Wall clock time and date at job start Tue Mar 31 2020 13:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 119.99798 * 2 1 4 4 N 1.46504 * 109.46775 * 125.00109 * 3 2 1 5 5 C 1.46502 * 119.99856 * 267.95547 * 4 3 2 6 6 C 1.50704 * 109.47171 * 275.50210 * 5 4 3 7 7 H 1.08007 * 120.00067 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00168 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99821 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00199 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46866 * 90.00113 * 10 8 6 12 12 H 1.48502 * 109.47458 * 210.00076 * 10 8 6 13 13 H 1.48498 * 109.47508 * 330.00669 * 10 8 6 14 14 C 1.34777 * 120.00006 * 87.95871 * 4 3 2 15 15 O 1.21273 * 120.00113 * 4.81984 * 14 4 3 16 16 C 1.50701 * 119.99647 * 184.81748 * 14 4 3 17 17 H 1.08998 * 109.47322 * 316.33947 * 16 14 4 18 18 C 1.52997 * 109.47021 * 76.33886 * 16 14 4 19 19 N 1.46497 * 109.46954 * 196.33436 * 16 14 4 20 20 C 1.34777 * 120.00100 * 154.99944 * 19 16 14 21 21 O 1.21283 * 120.00057 * 0.02562 * 20 19 16 22 22 C 1.50698 * 120.00079 * 179.72490 * 20 19 16 23 23 C 1.52997 * 109.47371 * 300.00426 * 22 20 19 24 24 C 1.53006 * 109.47422 * 180.02562 * 23 22 20 25 25 C 1.52998 * 109.46777 * 59.99794 * 24 23 22 26 26 C 1.52997 * 109.47313 * 300.00273 * 25 24 23 27 27 C 1.52997 * 109.47355 * 59.99991 * 26 25 24 28 28 H 1.08001 * 120.00089 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00279 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00520 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47422 * 5.00489 * 3 2 1 32 32 H 1.08995 * 109.47129 * 244.99940 * 3 2 1 33 33 H 1.08996 * 109.46937 * 35.49911 * 5 4 3 34 34 H 1.09004 * 109.47268 * 155.50386 * 5 4 3 35 35 H 0.96996 * 119.99776 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.47361 * 64.04864 * 18 16 14 37 37 H 1.09004 * 109.47579 * 184.05026 * 18 16 14 38 38 H 1.09003 * 109.47509 * 304.04735 * 18 16 14 39 39 H 0.97006 * 120.00084 * 335.00492 * 19 16 14 40 40 H 1.08999 * 109.47199 * 60.00335 * 22 20 19 41 41 H 1.09008 * 109.47151 * 300.00024 * 23 22 20 42 42 H 1.09003 * 109.47618 * 59.99928 * 23 22 20 43 43 H 1.08994 * 109.46736 * 300.00096 * 24 23 22 44 44 H 1.08996 * 109.47346 * 180.02562 * 24 23 22 45 45 H 1.09008 * 109.46860 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47241 * 60.00611 * 25 24 23 47 47 H 1.08999 * 109.46885 * 300.00035 * 26 25 24 48 48 H 1.09004 * 109.46906 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47279 * 179.97438 * 27 26 25 50 50 H 1.09010 * 109.46652 * 60.00449 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5731 1.9058 2.4121 6 6 2.7745 3.3991 2.3837 7 1 3.1761 3.8732 1.5002 8 6 2.4462 4.1601 3.4855 9 7 1.9577 3.5828 4.5615 10 14 2.6965 6.0109 3.4506 11 1 1.4659 6.6672 2.9403 12 1 2.9840 6.4976 4.8238 13 1 3.8383 6.3393 2.5597 14 6 4.2364 0.8285 0.9942 15 8 4.6145 0.4335 -0.0883 16 6 5.1560 0.7567 2.1859 17 1 5.0941 1.6877 2.7493 18 6 4.7387 -0.4107 3.0824 19 7 6.5328 0.5532 1.7286 20 6 7.5647 0.9466 2.5013 21 8 7.3534 1.4686 3.5754 22 6 8.9811 0.7317 2.0336 23 6 9.2269 -0.7635 1.8217 24 6 10.6651 -0.9818 1.3475 25 6 11.6364 -0.4498 2.4031 26 6 11.3906 1.0454 2.6151 27 6 9.9524 1.2636 3.0892 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9313 33 1 1.5193 1.6845 2.5808 34 1 3.1685 1.4742 3.2167 35 1 1.7271 4.1181 5.3368 36 1 4.8692 -1.3485 2.5422 37 1 5.3577 -0.4192 3.9797 38 1 3.6920 -0.2964 3.3643 39 1 6.7019 0.1355 0.8696 40 1 9.1381 1.2623 1.0946 41 1 9.0699 -1.2942 2.7608 42 1 8.5346 -1.1427 1.0699 43 1 10.8226 -0.4510 0.4086 44 1 10.8401 -2.0469 1.1961 45 1 12.6611 -0.6048 2.0651 46 1 11.4790 -0.9805 3.3420 47 1 11.5481 1.5761 1.6761 48 1 12.0829 1.4244 3.3669 49 1 9.7774 2.3287 3.2406 50 1 9.7950 0.7329 4.0283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359384599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:27 Heat of formation + Delta-G solvation = -81.273861 kcal Electronic energy + Delta-G solvation = -28392.538483 eV Core-core repulsion = 24612.045596 eV Total energy + Delta-G solvation = -3780.492887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28502 -39.24600 -37.52359 -35.68809 -34.62180 -33.44745 -32.27741 -31.60087 -30.83487 -29.74845 -27.54294 -25.93217 -24.37019 -23.27433 -22.72411 -22.26427 -20.36499 -19.81550 -19.66145 -18.59077 -17.27235 -16.64680 -16.29940 -15.68141 -15.50961 -15.00827 -14.90111 -14.62013 -14.41015 -14.32711 -14.21375 -14.00087 -13.41368 -13.14500 -12.81797 -12.73560 -12.43486 -12.32936 -12.30704 -12.03068 -11.92161 -11.52340 -11.40477 -11.35314 -11.26214 -11.19101 -10.98387 -10.88887 -10.76299 -10.74004 -10.53473 -10.23418 -10.21287 -9.76726 -9.43985 -9.34057 -9.02044 -8.73628 -8.54530 -7.85429 -6.18606 -4.26298 2.50263 2.89893 3.13287 3.24547 3.32266 3.36296 3.37551 4.01975 4.35133 4.54047 4.57813 4.61604 5.03874 5.06320 5.08219 5.15952 5.18644 5.27751 5.33633 5.35325 5.39021 5.48278 5.50263 5.57330 5.66651 5.69709 5.86624 5.88994 5.92660 5.95347 6.03174 6.03794 6.09478 6.14091 6.22314 6.27501 6.32193 6.34071 6.45322 6.66432 6.70839 6.87711 7.00663 7.16095 7.44116 7.74654 7.82340 8.01836 8.20131 8.53184 8.69943 8.86374 9.41936 10.88452 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.003806 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.173811 B = 7355.987988 C = 9132.838503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.583 5.583 5 C 0.230 3.770 6 C -0.544 4.544 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.516 3.484 15 O -0.574 6.574 16 C 0.124 3.876 17 H 0.127 0.873 18 C -0.153 4.153 19 N -0.712 5.712 20 C 0.515 3.485 21 O -0.534 6.534 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.100 4.100 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.742 -9.520 -5.645 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.312 5.312 5 C 0.110 3.890 6 C -0.582 4.582 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.725 3.275 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.303 3.697 15 O -0.456 6.456 16 C 0.017 3.983 17 H 0.144 0.856 18 C -0.211 4.211 19 N -0.365 5.365 20 C 0.301 3.699 21 O -0.410 6.410 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.138 4.138 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.241 0.759 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.678 -9.276 -5.211 15.798 hybrid contribution -0.068 0.900 -0.283 0.946 sum 11.610 -8.375 -5.494 15.334 Atomic orbital electron populations 1.23781 0.95769 1.01623 1.01596 1.23356 0.96093 0.99176 0.98967 1.20437 0.92223 0.94937 0.90386 1.48165 1.11319 1.56943 1.14789 1.19651 0.96989 0.93620 0.78720 1.21442 1.44284 0.91810 1.00676 0.92108 1.24915 0.94514 0.99039 0.95087 1.69908 1.42499 1.36102 1.04024 0.86500 0.78603 0.84871 0.77560 1.20516 1.20931 1.19777 1.20414 0.82812 0.77221 0.89281 1.90562 1.75683 1.51288 1.28055 1.20813 0.80771 1.02633 0.94131 0.85579 1.22074 1.03055 0.96549 0.99464 1.45838 1.04978 1.62614 1.23083 1.20624 0.86827 0.77745 0.84732 1.90733 1.85713 1.42608 1.21990 1.21327 0.91823 0.98232 1.01144 1.21535 0.97246 0.93987 1.02104 1.21524 0.94289 1.00921 0.98745 1.21564 0.98796 0.96204 0.99319 1.21562 0.96583 0.96216 1.01351 1.21344 0.92692 1.01954 0.97763 0.88367 0.88868 0.87880 0.89514 0.90145 0.94441 0.93424 0.92427 0.92663 0.91259 0.90344 0.75928 0.88664 0.91327 0.91326 0.91766 0.91767 0.92152 0.91915 0.91987 0.91783 0.91113 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.02 0.42 -2.25 16 2 C -0.16 -2.50 9.84 -36.02 -0.35 -2.86 16 3 C 0.14 2.61 5.88 -5.19 -0.03 2.58 16 4 N -0.58 -12.02 2.44 -176.43 -0.43 -12.45 16 5 C 0.23 5.40 4.64 -5.19 -0.02 5.37 16 6 C -0.54 -14.28 9.38 -34.44 -0.32 -14.60 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 10 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.52 10.39 6.93 -10.98 -0.08 10.32 16 15 O -0.57 -11.95 15.46 5.56 0.09 -11.87 16 16 C 0.12 2.35 2.12 -69.08 -0.15 2.21 16 17 H 0.13 2.84 6.55 -51.93 -0.34 2.50 16 18 C -0.15 -2.58 9.11 37.16 0.34 -2.24 16 19 N -0.71 -11.62 4.92 -54.94 -0.27 -11.89 16 20 C 0.51 8.38 7.12 -10.99 -0.08 8.30 16 21 O -0.53 -10.85 15.64 5.55 0.09 -10.77 16 22 C -0.10 -1.24 2.53 -91.78 -0.23 -1.47 16 23 C -0.11 -1.09 5.10 -26.73 -0.14 -1.22 16 24 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 25 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 26 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 27 C -0.10 -1.16 4.49 -26.73 -0.12 -1.28 16 28 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 29 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.09 1.58 7.71 -51.93 -0.40 1.18 16 32 H 0.08 1.46 7.42 -51.93 -0.39 1.08 16 33 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 34 H 0.05 1.15 4.67 -51.93 -0.24 0.91 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.37 6.51 -51.93 -0.34 1.03 16 39 H 0.40 5.99 7.15 -40.82 -0.29 5.70 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.07 0.64 7.57 -51.93 -0.39 0.25 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 50 H 0.07 0.89 8.10 -51.92 -0.42 0.47 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -29.86 400.68 -8.80 -38.66 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.68 Total: 9.07 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.34 Total: 1.12 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.03 Total: -48.30 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.17 Total: -22.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.86 -8.80 -38.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.613 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds