Wall clock time and date at job start Tue Mar 31 2020 14:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00163 * 2 1 4 4 C 1.52995 * 109.47446 * 125.00387 * 3 2 1 5 5 C 1.53001 * 109.47630 * 179.97438 * 4 3 2 6 6 C 1.52991 * 109.47303 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47475 * 305.00058 * 6 5 4 8 8 C 1.53003 * 109.47050 * 185.00270 * 6 5 4 9 9 N 1.46502 * 109.47249 * 65.00289 * 6 5 4 10 10 C 1.34782 * 120.00166 * 205.00004 * 9 6 5 11 11 O 1.21350 * 119.99528 * 359.97438 * 10 9 6 12 12 C 1.49446 * 120.00084 * 179.97438 * 10 9 6 13 13 O 1.21356 * 119.99803 * 353.37756 * 12 10 9 14 14 N 1.34768 * 120.00057 * 173.37736 * 12 10 9 15 15 C 1.46923 * 120.63140 * 353.06161 * 14 12 10 16 16 C 1.53197 * 108.77603 * 126.41596 * 15 14 12 17 17 C 1.53036 * 109.34037 * 54.62030 * 16 15 14 18 18 C 1.53043 * 109.53781 * 298.68543 * 17 16 15 19 19 H 1.09000 * 109.49772 * 301.34791 * 18 17 16 20 20 C 1.50699 * 109.49861 * 181.28187 * 18 17 16 21 21 H 1.08009 * 119.99826 * 0.06421 * 20 18 17 22 22 C 1.37874 * 120.00391 * 180.34183 * 20 18 17 23 23 N 1.31511 * 119.99935 * 359.72505 * 22 20 18 24 24 Si 1.86803 * 120.00371 * 179.72468 * 22 20 18 25 25 H 1.48501 * 109.46987 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47049 * 119.99668 * 24 22 20 27 27 H 1.48495 * 109.47162 * 239.99991 * 24 22 20 28 28 C 1.46927 * 120.63303 * 173.08900 * 14 12 10 29 29 H 1.07996 * 120.00169 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99895 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00011 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46920 * 5.00352 * 3 2 1 33 33 H 1.08997 * 109.47042 * 245.00728 * 3 2 1 34 34 H 1.08999 * 109.47090 * 60.00069 * 4 3 2 35 35 H 1.09003 * 109.46966 * 300.00535 * 4 3 2 36 36 H 1.08999 * 109.46784 * 59.99935 * 5 4 3 37 37 H 1.08997 * 109.46994 * 300.00423 * 5 4 3 38 38 H 1.08995 * 109.47045 * 59.99993 * 8 6 5 39 39 H 1.09000 * 109.47225 * 180.02562 * 8 6 5 40 40 H 1.08997 * 109.46876 * 299.99734 * 8 6 5 41 41 H 0.96996 * 120.00059 * 24.99627 * 9 6 5 42 42 H 1.08998 * 109.59171 * 246.19792 * 15 14 12 43 43 H 1.09003 * 109.58922 * 6.48999 * 15 14 12 44 44 H 1.08995 * 109.50150 * 174.58993 * 16 15 14 45 45 H 1.09009 * 109.49617 * 294.68452 * 16 15 14 46 46 H 1.08997 * 109.49188 * 178.64856 * 17 16 15 47 47 H 1.09001 * 109.43006 * 58.68768 * 17 16 15 48 48 H 0.97000 * 120.00590 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.59192 * 113.79627 * 28 14 12 50 50 H 1.08998 * 109.70190 * 353.44355 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.8006 2.6578 1.1812 6 6 4.7717 2.6860 2.3630 7 1 4.2246 2.5004 3.2874 8 6 5.4463 4.0573 2.4363 9 7 5.7911 1.6494 2.1824 10 6 6.4271 1.1356 3.2539 11 8 6.1557 1.5321 4.3682 12 6 7.4666 0.0778 3.0696 13 8 7.6536 -0.4044 1.9718 14 7 8.1962 -0.3407 4.1226 15 6 8.0902 0.3353 5.4228 16 6 7.7728 -0.7095 6.4973 17 6 8.8245 -1.8203 6.4504 18 6 8.7844 -2.5056 5.0826 19 1 7.7889 -2.9144 4.9095 20 6 9.7986 -3.6197 5.0483 21 1 10.4102 -3.8202 5.9157 22 6 9.9499 -4.3795 3.9077 23 7 9.2053 -4.1354 2.8515 24 14 11.2124 -5.7556 3.8626 25 1 11.9164 -5.8244 5.1683 26 1 10.5278 -7.0470 3.6001 27 1 12.1969 -5.4888 2.7835 28 6 9.1133 -1.4811 3.9921 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 3.7400 0.5066 1.0919 35 1 2.4774 1.2355 2.1129 36 1 3.0960 3.4846 1.2706 37 1 4.3583 2.7549 0.2497 38 1 4.6879 4.8285 2.5707 39 1 6.1385 4.0773 3.2780 40 1 5.9934 4.2428 1.5120 41 1 6.0082 1.3327 1.2917 42 1 9.0348 0.8257 5.6579 43 1 7.2926 1.0774 5.3849 44 1 7.7863 -0.2371 7.4795 45 1 6.7865 -1.1348 6.3112 46 1 8.6147 -2.5529 7.2298 47 1 9.8131 -1.3908 6.6126 48 1 9.3114 -4.6701 2.0492 49 1 10.1414 -1.1388 4.1104 50 1 8.9917 -1.9401 3.0110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328939322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:29 Heat of formation + Delta-G solvation = -78.678257 kcal Electronic energy + Delta-G solvation = -27991.455508 eV Core-core repulsion = 24211.075175 eV Total energy + Delta-G solvation = -3780.380333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98007 -40.00458 -38.53964 -38.03876 -36.24615 -35.20753 -33.53904 -33.13481 -31.57876 -31.27290 -27.69532 -27.25820 -26.80926 -24.66796 -23.52564 -22.86864 -21.80534 -21.65502 -20.67953 -20.32935 -18.88554 -18.25417 -17.94289 -17.15657 -16.84012 -16.51583 -16.37989 -15.93616 -15.57300 -15.46325 -15.33346 -14.88309 -14.81595 -14.53096 -14.46023 -14.09899 -14.02369 -13.80924 -13.51064 -13.21117 -13.07429 -12.91508 -12.79395 -12.59944 -12.45546 -12.37494 -12.31127 -12.17121 -11.85608 -11.71856 -11.59518 -11.58429 -11.48261 -11.15921 -10.99253 -10.56452 -10.34257 -10.14768 -9.97580 -9.54683 -8.13241 -6.29725 0.37477 1.37117 1.40707 1.41571 1.43202 1.53737 2.17430 2.40590 2.60628 3.15174 3.33550 3.66171 3.94482 4.02623 4.14890 4.18316 4.23417 4.29690 4.33663 4.40303 4.55744 4.61024 4.62586 4.72418 4.76398 4.77888 4.81007 4.86871 4.95467 4.99772 5.04891 5.08776 5.09471 5.16751 5.23004 5.25175 5.30872 5.35881 5.42737 5.43895 5.55588 5.60487 5.77598 5.83324 5.89968 5.92961 6.04733 6.29250 6.46084 6.76948 6.84029 7.00499 7.40172 8.91005 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003092 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.357262 B = 9053.279133 C =10364.055354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.088 4.088 4 C -0.119 4.119 5 C -0.117 4.117 6 C 0.134 3.866 7 H 0.083 0.917 8 C -0.159 4.159 9 N -0.680 5.680 10 C 0.522 3.478 11 O -0.520 6.520 12 C 0.483 3.517 13 O -0.560 6.560 14 N -0.575 5.575 15 C 0.049 3.951 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.534 4.534 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.915 5.915 24 Si 0.960 3.040 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.121 3.879 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.070 0.930 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.261 0.739 49 H 0.043 0.957 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 17.844 -2.966 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.190 4.190 3 C -0.125 4.125 4 C -0.157 4.157 5 C -0.154 4.154 6 C 0.031 3.969 7 H 0.101 0.899 8 C -0.217 4.217 9 N -0.333 5.333 10 C 0.303 3.697 11 O -0.399 6.399 12 C 0.266 3.734 13 O -0.440 6.440 14 N -0.306 5.306 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.145 4.145 18 C 0.020 3.980 19 H 0.006 0.994 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.554 5.554 24 Si 0.785 3.215 25 H -0.186 1.186 26 H -0.208 1.208 27 H -0.207 1.207 28 C 0.000 4.000 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.173 0.827 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.517 17.835 -2.927 22.569 hybrid contribution 0.993 -1.728 -0.633 2.091 sum -12.524 16.107 -3.559 20.711 Atomic orbital electron populations 1.23999 0.95786 1.02530 1.00992 1.23147 0.96616 0.99078 1.00133 1.20744 0.98095 0.95061 0.98621 1.21556 0.97826 0.97731 0.98571 1.21902 0.97641 0.98606 0.97271 1.21391 0.87986 0.86714 1.00766 0.89912 1.22155 1.01713 0.95607 1.02265 1.46009 1.38698 1.39292 1.09253 1.19913 0.82348 0.81867 0.85585 1.90261 1.64700 1.61516 1.23472 1.20585 0.83410 0.84574 0.84840 1.90724 1.68872 1.58871 1.25490 1.48462 1.39796 1.31225 1.11145 1.23320 1.05809 0.97162 0.80782 1.21817 0.98278 0.96301 0.99404 1.21564 0.98538 0.97096 0.97271 1.18911 0.95070 0.92416 0.91645 0.99380 1.21513 1.20963 1.15490 0.99297 0.91923 1.25891 0.97851 0.99807 0.95343 1.70056 1.40623 1.40849 1.03858 0.85470 0.78863 0.78770 0.78352 1.18616 1.20776 1.20676 1.21932 0.89751 0.84440 1.03923 0.88436 0.87330 0.88644 0.89993 0.90412 0.93583 0.92400 0.87468 0.89876 0.88919 0.93741 0.91496 0.74809 0.91210 0.82721 0.88381 0.93639 0.92804 0.92428 0.92962 0.93884 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 14.32 67.78 0.97 -2.02 16 2 C -0.17 -2.98 9.52 25.65 0.24 -2.73 16 3 C -0.09 -1.23 5.66 29.85 0.17 -1.06 16 4 C -0.12 -1.92 5.08 30.59 0.16 -1.76 16 5 C -0.12 -1.40 4.75 30.59 0.15 -1.25 16 6 C 0.13 2.33 2.57 44.99 0.12 2.45 16 7 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 8 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 9 N -0.68 -16.56 4.52 -443.87 -2.01 -18.57 16 10 C 0.52 16.89 7.74 87.27 0.68 17.57 16 11 O -0.52 -17.04 12.77 -3.25 -0.04 -17.08 16 12 C 0.48 20.12 7.74 87.27 0.68 20.80 16 13 O -0.56 -26.69 15.95 -3.27 -0.05 -26.74 16 14 N -0.58 -24.74 2.97 -820.48 -2.44 -27.17 16 15 C 0.05 1.73 6.27 86.36 0.54 2.27 16 16 C -0.12 -4.16 6.08 30.67 0.19 -3.98 16 17 C -0.11 -4.42 5.11 30.62 0.16 -4.26 16 18 C 0.04 2.01 2.25 -11.46 -0.03 1.99 16 19 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 20 C -0.53 -29.73 8.57 25.60 0.22 -29.51 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 22 C 0.01 0.59 5.30 84.65 0.45 1.04 16 23 N -0.92 -55.09 11.38 21.45 0.24 -54.85 16 24 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 28 C 0.12 6.19 5.38 86.36 0.46 6.65 16 29 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.11 1.32 7.84 -2.91 -0.02 1.30 16 31 H 0.10 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.08 0.88 7.79 -2.39 -0.02 0.87 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.96 7.75 -2.39 -0.02 0.94 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.41 9.80 8.09 -92.71 -0.75 9.05 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.16 5.15 3.78 -78.73 -0.30 4.85 16 44 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.08 5.01 5.17 -2.39 -0.01 5.00 16 Total: -1.00 -68.96 398.43 3.43 -65.53 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.13 Total: 28.06 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.83 Total: 4.54 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -4.20 Total: -100.59 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.09 Total: -43.82 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.96 3.43 -65.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328939322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.144 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds