 6 5 9 9 C 1.49443 * 120.00412 * 4.42236 * 7 6 5 10 10 O 1.21356 * 120.00162 * 85.51478 * 9 7 6 11 11 N 1.34779 * 120.00501 * 265.51694 * 9 7 6 12 12 C 1.46932 * 120.62338 * 355.36904 * 11 9 7 13 13 C 1.53189 * 108.77131 * 233.62671 * 12 11 9 14 14 C 1.53039 * 109.31528 * 305.36764 * 13 12 11 15 15 C 1.53033 * 109.53902 * 61.36702 * 14 13 12 16 16 H 1.08997 * 109.50237 * 58.58924 * 15 14 13 17 17 C 1.50709 * 109.49840 * 178.68612 * 15 14 13 18 18 H 1.07998 * 119.99666 * 359.83298 * 17 15 14 19 19 C 1.37875 * 119.99885 * 179.83741 * 17 15 14 20 20 N 1.31517 * 120.00295 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99927 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46963 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47029 * 119.99912 * 21 19 17 24 24 H 1.48499 * 109.47150 * 239.99917 * 21 19 17 25 25 C 1.46917 * 120.63517 * 175.38785 * 11 9 7 26 26 C 1.46925 * 118.73715 * 306.09361 * 6 5 4 27 27 H 1.09003 * 109.58704 * 293.92967 * 26 6 5 28 28 C 1.52999 * 109.58331 * 173.64494 * 26 6 5 29 29 C 1.53049 * 109.45827 * 119.96538 * 2 1 3 30 30 H 1.09000 * 109.47465 * 300.03570 * 1 2 3 31 31 H 1.09002 * 109.46612 * 60.03597 * 1 2 3 32 32 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49504 * 298.56901 * 4 2 1 34 34 H 1.08998 * 109.49807 * 58.63395 * 4 2 1 35 35 H 1.09002 * 109.73853 * 295.11715 * 5 4 2 36 36 H 1.09004 * 109.65900 * 174.54922 * 5 4 2 37 37 H 1.08996 * 109.58633 * 353.41556 * 12 11 9 38 38 H 1.08995 * 109.58488 * 113.84269 * 12 11 9 39 39 H 1.08998 * 109.50271 * 65.31855 * 13 12 11 40 40 H 1.09005 * 109.49885 * 185.41296 * 13 12 11 41 41 H 1.09000 * 109.45886 * 301.34153 * 14 13 12 42 42 H 1.08999 * 109.45984 * 181.38930 * 14 13 12 43 43 H 0.96995 * 120.00448 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.59044 * 246.15843 * 25 11 9 45 45 H 1.08998 * 109.58906 * 6.58446 * 25 11 9 46 46 H 1.09003 * 109.46864 * 63.79724 * 28 26 6 47 47 H 1.09007 * 109.46869 * 183.78602 * 28 26 6 48 48 H 1.08996 * 109.47900 * 303.79194 * 28 26 6 49 49 H 1.09003 * 109.49590 * 61.43307 * 29 2 1 50 50 H 1.09001 * 109.52404 * 301.35590 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5756 -0.6849 -1.2641 6 7 4.0678 -1.2489 0.0002 7 6 4.9620 -2.2573 0.0001 8 8 5.3003 -2.7682 1.0476 9 6 5.5370 -2.7462 -1.2897 10 8 6.5070 -2.1964 -1.7687 11 7 4.9782 -3.7977 -1.9211 12 6 3.8676 -4.5367 -1.3053 13 6 4.2290 -6.0247 -1.2630 14 6 4.5936 -6.4973 -2.6722 15 6 5.8117 -5.7185 -3.1740 16 1 6.6474 -5.8705 -2.4910 17 6 6.1897 -6.2070 -4.5487 18 1 5.6201 -6.9961 -5.0169 19 6 7.2627 -5.6465 -5.2086 20 7 7.9561 -4.6853 -4.6387 21 14 7.7317 -6.2525 -6.9122 22 1 6.8010 -7.3329 -7.3268 23 1 7.6471 -5.1278 -7.8783 24 1 9.1200 -6.7788 -6.8856 25 6 5.4683 -4.2269 -3.2380 26 6 3.5713 -0.6886 1.2644 27 1 3.9163 0.3401 1.3687 28 6 4.0910 -1.5252 2.4352 29 6 2.0398 -0.7208 1.2502 30 1 -0.3634 0.5144 0.8896 31 1 -0.3632 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7557 -1.2383 34 1 1.6568 -0.2211 -2.1398 35 1 3.9189 0.3450 -1.3630 36 1 3.9487 -1.2784 -2.0988 37 1 3.7034 -4.1716 -0.2915 38 1 2.9631 -4.3970 -1.8972 39 1 5.0796 -6.1739 -0.5979 40 1 3.3759 -6.5961 -0.8971 41 1 3.7513 -6.3252 -3.3422 42 1 4.8274 -7.5617 -2.6492 43 1 8.7112 -4.2912 -5.1027 44 1 4.6942 -4.0620 -3.9875 45 1 6.3602 -3.6575 -3.4994 46 1 5.1781 -1.4566 2.4765 47 1 3.6677 -1.1489 3.3667 48 1 3.7976 -2.5657 2.2970 49 1 1.6977 -1.7557 1.2384 50 1 1.6571 -0.2213 2.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327384256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:55 Heat of formation + Delta-G solvation = -71.306595 kcal Electronic energy + Delta-G solvation = -29611.976431 eV Core-core repulsion = 25831.915757 eV Total energy + Delta-G solvation = -3780.060674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96999 -39.06711 -37.64937 -36.73412 -34.13005 -33.46740 -32.87614 -31.82046 -29.88371 -28.89957 -26.87848 -25.88579 -25.06114 -23.69305 -23.14734 -21.89202 -21.39312 -20.41481 -19.40719 -18.22975 -17.31924 -16.51909 -16.24497 -16.06892 -15.27659 -15.02552 -14.79686 -14.54999 -14.49496 -14.05935 -13.84169 -13.75419 -13.37416 -13.24924 -12.85946 -12.73412 -12.65703 -12.57117 -12.35600 -12.21123 -12.07825 -11.93064 -11.73200 -11.26219 -11.19378 -11.04545 -10.95427 -10.74774 -10.68241 -10.53876 -10.44506 -10.30017 -10.26960 -9.95178 -9.17242 -9.11598 -8.73138 -8.62754 -8.47652 -7.90185 -6.02174 -4.11417 2.41238 2.51461 3.02670 3.28825 3.37300 3.40133 3.70879 4.38977 4.42395 4.45195 4.46502 4.63669 4.80833 5.03291 5.04228 5.17434 5.25653 5.28691 5.32049 5.34603 5.43164 5.45572 5.49430 5.61349 5.62799 5.68740 5.72680 5.75318 5.83869 5.87993 5.93207 6.06253 6.15009 6.18693 6.24997 6.27751 6.53986 6.58521 6.61451 6.79439 6.93041 7.01509 7.12058 7.19719 7.56744 7.81743 7.91226 8.01001 8.06685 8.32294 8.52605 8.93039 9.54575 11.03099 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.003563 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.677135 B = 7857.249770 C = 7967.532905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.106 3.894 6 N -0.596 5.596 7 C 0.519 3.481 8 O -0.512 6.512 9 C 0.503 3.497 10 O -0.511 6.511 11 N -0.587 5.587 12 C 0.109 3.891 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.038 3.962 16 H 0.031 0.969 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.111 3.889 26 C 0.142 3.858 27 H 0.073 0.927 28 C -0.139 4.139 29 C -0.125 4.125 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.263 0.737 44 H 0.049 0.951 45 H 0.124 0.876 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 9.441 10.205 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.333 5.333 7 C 0.303 3.697 8 O -0.387 6.387 9 C 0.284 3.716 10 O -0.386 6.386 11 N -0.322 5.322 12 C -0.014 4.014 13 C -0.171 4.171 14 C -0.148 4.148 15 C 0.019 3.981 16 H 0.049 0.951 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.009 4.009 26 C 0.040 3.960 27 H 0.091 0.909 28 C -0.196 4.196 29 C -0.163 4.163 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.142 0.858 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.180 9.569 10.463 20.772 hybrid contribution 0.284 -0.248 -0.963 1.034 sum -14.896 9.321 9.500 19.976 Atomic orbital electron populations 1.21811 0.94845 1.01963 1.01670 1.21146 0.95825 0.99585 0.94679 0.90960 1.22062 0.94459 1.01802 0.98310 1.21896 0.94422 0.99871 0.85534 1.48175 1.42246 1.35233 1.07600 1.20746 0.78482 0.79867 0.90639 1.90820 1.59321 1.57403 1.31197 1.20140 0.84934 0.82220 0.84290 1.90832 1.25229 1.58055 1.64446 1.48615 1.33631 1.28727 1.21187 1.21680 0.89269 0.93283 0.97205 1.21929 1.01066 0.94237 0.99872 1.21629 0.99850 0.99959 0.93326 1.18990 0.92442 0.89775 0.96869 0.95099 1.21105 1.13667 1.20056 1.01035 0.92206 1.25065 0.96039 0.94938 0.98014 1.69891 1.19309 1.24968 1.37591 0.86529 0.78406 0.78702 0.84329 1.19773 1.20968 1.20999 1.22447 1.00450 1.00064 0.77927 1.21365 0.93561 0.97642 0.83480 0.90928 1.22236 1.02504 1.00292 0.94600 1.22085 0.94499 1.01648 0.98060 0.92688 0.92574 0.92587 0.91083 0.90347 0.90764 0.89405 0.91426 0.91619 0.91824 0.92016 0.93096 0.92803 0.92637 0.93289 0.85772 0.90747 0.93735 0.90976 0.91202 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.71 2.68 -90.57 -0.24 -0.95 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -1.13 5.38 -26.38 -0.14 -1.27 16 5 C 0.11 1.23 6.35 -3.48 -0.02 1.21 16 6 N -0.60 -8.06 2.97 -165.46 -0.49 -8.55 16 7 C 0.52 9.15 5.51 -11.59 -0.06 9.08 16 8 O -0.51 -9.81 12.31 5.49 0.07 -9.74 16 9 C 0.50 10.49 5.49 -11.59 -0.06 10.43 16 10 O -0.51 -12.69 16.51 5.49 0.09 -12.60 16 11 N -0.59 -11.77 2.97 -173.28 -0.51 -12.28 16 12 C 0.11 1.77 6.33 -3.71 -0.02 1.74 16 13 C -0.13 -2.22 6.08 -26.61 -0.16 -2.39 16 14 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 15 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 16 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.52 -13.86 8.56 -34.44 -0.29 -14.15 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.88 -25.42 11.39 55.43 0.63 -24.79 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.11 2.60 5.41 -3.71 -0.02 2.58 16 26 C 0.14 1.55 3.49 -67.60 -0.24 1.32 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 C -0.14 -1.69 7.59 37.16 0.28 -1.41 16 29 C -0.12 -1.05 4.65 -26.61 -0.12 -1.17 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.21 6.36 -51.93 -0.33 0.88 16 37 H 0.07 1.03 6.24 -51.93 -0.32 0.71 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.12 3.43 5.11 -51.93 -0.27 3.16 16 46 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 47 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 48 H 0.07 0.99 6.79 -51.93 -0.35 0.64 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -31.28 380.20 -9.49 -40.77 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.77 Total: 1.05 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.21 Total: 4.46 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.37 Total: -45.63 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.16 Total: -22.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.28 -9.49 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327384256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.538 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds