Wall clock time and date at job start Tue Mar 31 2020 13:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47201 * 2 1 4 4 C 1.37092 * 119.99918 * 264.82471 * 3 2 1 5 5 H 1.08001 * 119.99901 * 135.46180 * 4 3 2 6 6 C 1.38946 * 120.00333 * 315.46458 * 4 3 2 7 7 N 1.31414 * 120.00318 * 3.20674 * 6 4 3 8 8 Si 1.86802 * 120.00102 * 183.20031 * 6 4 3 9 9 H 1.48493 * 109.47195 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47169 * 120.00332 * 8 6 4 11 11 H 1.48497 * 109.47204 * 239.99982 * 8 6 4 12 12 C 1.34774 * 119.99915 * 84.82960 * 3 2 1 13 13 O 1.21289 * 119.99924 * 184.83283 * 12 3 2 14 14 C 1.50698 * 120.00091 * 4.83942 * 12 3 2 15 15 H 1.08997 * 110.85976 * 321.87874 * 14 12 3 16 16 C 1.54628 * 110.97332 * 85.67371 * 14 12 3 17 17 C 1.51282 * 104.19254 * 93.35921 * 16 14 12 18 18 O 1.21290 * 124.93676 * 196.23324 * 17 16 14 19 19 N 1.34410 * 110.11915 * 16.25361 * 17 16 14 20 20 C 1.46504 * 124.34791 * 180.40824 * 19 17 16 21 21 C 1.52995 * 109.47195 * 300.02106 * 20 19 17 22 22 C 1.53004 * 109.46918 * 180.02562 * 21 20 19 23 23 C 1.53004 * 109.47125 * 300.00043 * 22 21 20 24 24 C 1.53000 * 109.47189 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.46906 * 60.00029 * 23 22 21 26 26 C 1.52993 * 109.47707 * 299.99996 * 25 23 22 27 27 C 1.46760 * 111.30405 * 0.67414 * 19 17 16 28 28 H 1.09001 * 109.46815 * 299.99843 * 1 2 3 29 29 H 1.08995 * 109.46946 * 59.99802 * 1 2 3 30 30 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47076 * 239.99727 * 2 1 3 32 32 H 1.09005 * 109.46948 * 120.00151 * 2 1 3 33 33 H 0.96997 * 120.00617 * 179.97438 * 7 6 4 34 34 H 1.08992 * 110.48636 * 334.68280 * 16 14 12 35 35 H 1.09004 * 110.59701 * 212.09199 * 16 14 12 36 36 H 1.09008 * 109.46773 * 180.02562 * 20 19 17 37 37 H 1.08999 * 109.47273 * 60.00517 * 21 20 19 38 38 H 1.09001 * 109.47571 * 300.00433 * 21 20 19 39 39 H 1.09006 * 109.46850 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47561 * 60.00225 * 22 21 20 41 41 H 1.09007 * 109.46830 * 300.00306 * 23 22 21 42 42 H 1.08997 * 109.47223 * 59.99327 * 24 23 22 43 43 H 1.09008 * 109.46609 * 299.99936 * 24 23 22 44 44 H 1.08992 * 109.47008 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47364 * 60.00377 * 25 23 22 46 46 H 1.09001 * 109.47219 * 179.97438 * 25 23 22 47 47 H 1.09007 * 109.47205 * 300.00443 * 26 25 23 48 48 H 1.08997 * 109.47719 * 180.02562 * 26 25 23 49 49 H 1.08998 * 110.24940 * 101.71415 * 27 19 17 50 50 H 1.08999 * 110.24976 * 223.72554 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3478 1.9917 -1.1824 5 1 2.0257 3.0044 -1.3754 6 6 3.0961 1.3078 -2.1327 7 7 3.4343 0.0549 -1.9254 8 14 3.6211 2.1690 -3.7049 9 1 3.1173 3.5659 -3.6961 10 1 5.1034 2.1784 -3.7929 11 1 3.0604 1.4475 -4.8755 12 6 2.1438 2.0516 1.1624 13 8 2.4638 3.2215 1.1563 14 6 1.8867 1.3475 2.4698 15 1 1.0495 0.6554 2.3798 16 6 3.1571 0.6181 2.9649 17 6 3.8262 1.6190 3.8809 18 8 4.9783 1.5563 4.2550 19 7 2.9582 2.5874 4.2204 20 6 3.2828 3.7206 5.0905 21 6 3.7177 3.2019 6.4625 22 6 4.0561 4.3854 7.3713 23 6 5.1937 5.1974 6.7489 24 6 5.5325 6.3805 7.6580 25 6 4.7587 5.7160 5.3768 26 6 4.4203 4.5327 4.4680 27 6 1.6418 2.3606 3.6126 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9564 -0.4227 -2.5889 34 1 3.8084 0.3742 2.1257 35 1 2.8912 -0.2845 3.5151 36 1 2.4036 4.3550 5.2039 37 1 4.5968 2.5675 6.3492 38 1 2.9072 2.6237 6.9061 39 1 4.3664 4.0158 8.3487 40 1 3.1769 5.0195 7.4847 41 1 6.0730 4.5632 6.6356 42 1 5.8424 6.0107 8.6353 43 1 4.6532 7.0148 7.7716 44 1 6.3426 6.9592 7.2144 45 1 3.8795 6.3502 5.4901 46 1 5.5690 6.2949 4.9336 47 1 5.2996 3.8985 4.3547 48 1 4.1109 4.9022 3.4904 49 1 0.9534 1.9445 4.3481 50 1 1.2464 3.2931 3.2100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066767607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:52 Heat of formation + Delta-G solvation = -104.736120 kcal Electronic energy + Delta-G solvation = -29173.927719 eV Core-core repulsion = 25392.417432 eV Total energy + Delta-G solvation = -3781.510287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99490 -40.27256 -39.11213 -37.34621 -36.65894 -34.60228 -33.79060 -31.76205 -31.27759 -31.10489 -28.68369 -27.41467 -26.57836 -24.33914 -23.66705 -23.33386 -22.89904 -21.01330 -20.31699 -20.02139 -18.85623 -18.13176 -17.81204 -17.04793 -16.45307 -16.37133 -15.93126 -15.58110 -15.33349 -15.29771 -15.20202 -14.85929 -14.64848 -14.51266 -14.44167 -13.98723 -13.77087 -13.55164 -13.36044 -13.19911 -13.16179 -12.96139 -12.93539 -12.86637 -12.52036 -12.46100 -12.44444 -12.23597 -12.09260 -12.03278 -12.00625 -11.70429 -11.55221 -11.21212 -11.08279 -10.85725 -10.62433 -10.32650 -9.59877 -9.35038 -8.24093 -6.15537 1.33813 1.38598 1.50224 1.55582 2.00209 2.09675 2.26799 2.96129 3.08080 3.32888 3.55625 3.73167 3.73792 3.85408 3.93987 4.04129 4.13156 4.18959 4.33659 4.38400 4.46876 4.50726 4.54129 4.56000 4.58156 4.64240 4.73402 4.79186 4.83179 4.87715 4.91440 4.93005 4.94466 4.98749 5.09162 5.13227 5.15287 5.21269 5.25487 5.38073 5.39538 5.41941 5.47810 5.55248 5.74207 5.77709 6.17792 6.30852 6.61509 7.18554 7.19597 7.50970 8.08589 8.70024 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003507 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.333289 B = 7981.649383 C = 8728.140312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 N -0.454 5.454 4 C -0.331 4.331 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.893 5.893 8 Si 0.977 3.023 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.460 3.540 13 O -0.619 6.619 14 C -0.111 4.111 15 H 0.144 0.856 16 C -0.135 4.135 17 C 0.513 3.487 18 O -0.577 6.577 19 N -0.605 5.605 20 C 0.160 3.840 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.095 4.095 24 C -0.140 4.140 25 C -0.101 4.101 26 C -0.131 4.131 27 C 0.124 3.876 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.271 0.729 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.037 0.963 49 H 0.124 0.876 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 2.549 17.278 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.041 4.041 3 N -0.173 5.173 4 C -0.460 4.460 5 H 0.077 0.923 6 C -0.198 4.198 7 N -0.532 5.532 8 Si 0.802 3.198 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.188 1.188 12 C 0.249 3.751 13 O -0.505 6.505 14 C -0.132 4.132 15 H 0.162 0.838 16 C -0.175 4.175 17 C 0.302 3.698 18 O -0.458 6.458 19 N -0.336 5.336 20 C 0.058 3.942 21 C -0.163 4.163 22 C -0.139 4.139 23 C -0.113 4.113 24 C -0.197 4.197 25 C -0.139 4.139 26 C -0.170 4.170 27 C 0.001 3.999 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.141 0.859 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.988 2.990 17.364 18.312 hybrid contribution 0.776 0.278 -1.676 1.868 sum -4.211 3.269 15.688 16.569 Atomic orbital electron populations 1.22115 0.95547 1.02328 1.01122 1.21975 0.93821 0.83662 1.04636 1.43654 1.56382 1.13113 1.04162 1.19340 1.32749 0.99214 0.94695 0.92325 1.26128 0.94831 0.96333 1.02492 1.69666 1.37210 1.09471 1.36839 0.85117 0.77896 0.78552 0.78269 1.19963 1.20811 1.18810 1.20980 0.80363 0.87473 0.86280 1.90500 1.53147 1.18935 1.87934 1.22333 1.00226 0.98685 0.91984 0.83786 1.22266 0.96538 0.99400 0.99319 1.21110 0.85156 0.83348 0.80214 1.90618 1.18129 1.77727 1.59295 1.48408 1.12657 1.24261 1.48308 1.21115 0.98188 0.85836 0.89012 1.21855 1.01566 0.99030 0.93814 1.21522 0.98684 0.95663 0.98006 1.21161 0.98166 0.97401 0.94619 1.21772 1.01842 0.97081 0.99052 1.21510 1.01766 0.95948 0.94706 1.21833 0.98607 0.97897 0.98622 1.22196 0.84412 0.99544 0.93744 0.92271 0.94701 0.89879 0.88062 0.91477 0.91841 0.90840 0.83351 0.87529 0.93447 0.90334 0.90429 0.89944 0.93216 0.91824 0.91532 0.92913 0.90212 0.92195 0.94164 0.94398 0.85854 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.03 71.98 0.72 -4.16 16 2 C 0.08 3.32 5.28 86.38 0.46 3.78 16 3 N -0.45 -22.36 2.54 -635.56 -1.62 -23.98 16 4 C -0.33 -18.60 8.87 84.04 0.75 -17.86 16 5 H 0.06 3.52 7.78 -2.91 -0.02 3.50 16 6 C 0.00 0.19 5.37 84.93 0.46 0.64 16 7 N -0.89 -47.43 10.74 21.66 0.23 -47.19 16 8 Si 0.98 43.58 29.55 68.60 2.03 45.61 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 C 0.46 21.41 6.71 87.66 0.59 22.00 16 13 O -0.62 -34.17 15.82 -3.06 -0.05 -34.21 16 14 C -0.11 -3.55 2.50 -10.42 -0.03 -3.58 16 15 H 0.14 3.53 5.87 -2.39 -0.01 3.52 16 16 C -0.13 -4.45 5.87 30.59 0.18 -4.27 16 17 C 0.51 19.29 7.41 87.90 0.65 19.94 16 18 O -0.58 -25.58 15.12 -3.06 -0.05 -25.62 16 19 N -0.60 -19.20 2.83 -793.66 -2.25 -21.45 16 20 C 0.16 4.43 2.74 44.99 0.12 4.56 16 21 C -0.12 -2.94 5.21 30.59 0.16 -2.78 16 22 C -0.10 -1.81 5.20 30.60 0.16 -1.65 16 23 C -0.09 -1.94 2.72 -10.79 -0.03 -1.97 16 24 C -0.14 -2.14 9.19 71.98 0.66 -1.48 16 25 C -0.10 -2.41 5.20 30.59 0.16 -2.25 16 26 C -0.13 -4.25 5.21 30.59 0.16 -4.09 16 27 C 0.12 3.37 6.53 86.90 0.57 3.94 16 28 H 0.06 1.63 7.07 -2.39 -0.02 1.61 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.10 4.77 5.20 -2.39 -0.01 4.76 16 32 H 0.07 2.36 6.33 -2.38 -0.02 2.35 16 33 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 34 H 0.07 2.97 7.90 -2.39 -0.02 2.95 16 35 H 0.15 3.51 8.14 -2.38 -0.02 3.49 16 36 H 0.11 2.44 8.07 -2.38 -0.02 2.42 16 37 H 0.05 1.44 6.77 -2.39 -0.02 1.43 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.04 1.58 6.80 -2.38 -0.02 1.56 16 48 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.07 2.26 7.39 -2.39 -0.02 2.25 16 Total: -1.00 -74.74 383.44 4.94 -69.79 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.91 Total: 26.27 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.73 Total: 10.78 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -3.63 Total: -92.61 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -0.09 Total: -59.84 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.74 4.94 -69.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066767607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.945 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds