Wall clock time and date at job start Tue Mar 31 2020 14:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00163 * 2 1 4 4 C 1.52995 * 109.47446 * 125.00387 * 3 2 1 5 5 C 1.53001 * 109.47630 * 179.97438 * 4 3 2 6 6 C 1.52991 * 109.47303 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47475 * 305.00058 * 6 5 4 8 8 C 1.53003 * 109.47050 * 185.00270 * 6 5 4 9 9 N 1.46502 * 109.47249 * 65.00289 * 6 5 4 10 10 C 1.34782 * 120.00166 * 205.00004 * 9 6 5 11 11 O 1.21350 * 119.99528 * 359.97438 * 10 9 6 12 12 C 1.49446 * 120.00084 * 179.97438 * 10 9 6 13 13 O 1.21356 * 119.99803 * 353.37756 * 12 10 9 14 14 N 1.34768 * 120.00057 * 173.37736 * 12 10 9 15 15 C 1.46923 * 120.63140 * 353.06161 * 14 12 10 16 16 C 1.53197 * 108.77603 * 126.41596 * 15 14 12 17 17 C 1.53036 * 109.34037 * 54.62030 * 16 15 14 18 18 C 1.53043 * 109.53781 * 298.68543 * 17 16 15 19 19 H 1.09000 * 109.49772 * 301.34791 * 18 17 16 20 20 C 1.50699 * 109.49861 * 181.28187 * 18 17 16 21 21 H 1.08009 * 119.99826 * 0.06421 * 20 18 17 22 22 C 1.37874 * 120.00391 * 180.34183 * 20 18 17 23 23 N 1.31511 * 119.99935 * 359.72505 * 22 20 18 24 24 Si 1.86803 * 120.00371 * 179.72468 * 22 20 18 25 25 H 1.48501 * 109.46987 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47049 * 119.99668 * 24 22 20 27 27 H 1.48495 * 109.47162 * 239.99991 * 24 22 20 28 28 C 1.46927 * 120.63303 * 173.08900 * 14 12 10 29 29 H 1.07996 * 120.00169 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99895 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00011 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46920 * 5.00352 * 3 2 1 33 33 H 1.08997 * 109.47042 * 245.00728 * 3 2 1 34 34 H 1.08999 * 109.47090 * 60.00069 * 4 3 2 35 35 H 1.09003 * 109.46966 * 300.00535 * 4 3 2 36 36 H 1.08999 * 109.46784 * 59.99935 * 5 4 3 37 37 H 1.08997 * 109.46994 * 300.00423 * 5 4 3 38 38 H 1.08995 * 109.47045 * 59.99993 * 8 6 5 39 39 H 1.09000 * 109.47225 * 180.02562 * 8 6 5 40 40 H 1.08997 * 109.46876 * 299.99734 * 8 6 5 41 41 H 0.96996 * 120.00059 * 24.99627 * 9 6 5 42 42 H 1.08998 * 109.59171 * 246.19792 * 15 14 12 43 43 H 1.09003 * 109.58922 * 6.48999 * 15 14 12 44 44 H 1.08995 * 109.50150 * 174.58993 * 16 15 14 45 45 H 1.09009 * 109.49617 * 294.68452 * 16 15 14 46 46 H 1.08997 * 109.49188 * 178.64856 * 17 16 15 47 47 H 1.09001 * 109.43006 * 58.68768 * 17 16 15 48 48 H 0.97000 * 120.00590 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.59192 * 113.79627 * 28 14 12 50 50 H 1.08998 * 109.70190 * 353.44355 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.8006 2.6578 1.1812 6 6 4.7717 2.6860 2.3630 7 1 4.2246 2.5004 3.2874 8 6 5.4463 4.0573 2.4363 9 7 5.7911 1.6494 2.1824 10 6 6.4271 1.1356 3.2539 11 8 6.1557 1.5321 4.3682 12 6 7.4666 0.0778 3.0696 13 8 7.6536 -0.4044 1.9718 14 7 8.1962 -0.3407 4.1226 15 6 8.0902 0.3353 5.4228 16 6 7.7728 -0.7095 6.4973 17 6 8.8245 -1.8203 6.4504 18 6 8.7844 -2.5056 5.0826 19 1 7.7889 -2.9144 4.9095 20 6 9.7986 -3.6197 5.0483 21 1 10.4102 -3.8202 5.9157 22 6 9.9499 -4.3795 3.9077 23 7 9.2053 -4.1354 2.8515 24 14 11.2124 -5.7556 3.8626 25 1 11.9164 -5.8244 5.1683 26 1 10.5278 -7.0470 3.6001 27 1 12.1969 -5.4888 2.7835 28 6 9.1133 -1.4811 3.9921 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 3.7400 0.5066 1.0919 35 1 2.4774 1.2355 2.1129 36 1 3.0960 3.4846 1.2706 37 1 4.3583 2.7549 0.2497 38 1 4.6879 4.8285 2.5707 39 1 6.1385 4.0773 3.2780 40 1 5.9934 4.2428 1.5120 41 1 6.0082 1.3327 1.2917 42 1 9.0348 0.8257 5.6579 43 1 7.2926 1.0774 5.3849 44 1 7.7863 -0.2371 7.4795 45 1 6.7865 -1.1348 6.3112 46 1 8.6147 -2.5529 7.2298 47 1 9.8131 -1.3908 6.6126 48 1 9.3114 -4.6701 2.0492 49 1 10.1414 -1.1388 4.1104 50 1 8.9917 -1.9401 3.0110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328939322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:30 Heat of formation + Delta-G solvation = -60.987303 kcal Electronic energy + Delta-G solvation = -27990.688371 eV Core-core repulsion = 24211.075175 eV Total energy + Delta-G solvation = -3779.613196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56820 -38.59726 -37.15647 -36.77663 -35.39854 -33.30089 -32.31353 -31.68729 -30.48757 -29.72241 -26.65609 -25.92708 -24.98677 -23.28297 -22.05235 -21.77212 -20.90018 -20.25585 -19.91608 -18.72781 -17.28772 -16.84039 -16.22804 -15.82122 -15.48161 -15.37848 -14.82860 -14.65909 -14.53916 -14.29368 -13.79585 -13.69099 -13.42003 -13.35180 -13.18882 -12.81260 -12.59377 -12.50657 -12.25391 -12.07008 -11.93146 -11.75709 -11.69076 -11.34553 -11.15859 -10.99637 -10.91118 -10.80667 -10.66771 -10.44099 -10.27446 -10.03524 -9.87392 -9.55299 -9.21894 -9.19220 -9.10931 -8.50682 -8.40207 -7.80859 -6.01993 -4.09981 1.82368 2.07047 2.73964 3.29410 3.37688 3.41118 3.67336 3.98845 4.33619 4.41978 4.61484 4.68544 4.75235 4.91511 4.97483 5.11392 5.26194 5.28700 5.32361 5.34011 5.50978 5.53228 5.59369 5.67512 5.71155 5.72044 5.77444 5.89186 5.95800 6.02174 6.10285 6.16677 6.29260 6.40717 6.42656 6.55500 6.61814 6.65573 6.77892 6.88341 7.00559 7.07094 7.19666 7.29275 7.60317 7.84105 7.96118 8.03540 8.19043 8.36199 8.59963 8.94327 9.55584 11.03612 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003092 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.357262 B = 9053.279133 C =10364.055354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.126 4.126 6 C 0.138 3.862 7 H 0.092 0.908 8 C -0.164 4.164 9 N -0.698 5.698 10 C 0.513 3.487 11 O -0.515 6.515 12 C 0.493 3.507 13 O -0.526 6.526 14 N -0.567 5.567 15 C 0.050 3.950 16 C -0.127 4.127 17 C -0.113 4.113 18 C 0.040 3.960 19 H 0.029 0.971 20 C -0.518 4.518 21 H 0.060 0.940 22 C 0.062 3.938 23 N -0.883 5.883 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.108 3.892 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.412 0.588 42 H 0.053 0.947 43 H 0.144 0.856 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.263 0.737 49 H 0.047 0.953 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 15.705 -3.546 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.158 4.158 5 C -0.164 4.164 6 C 0.034 3.966 7 H 0.110 0.890 8 C -0.222 4.222 9 N -0.352 5.352 10 C 0.296 3.704 11 O -0.393 6.393 12 C 0.274 3.726 13 O -0.403 6.403 14 N -0.299 5.299 15 C -0.072 4.072 16 C -0.165 4.165 17 C -0.151 4.151 18 C 0.021 3.979 19 H 0.047 0.953 20 C -0.556 4.556 21 H 0.078 0.922 22 C -0.141 4.141 23 N -0.520 5.520 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.012 4.012 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.248 0.752 42 H 0.072 0.928 43 H 0.160 0.840 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.818 15.660 -3.517 20.540 hybrid contribution 0.864 -1.069 -0.416 1.436 sum -11.954 14.591 -3.933 19.268 Atomic orbital electron populations 1.23828 0.95985 1.01682 1.02221 1.23044 0.96090 0.98852 0.98922 1.20774 0.98122 0.95248 0.98941 1.21590 0.98037 0.97716 0.98420 1.21922 0.97904 0.98604 0.97999 1.21094 0.88472 0.87144 0.99920 0.89014 1.22186 1.01386 0.95998 1.02668 1.45955 1.39331 1.39672 1.10199 1.20769 0.82625 0.82332 0.84681 1.90290 1.64400 1.61353 1.23260 1.19801 0.83096 0.84037 0.85619 1.90755 1.67882 1.57473 1.24202 1.48431 1.40084 1.31838 1.09505 1.23079 1.04407 0.97235 0.82440 1.21851 1.00151 0.97196 0.97334 1.21667 0.96994 0.96316 1.00130 1.18977 0.97903 0.92209 0.88787 0.95281 1.21138 1.20640 1.14649 0.99203 0.92204 1.25061 0.95966 0.97348 0.95725 1.69879 1.38979 1.39829 1.03356 0.86515 0.81378 0.81982 0.78023 1.19772 1.20992 1.20964 1.22473 0.89201 0.83275 1.06212 0.88624 0.88784 0.87214 0.91651 0.90920 0.91158 0.91618 0.90199 0.91041 0.91497 0.91820 0.92292 0.75187 0.92834 0.83963 0.92318 0.92367 0.93090 0.93272 0.92709 0.93454 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 14.32 29.02 0.42 -1.22 16 2 C -0.15 -1.34 9.52 -36.03 -0.34 -1.68 16 3 C -0.09 -0.73 5.66 -27.89 -0.16 -0.88 16 4 C -0.12 -1.03 5.08 -26.73 -0.14 -1.17 16 5 C -0.13 -0.92 4.75 -26.74 -0.13 -1.05 16 6 C 0.14 1.33 2.57 -67.93 -0.17 1.16 16 7 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 8 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 9 N -0.70 -8.72 4.52 -54.24 -0.25 -8.97 16 10 C 0.51 8.35 7.74 -11.58 -0.09 8.26 16 11 O -0.52 -8.69 12.77 5.50 0.07 -8.62 16 12 C 0.49 9.98 7.74 -11.59 -0.09 9.89 16 13 O -0.53 -11.95 15.95 5.49 0.09 -11.86 16 14 N -0.57 -11.94 2.97 -173.27 -0.51 -12.45 16 15 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 16 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 17 C -0.11 -2.37 5.11 -26.69 -0.14 -2.50 16 18 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.52 -14.10 8.57 -34.44 -0.30 -14.39 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.88 -25.50 11.38 55.43 0.63 -24.87 16 24 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.11 2.65 5.38 -3.71 -0.02 2.63 16 29 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.09 0.67 7.84 -52.49 -0.41 0.26 16 31 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.06 0.45 7.79 -51.93 -0.40 0.04 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.41 4.92 8.09 -40.82 -0.33 4.59 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.14 2.48 3.78 -56.75 -0.21 2.27 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 49 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.12 3.45 5.17 -51.93 -0.27 3.18 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -30.40 398.43 -9.01 -39.41 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.73 Total: 6.35 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.29 Total: -1.19 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.13 Total: -46.29 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.16 Total: -20.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.40 -9.01 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328939322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.582 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds