Wall clock time and date at job start Tue Mar 31 2020 13:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 119.99798 * 2 1 4 4 N 1.46504 * 109.46775 * 125.00109 * 3 2 1 5 5 C 1.46502 * 119.99856 * 267.95547 * 4 3 2 6 6 C 1.50704 * 109.47171 * 275.50210 * 5 4 3 7 7 H 1.08007 * 120.00067 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00168 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99821 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00199 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46866 * 90.00113 * 10 8 6 12 12 H 1.48502 * 109.47458 * 210.00076 * 10 8 6 13 13 H 1.48498 * 109.47508 * 330.00669 * 10 8 6 14 14 C 1.34777 * 120.00006 * 87.95871 * 4 3 2 15 15 O 1.21273 * 120.00113 * 4.81984 * 14 4 3 16 16 C 1.50701 * 119.99647 * 184.81748 * 14 4 3 17 17 H 1.08998 * 109.47322 * 316.33947 * 16 14 4 18 18 C 1.52997 * 109.47021 * 76.33886 * 16 14 4 19 19 N 1.46497 * 109.46954 * 196.33436 * 16 14 4 20 20 C 1.34777 * 120.00100 * 154.99944 * 19 16 14 21 21 O 1.21283 * 120.00057 * 0.02562 * 20 19 16 22 22 C 1.50698 * 120.00079 * 179.72490 * 20 19 16 23 23 C 1.52997 * 109.47371 * 300.00426 * 22 20 19 24 24 C 1.53006 * 109.47422 * 180.02562 * 23 22 20 25 25 C 1.52998 * 109.46777 * 59.99794 * 24 23 22 26 26 C 1.52997 * 109.47313 * 300.00273 * 25 24 23 27 27 C 1.52997 * 109.47355 * 59.99991 * 26 25 24 28 28 H 1.08001 * 120.00089 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00279 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00520 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47422 * 5.00489 * 3 2 1 32 32 H 1.08995 * 109.47129 * 244.99940 * 3 2 1 33 33 H 1.08996 * 109.46937 * 35.49911 * 5 4 3 34 34 H 1.09004 * 109.47268 * 155.50386 * 5 4 3 35 35 H 0.96996 * 119.99776 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.47361 * 64.04864 * 18 16 14 37 37 H 1.09004 * 109.47579 * 184.05026 * 18 16 14 38 38 H 1.09003 * 109.47509 * 304.04735 * 18 16 14 39 39 H 0.97006 * 120.00084 * 335.00492 * 19 16 14 40 40 H 1.08999 * 109.47199 * 60.00335 * 22 20 19 41 41 H 1.09008 * 109.47151 * 300.00024 * 23 22 20 42 42 H 1.09003 * 109.47618 * 59.99928 * 23 22 20 43 43 H 1.08994 * 109.46736 * 300.00096 * 24 23 22 44 44 H 1.08996 * 109.47346 * 180.02562 * 24 23 22 45 45 H 1.09008 * 109.46860 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47241 * 60.00611 * 25 24 23 47 47 H 1.08999 * 109.46885 * 300.00035 * 26 25 24 48 48 H 1.09004 * 109.46906 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47279 * 179.97438 * 27 26 25 50 50 H 1.09010 * 109.46652 * 60.00449 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5731 1.9058 2.4121 6 6 2.7745 3.3991 2.3837 7 1 3.1761 3.8732 1.5002 8 6 2.4462 4.1601 3.4855 9 7 1.9577 3.5828 4.5615 10 14 2.6965 6.0109 3.4506 11 1 1.4659 6.6672 2.9403 12 1 2.9840 6.4976 4.8238 13 1 3.8383 6.3393 2.5597 14 6 4.2364 0.8285 0.9942 15 8 4.6145 0.4335 -0.0883 16 6 5.1560 0.7567 2.1859 17 1 5.0941 1.6877 2.7493 18 6 4.7387 -0.4107 3.0824 19 7 6.5328 0.5532 1.7286 20 6 7.5647 0.9466 2.5013 21 8 7.3534 1.4686 3.5754 22 6 8.9811 0.7317 2.0336 23 6 9.2269 -0.7635 1.8217 24 6 10.6651 -0.9818 1.3475 25 6 11.6364 -0.4498 2.4031 26 6 11.3906 1.0454 2.6151 27 6 9.9524 1.2636 3.0892 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9313 33 1 1.5193 1.6845 2.5808 34 1 3.1685 1.4742 3.2167 35 1 1.7271 4.1181 5.3368 36 1 4.8692 -1.3485 2.5422 37 1 5.3577 -0.4192 3.9797 38 1 3.6920 -0.2964 3.3643 39 1 6.7019 0.1355 0.8696 40 1 9.1381 1.2623 1.0946 41 1 9.0699 -1.2942 2.7608 42 1 8.5346 -1.1427 1.0699 43 1 10.8226 -0.4510 0.4086 44 1 10.8401 -2.0469 1.1961 45 1 12.6611 -0.6048 2.0651 46 1 11.4790 -0.9805 3.3420 47 1 11.5481 1.5761 1.6761 48 1 12.0829 1.4244 3.3669 49 1 9.7774 2.3287 3.2406 50 1 9.7950 0.7329 4.0283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359384599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:27 Heat of formation + Delta-G solvation = -97.726234 kcal Electronic energy + Delta-G solvation = -28393.251912 eV Core-core repulsion = 24612.045596 eV Total energy + Delta-G solvation = -3781.206316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68423 -40.66457 -38.54085 -37.28073 -36.15439 -35.09684 -34.01494 -32.69379 -31.62649 -30.94507 -29.43603 -27.43674 -25.73643 -24.88756 -23.82546 -23.33659 -21.48151 -21.14798 -20.65687 -20.04091 -18.84057 -18.45159 -17.89092 -17.22700 -16.73000 -16.44417 -16.29601 -16.11831 -15.92572 -15.47344 -15.07669 -14.99798 -14.67494 -14.53942 -14.38868 -14.09486 -13.91661 -13.53986 -13.47203 -13.25339 -13.19179 -13.06197 -12.99205 -12.86798 -12.60061 -12.59061 -12.26821 -12.22436 -12.14448 -12.02620 -11.69508 -11.54122 -11.33963 -11.01638 -10.95684 -10.68829 -10.61895 -10.32626 -10.17298 -9.58018 -8.25195 -6.39425 1.25577 1.36338 1.38907 1.45798 1.50678 1.64020 1.97700 2.34477 2.53470 3.06123 3.44665 3.59850 3.75040 3.79984 4.03354 4.09958 4.14911 4.20451 4.25975 4.29527 4.33591 4.44730 4.49474 4.56647 4.60505 4.60954 4.72571 4.76354 4.81068 4.85761 4.98177 5.01867 5.03282 5.13709 5.15799 5.18911 5.26566 5.27218 5.32019 5.38039 5.41781 5.54888 5.57920 5.66987 5.69922 5.89094 5.99784 6.44548 6.51005 6.72224 7.10523 7.22776 7.33060 8.80645 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.003806 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.173811 B = 7355.987988 C = 9132.838503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.141 3.859 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.554 4.554 7 H 0.050 0.950 8 C 0.024 3.976 9 N -0.915 5.915 10 Si 0.953 3.047 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.516 3.484 15 O -0.578 6.578 16 C 0.129 3.871 17 H 0.086 0.914 18 C -0.142 4.142 19 N -0.704 5.704 20 C 0.511 3.489 21 O -0.581 6.581 22 C -0.096 4.096 23 C -0.107 4.107 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.099 4.099 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 -10.426 -7.072 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.019 3.981 4 N -0.315 5.315 5 C 0.126 3.874 6 C -0.593 4.593 7 H 0.069 0.931 8 C -0.177 4.177 9 N -0.553 5.553 10 Si 0.779 3.221 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.303 3.697 15 O -0.461 6.461 16 C 0.020 3.980 17 H 0.104 0.896 18 C -0.201 4.201 19 N -0.358 5.358 20 C 0.299 3.701 21 O -0.460 6.460 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.151 4.151 27 C -0.137 4.137 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.253 0.747 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.546 -10.201 -6.683 17.496 hybrid contribution -0.390 1.183 0.140 1.253 sum 12.156 -9.018 -6.543 16.490 Atomic orbital electron populations 1.24034 0.95076 1.03052 0.98156 1.23164 0.96700 0.97864 1.02070 1.20541 0.91919 0.96375 0.89253 1.48130 1.12046 1.56833 1.14507 1.19247 0.95877 0.92345 0.79896 1.21669 1.43952 0.93330 1.00315 0.93133 1.25613 0.94341 1.02917 0.94828 1.69989 1.43342 1.37488 1.04515 0.85624 0.78694 0.80359 0.77458 1.19200 1.20648 1.20124 1.20539 0.82715 0.76950 0.89456 1.90548 1.75702 1.51606 1.28209 1.20587 0.82137 1.01641 0.93642 0.89576 1.21975 1.02267 0.96695 0.99150 1.45802 1.03987 1.62509 1.23493 1.21504 0.88337 0.76337 0.83920 1.90711 1.86518 1.44651 1.24109 1.21386 0.88430 1.00311 1.01559 1.21548 0.99088 0.91802 1.02089 1.21525 0.92516 1.02057 0.98956 1.21576 0.99846 0.95082 0.99286 1.21538 0.94322 0.97399 1.01884 1.21333 0.94759 1.00380 0.97258 0.88048 0.86223 0.87756 0.89996 0.90379 0.95693 0.94366 0.92249 0.90359 0.91604 0.91235 0.74743 0.87037 0.92119 0.90599 0.90794 0.90291 0.90337 0.92344 0.91014 0.91132 0.93150 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 14.32 67.79 0.97 -3.33 16 2 C -0.18 -5.53 9.84 25.65 0.25 -5.28 16 3 C 0.14 5.15 5.88 85.63 0.50 5.65 16 4 N -0.59 -24.58 2.44 -830.49 -2.03 -26.61 16 5 C 0.25 11.95 4.64 85.63 0.40 12.35 16 6 C -0.55 -29.79 9.38 25.60 0.24 -29.55 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 8 C 0.02 1.31 5.46 84.65 0.46 1.77 16 9 N -0.91 -51.68 13.29 21.45 0.28 -51.40 16 10 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.52 20.99 6.93 87.66 0.61 21.60 16 15 O -0.58 -23.79 15.46 -3.01 -0.05 -23.84 16 16 C 0.13 5.00 2.12 44.25 0.09 5.10 16 17 H 0.09 4.10 6.55 -2.39 -0.02 4.09 16 18 C -0.14 -4.88 9.11 71.98 0.66 -4.22 16 19 N -0.70 -23.14 4.92 -446.11 -2.20 -25.33 16 20 C 0.51 16.95 7.12 87.66 0.62 17.57 16 21 O -0.58 -24.71 15.64 -3.04 -0.05 -24.76 16 22 C -0.10 -2.22 2.53 -11.54 -0.03 -2.25 16 23 C -0.11 -1.92 5.10 30.60 0.16 -1.77 16 24 C -0.11 -1.49 5.92 30.60 0.18 -1.31 16 25 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 26 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 27 C -0.10 -2.31 4.49 30.59 0.14 -2.18 16 28 H 0.10 2.58 7.84 -2.91 -0.02 2.56 16 29 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.10 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.08 3.01 7.71 -2.39 -0.02 2.99 16 32 H 0.08 2.84 7.42 -2.39 -0.02 2.82 16 33 H 0.03 1.27 8.11 -2.39 -0.02 1.25 16 34 H 0.04 1.93 4.67 -2.38 -0.01 1.92 16 35 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.49 6.51 -2.39 -0.02 2.48 16 39 H 0.41 11.94 7.15 -92.70 -0.66 11.28 16 40 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.08 1.26 7.57 -2.39 -0.02 1.24 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 50 H 0.05 1.43 8.10 -2.38 -0.02 1.41 16 Total: -1.00 -65.25 400.68 3.85 -61.40 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.25 Total: 33.90 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.62 Total: 11.05 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.94 Total: -103.34 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -0.09 Total: -48.60 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.25 3.85 -61.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.327 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds