Wall clock time and date at job start Tue Mar 31 2020 13:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.29657 * 2 1 4 4 C 1.55331 * 110.33801 * 237.84416 * 2 1 3 5 5 C 1.53917 * 102.08548 * 218.91796 * 4 2 1 6 6 H 1.08996 * 110.99975 * 281.33883 * 5 4 2 7 7 C 1.52362 * 113.83135 * 155.33637 * 5 4 2 8 8 C 1.52296 * 108.29009 * 185.32320 * 7 5 4 9 9 C 1.52825 * 110.74361 * 55.92068 * 8 7 5 10 10 H 1.08999 * 109.20885 * 186.16526 * 9 8 7 11 11 C 1.50702 * 109.23867 * 66.74936 * 9 8 7 12 12 O 1.21286 * 119.99968 * 270.93174 * 11 9 8 13 13 N 1.34770 * 120.00011 * 90.93194 * 11 9 8 14 14 C 1.47027 * 125.65059 * 355.01577 * 13 11 9 15 15 C 1.54317 * 107.40376 * 178.82510 * 14 13 11 16 16 C 1.55406 * 102.82838 * 337.97590 * 15 14 13 17 17 O 1.42898 * 110.92297 * 277.25167 * 16 15 14 18 18 C 1.50705 * 111.03640 * 153.47706 * 16 15 14 19 19 H 1.08005 * 119.99394 * 247.68023 * 18 16 15 20 20 C 1.37874 * 120.00458 * 67.67887 * 18 16 15 21 21 N 1.31514 * 119.99520 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00037 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47295 * 90.00186 * 22 20 18 24 24 H 1.48499 * 109.47118 * 210.00155 * 22 20 18 25 25 H 1.48504 * 109.47265 * 330.00110 * 22 20 18 26 26 C 1.47428 * 125.65091 * 174.96853 * 13 11 9 27 27 C 1.53627 * 110.65179 * 306.44804 * 9 8 7 28 28 N 1.45540 * 107.86681 * 57.12963 * 27 9 8 29 29 C 1.46334 * 117.21080 * 174.47665 * 28 27 9 30 30 H 1.09006 * 109.46718 * 182.15577 * 1 2 3 31 31 H 1.08999 * 109.46934 * 302.15184 * 1 2 3 32 32 H 1.08997 * 109.47224 * 62.16182 * 1 2 3 33 33 H 1.09007 * 110.90747 * 100.72216 * 4 2 1 34 34 H 1.09002 * 110.90821 * 337.11908 * 4 2 1 35 35 H 1.08996 * 109.83535 * 304.28391 * 7 5 4 36 36 H 1.09001 * 109.83149 * 65.23768 * 7 5 4 37 37 H 1.08994 * 108.92775 * 295.74970 * 8 7 5 38 38 H 1.08999 * 109.42493 * 176.40992 * 8 7 5 39 39 H 1.09000 * 109.87801 * 298.31717 * 14 13 11 40 40 H 1.08998 * 109.88150 * 59.32465 * 14 13 11 41 41 H 1.09005 * 110.72251 * 96.24544 * 15 14 13 42 42 H 1.09001 * 110.72046 * 219.51677 * 15 14 13 43 43 H 0.96707 * 114.00254 * 292.25495 * 17 16 15 44 44 H 0.97006 * 119.99389 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36250 * 323.00694 * 26 13 11 46 46 H 1.08997 * 110.36555 * 85.21830 * 26 13 11 47 47 H 1.09002 * 109.78372 * 176.71773 * 27 9 8 48 48 H 1.08997 * 109.78411 * 297.53740 * 27 9 8 49 49 H 1.09007 * 110.15084 * 271.03024 * 29 28 27 50 50 H 1.09000 * 110.15830 * 32.77989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0699 -0.7752 -1.2331 5 6 3.2799 -1.5198 -0.6411 6 1 4.1372 -0.8543 -0.5407 7 6 3.6582 -2.7835 -1.4035 8 6 4.7741 -3.4857 -0.6411 9 6 4.3499 -3.7698 0.7993 10 1 5.2000 -4.1709 1.3511 11 6 3.2356 -4.7844 0.7978 12 8 2.0817 -4.4178 0.7252 13 7 3.5212 -6.0991 0.8772 14 6 4.8695 -6.6853 0.8660 15 6 4.7095 -8.2137 1.0073 16 6 3.3044 -8.3550 1.6560 17 8 3.3763 -8.1800 3.0724 18 6 2.6796 -9.6820 1.3096 19 1 1.8082 -9.7186 0.6727 20 6 3.2205 -10.8491 1.8058 21 7 4.2813 -10.8043 2.5818 22 14 2.4456 -12.4938 1.3770 23 1 3.0667 -13.0254 0.1373 24 1 2.6666 -13.4505 2.4910 25 1 0.9874 -12.3129 1.1618 26 6 2.5335 -7.1877 0.9907 27 6 3.8628 -2.4839 1.4844 28 7 2.7704 -1.9412 0.6904 29 6 2.0681 -0.7750 1.2272 30 1 -0.3633 -1.0270 0.0387 31 1 -0.3633 0.5469 0.8701 32 1 -0.3633 0.4799 -0.9087 33 1 2.3827 -0.0872 -2.0186 34 1 1.3254 -1.4780 -1.6072 35 1 2.7975 -3.4492 -1.4665 36 1 3.9992 -2.5228 -2.4055 37 1 5.6562 -2.8455 -0.6363 38 1 5.0158 -4.4260 -1.1367 39 1 5.3680 -6.4502 -0.0744 40 1 5.4506 -6.2945 1.7012 41 1 4.7329 -8.6959 0.0301 42 1 5.4809 -8.6235 1.6593 43 1 3.8500 -8.8865 3.5325 44 1 4.6621 -11.6255 2.9306 45 1 1.6982 -6.8780 1.6188 46 1 2.1766 -7.4805 0.0034 47 1 3.5097 -2.7126 2.4900 48 1 4.6772 -1.7612 1.5341 49 1 1.2413 -1.0939 1.8620 50 1 2.7577 -0.1492 1.7938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548724703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:22 Heat of formation + Delta-G solvation = -98.664355 kcal Electronic energy + Delta-G solvation = -29221.996155 eV Core-core repulsion = 25440.749159 eV Total energy + Delta-G solvation = -3781.246996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66493 -40.30034 -38.73575 -36.25895 -35.99451 -34.13588 -33.34380 -32.31346 -31.19414 -29.98058 -28.39334 -27.42813 -26.59985 -24.32313 -23.70563 -22.75795 -21.62218 -21.28870 -20.83973 -19.65189 -19.05611 -17.90691 -17.00547 -16.89103 -16.74663 -16.61914 -16.02636 -15.80341 -15.52487 -15.18163 -14.92674 -14.80405 -14.16817 -14.14637 -14.07046 -13.97350 -13.67013 -13.46697 -13.31915 -13.20753 -13.11113 -12.99644 -12.83705 -12.61435 -12.57932 -12.46696 -12.27385 -12.00615 -11.92977 -11.84278 -11.59900 -11.52177 -11.31554 -11.25765 -11.14428 -10.67787 -10.41454 -10.12838 -9.40420 -8.92504 -8.25314 -6.39769 1.41426 1.44537 1.53735 1.87696 2.19411 2.40875 2.99394 3.06591 3.55503 3.62705 3.68154 3.85083 3.95390 3.98926 4.03280 4.08408 4.18262 4.30597 4.36121 4.38336 4.44760 4.50104 4.57269 4.63182 4.66966 4.72537 4.72969 4.74045 4.77414 4.88427 4.91911 4.92779 4.99967 5.06527 5.14002 5.18886 5.20419 5.22704 5.30981 5.40852 5.45344 5.46605 5.48542 5.52852 5.77658 6.07322 6.23726 6.45485 6.63018 6.82922 7.31530 7.45004 7.46656 8.80955 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.003004 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.649465 B = 9319.581531 C = 9617.713640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.093 0.907 4 C -0.107 4.107 5 C 0.070 3.930 6 H 0.067 0.933 7 C -0.106 4.106 8 C -0.102 4.102 9 C -0.093 4.093 10 H 0.104 0.896 11 C 0.521 3.479 12 O -0.553 6.553 13 N -0.620 5.620 14 C 0.110 3.890 15 C -0.129 4.129 16 C 0.235 3.765 17 O -0.596 6.596 18 C -0.562 4.562 19 H 0.054 0.946 20 C 0.036 3.964 21 N -0.909 5.909 22 Si 0.961 3.039 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.277 1.277 26 C 0.130 3.870 27 C 0.083 3.917 28 N -0.540 5.540 29 C 0.055 3.945 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.381 0.619 44 H 0.273 0.727 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.054 0.946 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.833 19.730 -6.926 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.112 0.888 4 C -0.145 4.145 5 C -0.038 4.038 6 H 0.085 0.915 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.114 4.114 10 H 0.122 0.878 11 C 0.311 3.689 12 O -0.430 6.430 13 N -0.354 5.354 14 C -0.012 4.012 15 C -0.168 4.168 16 C 0.195 3.805 17 O -0.406 6.406 18 C -0.601 4.601 19 H 0.072 0.928 20 C -0.165 4.165 21 N -0.549 5.549 22 Si 0.787 3.213 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.202 1.202 26 C 0.007 3.993 27 C -0.046 4.046 28 N -0.265 5.265 29 C -0.072 4.072 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.232 0.768 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.647 20.050 -6.996 21.547 hybrid contribution 0.139 -1.500 0.569 1.610 sum 3.786 18.550 -6.427 19.994 Atomic orbital electron populations 1.21763 0.94557 1.00981 1.02192 1.22218 0.96367 0.99056 0.93579 0.88846 1.22421 0.96579 0.98374 0.97124 1.22585 0.96558 0.95067 0.89575 0.91511 1.21264 0.98039 0.96156 0.98957 1.21255 0.99223 1.01742 0.91742 1.21471 0.96013 0.93829 1.00132 0.87771 1.20853 0.91141 0.81215 0.75712 1.90685 1.22985 1.79293 1.50045 1.48803 1.08618 1.05431 1.72556 1.22100 0.83341 0.94118 1.01635 1.23013 0.99847 0.93007 1.00952 1.19806 0.91293 0.90633 0.78772 1.86087 1.80687 1.52319 1.21480 1.21724 1.14358 0.92006 1.31985 0.92821 1.25618 0.94737 1.02211 0.93971 1.69625 1.22076 1.29692 1.33502 0.85507 0.78659 0.79035 0.78101 1.19613 1.20468 1.20233 1.21979 0.91856 0.86938 0.98499 1.21677 0.92608 0.94365 0.95923 1.62613 1.27524 1.32286 1.04085 1.22567 0.97514 0.90098 0.97067 0.94574 0.92134 0.91495 0.89085 0.92656 0.94198 0.89383 0.88235 0.91422 0.89773 0.91251 0.91892 0.91084 0.76810 0.91786 0.94403 0.91918 0.92690 0.91756 0.92749 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.93 71.98 0.64 -1.94 16 2 C -0.09 -1.73 3.62 -9.38 -0.03 -1.76 16 3 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -2.08 6.17 31.70 0.20 -1.89 16 5 C 0.07 1.48 2.63 44.67 0.12 1.60 16 6 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 7 C -0.11 -2.42 5.34 30.15 0.16 -2.26 16 8 C -0.10 -2.15 5.33 30.30 0.16 -1.99 16 9 C -0.09 -2.47 2.54 -11.39 -0.03 -2.50 16 10 H 0.10 2.44 7.00 -2.39 -0.02 2.43 16 11 C 0.52 19.69 6.27 87.66 0.55 20.24 16 12 O -0.55 -24.96 14.64 -3.05 -0.04 -25.01 16 13 N -0.62 -24.78 3.33 -811.81 -2.70 -27.48 16 14 C 0.11 3.82 6.24 86.73 0.54 4.36 16 15 C -0.13 -5.52 5.66 31.87 0.18 -5.34 16 16 C 0.24 11.70 0.89 -10.06 -0.01 11.69 16 17 O -0.60 -31.66 13.18 -148.98 -1.96 -33.63 16 18 C -0.56 -30.13 8.25 25.60 0.21 -29.92 16 19 H 0.05 2.91 7.77 -2.91 -0.02 2.88 16 20 C 0.04 1.83 5.30 84.65 0.45 2.28 16 21 N -0.91 -46.86 10.79 21.45 0.23 -46.63 16 22 Si 0.96 41.53 29.54 68.60 2.03 43.55 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.13 6.18 6.06 86.85 0.53 6.71 16 27 C 0.08 2.12 5.12 86.77 0.44 2.56 16 28 N -0.54 -14.56 3.03 -865.98 -2.62 -17.18 16 29 C 0.06 1.29 6.51 87.02 0.57 1.85 16 30 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.05 1.33 7.86 -2.39 -0.02 1.32 16 35 H 0.04 1.24 7.08 -2.39 -0.02 1.22 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.46 7.81 -2.39 -0.02 1.44 16 39 H 0.08 2.36 7.81 -2.39 -0.02 2.34 16 40 H 0.07 2.21 7.62 -2.39 -0.02 2.19 16 41 H 0.06 2.69 8.03 -2.38 -0.02 2.67 16 42 H 0.07 3.16 7.86 -2.39 -0.02 3.14 16 43 H 0.38 20.33 6.93 -74.05 -0.51 19.82 16 44 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 45 H 0.04 1.96 8.09 -2.39 -0.02 1.94 16 46 H 0.06 2.94 8.02 -2.39 -0.02 2.92 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 1.26 8.04 -2.39 -0.02 1.24 16 49 H 0.05 1.48 7.71 -2.38 -0.02 1.46 16 50 H 0.04 0.88 8.04 -2.39 -0.02 0.86 16 Total: -1.00 -64.17 377.86 0.00 -64.17 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: 0.40 Total: 38.52 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.67 Total: 3.70 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -5.09 Total: -91.30 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -2.01 Total: -58.63 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -64.17 0.00 -64.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.493 kcal (2) G-P(sol) polarization free energy of solvation -64.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds