Wall clock time and date at job start Tue Mar 31 2020 13:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47201 * 2 1 4 4 C 1.37092 * 119.99918 * 264.82471 * 3 2 1 5 5 H 1.08001 * 119.99901 * 135.46180 * 4 3 2 6 6 C 1.38946 * 120.00333 * 315.46458 * 4 3 2 7 7 N 1.31414 * 120.00318 * 3.20674 * 6 4 3 8 8 Si 1.86802 * 120.00102 * 183.20031 * 6 4 3 9 9 H 1.48493 * 109.47195 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47169 * 120.00332 * 8 6 4 11 11 H 1.48497 * 109.47204 * 239.99982 * 8 6 4 12 12 C 1.34774 * 119.99915 * 84.82960 * 3 2 1 13 13 O 1.21289 * 119.99924 * 184.83283 * 12 3 2 14 14 C 1.50698 * 120.00091 * 4.83942 * 12 3 2 15 15 H 1.08997 * 110.85976 * 321.87874 * 14 12 3 16 16 C 1.54628 * 110.97332 * 85.67371 * 14 12 3 17 17 C 1.51282 * 104.19254 * 93.35921 * 16 14 12 18 18 O 1.21290 * 124.93676 * 196.23324 * 17 16 14 19 19 N 1.34410 * 110.11915 * 16.25361 * 17 16 14 20 20 C 1.46504 * 124.34791 * 180.40824 * 19 17 16 21 21 C 1.52995 * 109.47195 * 300.02106 * 20 19 17 22 22 C 1.53004 * 109.46918 * 180.02562 * 21 20 19 23 23 C 1.53004 * 109.47125 * 300.00043 * 22 21 20 24 24 C 1.53000 * 109.47189 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.46906 * 60.00029 * 23 22 21 26 26 C 1.52993 * 109.47707 * 299.99996 * 25 23 22 27 27 C 1.46760 * 111.30405 * 0.67414 * 19 17 16 28 28 H 1.09001 * 109.46815 * 299.99843 * 1 2 3 29 29 H 1.08995 * 109.46946 * 59.99802 * 1 2 3 30 30 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47076 * 239.99727 * 2 1 3 32 32 H 1.09005 * 109.46948 * 120.00151 * 2 1 3 33 33 H 0.96997 * 120.00617 * 179.97438 * 7 6 4 34 34 H 1.08992 * 110.48636 * 334.68280 * 16 14 12 35 35 H 1.09004 * 110.59701 * 212.09199 * 16 14 12 36 36 H 1.09008 * 109.46773 * 180.02562 * 20 19 17 37 37 H 1.08999 * 109.47273 * 60.00517 * 21 20 19 38 38 H 1.09001 * 109.47571 * 300.00433 * 21 20 19 39 39 H 1.09006 * 109.46850 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47561 * 60.00225 * 22 21 20 41 41 H 1.09007 * 109.46830 * 300.00306 * 23 22 21 42 42 H 1.08997 * 109.47223 * 59.99327 * 24 23 22 43 43 H 1.09008 * 109.46609 * 299.99936 * 24 23 22 44 44 H 1.08992 * 109.47008 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47364 * 60.00377 * 25 23 22 46 46 H 1.09001 * 109.47219 * 179.97438 * 25 23 22 47 47 H 1.09007 * 109.47205 * 300.00443 * 26 25 23 48 48 H 1.08997 * 109.47719 * 180.02562 * 26 25 23 49 49 H 1.08998 * 110.24940 * 101.71415 * 27 19 17 50 50 H 1.08999 * 110.24976 * 223.72554 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3478 1.9917 -1.1824 5 1 2.0257 3.0044 -1.3754 6 6 3.0961 1.3078 -2.1327 7 7 3.4343 0.0549 -1.9254 8 14 3.6211 2.1690 -3.7049 9 1 3.1173 3.5659 -3.6961 10 1 5.1034 2.1784 -3.7929 11 1 3.0604 1.4475 -4.8755 12 6 2.1438 2.0516 1.1624 13 8 2.4638 3.2215 1.1563 14 6 1.8867 1.3475 2.4698 15 1 1.0495 0.6554 2.3798 16 6 3.1571 0.6181 2.9649 17 6 3.8262 1.6190 3.8809 18 8 4.9783 1.5563 4.2550 19 7 2.9582 2.5874 4.2204 20 6 3.2828 3.7206 5.0905 21 6 3.7177 3.2019 6.4625 22 6 4.0561 4.3854 7.3713 23 6 5.1937 5.1974 6.7489 24 6 5.5325 6.3805 7.6580 25 6 4.7587 5.7160 5.3768 26 6 4.4203 4.5327 4.4680 27 6 1.6418 2.3606 3.6126 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9564 -0.4227 -2.5889 34 1 3.8084 0.3742 2.1257 35 1 2.8912 -0.2845 3.5151 36 1 2.4036 4.3550 5.2039 37 1 4.5968 2.5675 6.3492 38 1 2.9072 2.6237 6.9061 39 1 4.3664 4.0158 8.3487 40 1 3.1769 5.0195 7.4847 41 1 6.0730 4.5632 6.6356 42 1 5.8424 6.0107 8.6353 43 1 4.6532 7.0148 7.7716 44 1 6.3426 6.9592 7.2144 45 1 3.8795 6.3502 5.4901 46 1 5.5690 6.2949 4.9336 47 1 5.2996 3.8985 4.3547 48 1 4.1109 4.9022 3.4904 49 1 0.9534 1.9445 4.3481 50 1 1.2464 3.2931 3.2100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066767607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:53 Heat of formation + Delta-G solvation = -86.989781 kcal Electronic energy + Delta-G solvation = -29173.158180 eV Core-core repulsion = 25392.417432 eV Total energy + Delta-G solvation = -3780.740748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61304 -38.75734 -37.84041 -35.81424 -34.86609 -33.36255 -31.97539 -30.73635 -30.06976 -29.46649 -27.30727 -26.11911 -25.04680 -22.79989 -22.63198 -21.82463 -21.72928 -19.97623 -18.71844 -18.68659 -17.09821 -16.58559 -16.35492 -15.35234 -15.10372 -14.74952 -14.38256 -14.29350 -14.26522 -13.95711 -13.94183 -13.56298 -13.33316 -13.07346 -12.91470 -12.67318 -12.39914 -12.35473 -12.15622 -12.09671 -11.80937 -11.54677 -11.42275 -11.37195 -11.16823 -11.10062 -10.99607 -10.88412 -10.80654 -10.64271 -10.46921 -10.25602 -10.23333 -10.06763 -10.05410 -9.20953 -8.91136 -8.49056 -8.30114 -7.44123 -6.26687 -4.10159 2.98794 3.16384 3.26548 3.30321 3.32118 3.76778 4.11681 4.58811 4.64487 4.69204 4.76654 4.87130 4.90483 5.05568 5.16420 5.19524 5.27761 5.39971 5.47461 5.47600 5.52893 5.57199 5.58087 5.68423 5.73254 5.78574 5.81896 5.82175 5.89946 5.98650 6.01061 6.12506 6.14087 6.18021 6.22335 6.26988 6.31862 6.32973 6.34218 6.47145 6.53208 6.56399 6.92116 6.97566 7.35828 7.49946 7.63338 8.30901 8.51807 8.58803 9.15491 9.36405 9.96120 10.71285 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003507 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.333289 B = 7981.649383 C = 8728.140312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 N -0.440 5.440 4 C -0.302 4.302 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.881 5.881 8 Si 0.923 3.077 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.472 3.528 13 O -0.571 6.571 14 C -0.122 4.122 15 H 0.106 0.894 16 C -0.141 4.141 17 C 0.527 3.473 18 O -0.539 6.539 19 N -0.607 5.607 20 C 0.167 3.833 21 C -0.134 4.134 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.146 4.146 25 C -0.107 4.107 26 C -0.136 4.136 27 C 0.122 3.878 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.268 0.732 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 3.012 14.955 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.040 4.040 3 N -0.159 5.159 4 C -0.430 4.430 5 H 0.104 0.896 6 C -0.164 4.164 7 N -0.521 5.521 8 Si 0.749 3.251 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.259 3.741 13 O -0.454 6.454 14 C -0.144 4.144 15 H 0.124 0.876 16 C -0.182 4.182 17 C 0.316 3.684 18 O -0.416 6.416 19 N -0.339 5.339 20 C 0.065 3.935 21 C -0.172 4.172 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.203 4.203 25 C -0.145 4.145 26 C -0.174 4.174 27 C -0.001 4.001 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.823 3.477 15.042 15.695 hybrid contribution 0.084 0.121 -0.903 0.915 sum -2.739 3.598 14.139 14.845 Atomic orbital electron populations 1.22227 0.98609 1.00201 1.01151 1.21920 0.91337 0.85731 1.04963 1.43383 1.56172 1.11907 1.04477 1.19417 1.31185 0.99734 0.92632 0.89574 1.25507 0.95089 0.95721 1.00094 1.69545 1.37379 1.09052 1.36075 0.85924 0.78646 0.79706 0.80787 1.19259 1.20602 1.20781 1.19997 0.81703 0.87828 0.84554 1.90534 1.51298 1.16626 1.86916 1.22363 0.99092 0.98003 0.94920 0.87567 1.22259 0.97477 0.97998 1.00420 1.20742 0.85310 0.82393 0.79984 1.90641 1.16567 1.76656 1.57763 1.48225 1.12378 1.24599 1.48732 1.20857 0.97964 0.86161 0.88550 1.21944 1.02432 0.98350 0.94486 1.21519 0.98263 0.96507 0.98165 1.21187 0.98583 0.96664 0.94995 1.21823 1.01264 0.98001 0.99220 1.21530 1.01040 0.97349 0.94616 1.21921 0.99437 0.96888 0.99138 1.21975 0.84444 1.00345 0.93379 0.94339 0.92557 0.93178 0.85232 0.93730 0.92146 0.87407 0.87827 0.89975 0.90257 0.92121 0.91961 0.92077 0.91034 0.92926 0.92829 0.92798 0.92116 0.91843 0.90465 0.90952 0.91376 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.03 37.16 0.37 -2.42 16 2 C 0.08 1.74 5.28 -4.04 -0.02 1.72 16 3 N -0.44 -10.64 2.54 -114.82 -0.29 -10.93 16 4 C -0.30 -8.14 8.87 -14.94 -0.13 -8.27 16 5 H 0.09 2.43 7.78 -52.49 -0.41 2.03 16 6 C 0.04 1.01 5.37 -17.47 -0.09 0.91 16 7 N -0.88 -23.02 10.74 55.50 0.60 -22.43 16 8 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.47 10.84 6.71 -10.99 -0.07 10.76 16 13 O -0.57 -15.10 15.82 5.55 0.09 -15.01 16 14 C -0.12 -2.07 2.50 -90.04 -0.23 -2.30 16 15 H 0.11 1.54 5.87 -51.93 -0.30 1.23 16 16 C -0.14 -2.41 5.87 -26.74 -0.16 -2.56 16 17 C 0.53 9.85 7.41 -10.86 -0.08 9.77 16 18 O -0.54 -11.44 15.12 5.55 0.08 -11.36 16 19 N -0.61 -9.89 2.83 -164.72 -0.47 -10.36 16 20 C 0.17 2.38 2.74 -67.93 -0.19 2.20 16 21 C -0.13 -1.69 5.21 -26.73 -0.14 -1.83 16 22 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 23 C -0.10 -1.03 2.72 -90.62 -0.25 -1.28 16 24 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 25 C -0.11 -1.29 5.20 -26.74 -0.14 -1.42 16 26 C -0.14 -2.09 5.21 -26.73 -0.14 -2.23 16 27 C 0.12 1.83 6.53 -3.02 -0.02 1.81 16 28 H 0.04 0.60 7.07 -51.93 -0.37 0.23 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.13 3.04 5.20 -51.93 -0.27 2.77 16 32 H 0.04 0.83 6.33 -51.93 -0.33 0.50 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.11 2.14 7.90 -51.93 -0.41 1.73 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.04 8.07 -51.92 -0.42 0.62 16 37 H 0.08 1.20 6.77 -51.93 -0.35 0.85 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.39 6.80 -51.93 -0.35 1.04 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 1.40 7.39 -51.93 -0.38 1.02 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -31.20 383.44 -8.97 -40.16 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.65 Total: 5.71 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.08 Total: 2.69 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.16 Total: -43.72 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: 0.17 Total: -26.37 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.20 -8.97 -40.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066767607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.825 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds