Wall clock time and date at job start Tue Mar 31 2020 13:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.29657 * 2 1 4 4 C 1.55331 * 110.33801 * 237.84416 * 2 1 3 5 5 C 1.53917 * 102.08548 * 218.91796 * 4 2 1 6 6 H 1.08996 * 110.99975 * 281.33883 * 5 4 2 7 7 C 1.52362 * 113.83135 * 155.33637 * 5 4 2 8 8 C 1.52296 * 108.29009 * 185.32320 * 7 5 4 9 9 C 1.52825 * 110.74361 * 55.92068 * 8 7 5 10 10 H 1.08999 * 109.20885 * 186.16526 * 9 8 7 11 11 C 1.50702 * 109.23867 * 66.74936 * 9 8 7 12 12 O 1.21286 * 119.99968 * 270.93174 * 11 9 8 13 13 N 1.34770 * 120.00011 * 90.93194 * 11 9 8 14 14 C 1.47027 * 125.65059 * 355.01577 * 13 11 9 15 15 C 1.54317 * 107.40376 * 178.82510 * 14 13 11 16 16 C 1.55406 * 102.82838 * 337.97590 * 15 14 13 17 17 O 1.42898 * 110.92297 * 277.25167 * 16 15 14 18 18 C 1.50705 * 111.03640 * 153.47706 * 16 15 14 19 19 H 1.08005 * 119.99394 * 247.68023 * 18 16 15 20 20 C 1.37874 * 120.00458 * 67.67887 * 18 16 15 21 21 N 1.31514 * 119.99520 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00037 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47295 * 90.00186 * 22 20 18 24 24 H 1.48499 * 109.47118 * 210.00155 * 22 20 18 25 25 H 1.48504 * 109.47265 * 330.00110 * 22 20 18 26 26 C 1.47428 * 125.65091 * 174.96853 * 13 11 9 27 27 C 1.53627 * 110.65179 * 306.44804 * 9 8 7 28 28 N 1.45540 * 107.86681 * 57.12963 * 27 9 8 29 29 C 1.46334 * 117.21080 * 174.47665 * 28 27 9 30 30 H 1.09006 * 109.46718 * 182.15577 * 1 2 3 31 31 H 1.08999 * 109.46934 * 302.15184 * 1 2 3 32 32 H 1.08997 * 109.47224 * 62.16182 * 1 2 3 33 33 H 1.09007 * 110.90747 * 100.72216 * 4 2 1 34 34 H 1.09002 * 110.90821 * 337.11908 * 4 2 1 35 35 H 1.08996 * 109.83535 * 304.28391 * 7 5 4 36 36 H 1.09001 * 109.83149 * 65.23768 * 7 5 4 37 37 H 1.08994 * 108.92775 * 295.74970 * 8 7 5 38 38 H 1.08999 * 109.42493 * 176.40992 * 8 7 5 39 39 H 1.09000 * 109.87801 * 298.31717 * 14 13 11 40 40 H 1.08998 * 109.88150 * 59.32465 * 14 13 11 41 41 H 1.09005 * 110.72251 * 96.24544 * 15 14 13 42 42 H 1.09001 * 110.72046 * 219.51677 * 15 14 13 43 43 H 0.96707 * 114.00254 * 292.25495 * 17 16 15 44 44 H 0.97006 * 119.99389 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36250 * 323.00694 * 26 13 11 46 46 H 1.08997 * 110.36555 * 85.21830 * 26 13 11 47 47 H 1.09002 * 109.78372 * 176.71773 * 27 9 8 48 48 H 1.08997 * 109.78411 * 297.53740 * 27 9 8 49 49 H 1.09007 * 110.15084 * 271.03024 * 29 28 27 50 50 H 1.09000 * 110.15830 * 32.77989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0699 -0.7752 -1.2331 5 6 3.2799 -1.5198 -0.6411 6 1 4.1372 -0.8543 -0.5407 7 6 3.6582 -2.7835 -1.4035 8 6 4.7741 -3.4857 -0.6411 9 6 4.3499 -3.7698 0.7993 10 1 5.2000 -4.1709 1.3511 11 6 3.2356 -4.7844 0.7978 12 8 2.0817 -4.4178 0.7252 13 7 3.5212 -6.0991 0.8772 14 6 4.8695 -6.6853 0.8660 15 6 4.7095 -8.2137 1.0073 16 6 3.3044 -8.3550 1.6560 17 8 3.3763 -8.1800 3.0724 18 6 2.6796 -9.6820 1.3096 19 1 1.8082 -9.7186 0.6727 20 6 3.2205 -10.8491 1.8058 21 7 4.2813 -10.8043 2.5818 22 14 2.4456 -12.4938 1.3770 23 1 3.0667 -13.0254 0.1373 24 1 2.6666 -13.4505 2.4910 25 1 0.9874 -12.3129 1.1618 26 6 2.5335 -7.1877 0.9907 27 6 3.8628 -2.4839 1.4844 28 7 2.7704 -1.9412 0.6904 29 6 2.0681 -0.7750 1.2272 30 1 -0.3633 -1.0270 0.0387 31 1 -0.3633 0.5469 0.8701 32 1 -0.3633 0.4799 -0.9087 33 1 2.3827 -0.0872 -2.0186 34 1 1.3254 -1.4780 -1.6072 35 1 2.7975 -3.4492 -1.4665 36 1 3.9992 -2.5228 -2.4055 37 1 5.6562 -2.8455 -0.6363 38 1 5.0158 -4.4260 -1.1367 39 1 5.3680 -6.4502 -0.0744 40 1 5.4506 -6.2945 1.7012 41 1 4.7329 -8.6959 0.0301 42 1 5.4809 -8.6235 1.6593 43 1 3.8500 -8.8865 3.5325 44 1 4.6621 -11.6255 2.9306 45 1 1.6982 -6.8780 1.6188 46 1 2.1766 -7.4805 0.0034 47 1 3.5097 -2.7126 2.4900 48 1 4.6772 -1.7612 1.5341 49 1 1.2413 -1.0939 1.8620 50 1 2.7577 -0.1492 1.7938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548724703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:23 Heat of formation + Delta-G solvation = -80.811342 kcal Electronic energy + Delta-G solvation = -29221.221990 eV Core-core repulsion = 25440.749159 eV Total energy + Delta-G solvation = -3780.472831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50326 -38.90529 -37.12045 -35.17658 -34.18114 -32.39618 -32.11894 -31.21696 -29.57291 -28.26781 -27.41607 -26.21977 -25.03115 -22.91240 -22.62750 -21.50749 -20.49568 -19.94292 -19.54187 -18.18060 -17.14958 -16.57798 -15.84978 -15.59195 -15.24241 -14.96079 -14.70490 -14.26992 -14.24736 -14.01003 -13.63446 -13.36214 -13.19336 -13.03974 -12.76251 -12.60440 -12.40262 -12.15468 -11.91646 -11.85186 -11.58919 -11.47009 -11.30536 -11.24584 -11.11228 -10.99502 -10.84428 -10.75379 -10.66461 -10.58366 -10.47399 -10.31621 -10.24148 -10.00352 -9.37871 -8.96585 -8.65689 -8.17677 -7.96578 -7.78217 -6.28616 -4.35914 3.19973 3.27690 3.31538 3.33862 3.71067 4.01474 4.27507 4.43990 4.62096 4.75550 4.85263 4.94036 4.98442 5.03443 5.16104 5.27055 5.33116 5.37626 5.48661 5.52911 5.56664 5.62557 5.67346 5.69885 5.75373 5.80878 5.86480 5.87194 5.93493 5.98340 5.99705 6.02536 6.06803 6.10613 6.23093 6.30092 6.36721 6.44477 6.51724 6.75297 6.94391 7.09843 7.13018 7.32870 7.36271 7.40698 7.75268 8.02966 8.34869 8.66221 8.96187 9.33102 9.50532 10.79006 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.003004 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.649465 B = 9319.581531 C = 9617.713640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.109 4.109 5 C 0.068 3.932 6 H 0.045 0.955 7 C -0.108 4.108 8 C -0.105 4.105 9 C -0.100 4.100 10 H 0.088 0.912 11 C 0.527 3.473 12 O -0.517 6.517 13 N -0.614 5.614 14 C 0.103 3.897 15 C -0.139 4.139 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.124 3.876 27 C 0.083 3.917 28 N -0.508 5.508 29 C 0.057 3.943 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.384 0.616 44 H 0.269 0.731 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.034 0.966 49 H 0.078 0.922 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 17.997 -5.764 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.040 4.040 6 H 0.063 0.937 7 C -0.146 4.146 8 C -0.143 4.143 9 C -0.122 4.122 10 H 0.106 0.894 11 C 0.314 3.686 12 O -0.391 6.391 13 N -0.349 5.349 14 C -0.021 4.021 15 C -0.178 4.178 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.002 3.998 27 C -0.046 4.046 28 N -0.232 5.232 29 C -0.071 4.071 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.236 0.764 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.052 0.948 49 H 0.096 0.904 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.464 18.304 -5.830 19.266 hybrid contribution 0.886 -0.950 0.178 1.311 sum 2.350 17.355 -5.652 18.403 Atomic orbital electron populations 1.21802 0.94421 1.02521 1.01059 1.22198 0.96471 0.98265 0.94795 0.91275 1.22422 0.97446 0.98424 0.96359 1.22511 0.95588 0.95042 0.90843 0.93686 1.21282 0.99411 0.96530 0.97331 1.21213 0.98280 1.01060 0.93772 1.21395 0.97731 0.95134 0.97975 0.89360 1.19878 0.90215 0.81228 0.77237 1.90702 1.20932 1.78849 1.48667 1.48679 1.08665 1.05395 1.72118 1.22078 0.84085 0.96768 0.99121 1.23225 1.02257 0.90388 1.01908 1.19631 0.89318 0.90807 0.79445 1.86100 1.80542 1.52493 1.20324 1.21511 1.14023 0.90497 1.31192 0.91696 1.24992 0.94336 0.99581 0.94155 1.69568 1.21788 1.28862 1.33622 0.86404 0.79866 0.82613 0.78031 1.20486 1.21036 1.19662 1.22265 0.91964 0.86064 0.99500 1.21691 0.91724 0.94097 0.97113 1.62685 1.26706 1.30942 1.02900 1.22566 0.97981 0.90196 0.96321 0.91738 0.92969 0.92928 0.91660 0.90259 0.90064 0.91817 0.91739 0.91284 0.93297 0.92806 0.91533 0.90076 0.76360 0.92134 0.91464 0.91590 0.90603 0.94770 0.90405 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.93 37.16 0.33 -1.03 16 2 C -0.10 -1.00 3.62 -88.44 -0.32 -1.32 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -1.16 6.17 -25.02 -0.15 -1.31 16 5 C 0.07 0.81 2.63 -66.58 -0.17 0.63 16 6 H 0.05 0.50 8.06 -51.93 -0.42 0.08 16 7 C -0.11 -1.34 5.34 -27.42 -0.15 -1.48 16 8 C -0.11 -1.28 5.33 -27.18 -0.14 -1.43 16 9 C -0.10 -1.44 2.54 -91.53 -0.23 -1.67 16 10 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 11 C 0.53 9.93 6.27 -10.99 -0.07 9.86 16 12 O -0.52 -11.21 14.64 5.55 0.08 -11.12 16 13 N -0.61 -12.25 3.33 -170.52 -0.57 -12.82 16 14 C 0.10 1.86 6.24 -3.06 -0.02 1.84 16 15 C -0.14 -2.98 5.66 -24.76 -0.14 -3.12 16 16 C 0.25 6.04 0.89 -89.49 -0.08 5.96 16 17 O -0.58 -15.12 13.18 -35.23 -0.46 -15.59 16 18 C -0.53 -13.95 8.25 -34.44 -0.28 -14.23 16 19 H 0.06 1.69 7.77 -52.48 -0.41 1.29 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 21 N -0.90 -23.12 10.79 55.43 0.60 -22.52 16 22 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.12 2.82 6.06 -2.53 -0.02 2.80 16 27 C 0.08 1.12 5.12 -4.23 -0.02 1.10 16 28 N -0.51 -7.08 3.03 -225.07 -0.68 -7.76 16 29 C 0.06 0.69 6.51 -3.18 -0.02 0.67 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.08 0.95 7.86 -51.93 -0.41 0.55 16 35 H 0.08 1.26 7.08 -51.93 -0.37 0.90 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 39 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 40 H 0.05 0.92 7.62 -51.93 -0.40 0.53 16 41 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.08 1.81 7.86 -51.93 -0.41 1.41 16 43 H 0.38 10.02 6.93 45.56 0.32 10.34 16 44 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 45 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 46 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.03 0.40 8.04 -51.93 -0.42 -0.02 16 49 H 0.08 1.01 7.71 -51.93 -0.40 0.61 16 50 H 0.03 0.33 8.04 -51.93 -0.42 -0.09 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -28.49 377.86 -10.22 -38.71 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.27 Total: 11.22 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.59 Total: -0.98 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.65 Total: -43.10 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.38 Total: -26.71 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.49 -10.22 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.103 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds