Wall clock time and date at job start Tue Mar 31 2020 13:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 120.00215 * 2 1 4 4 N 1.34781 * 119.99952 * 179.97438 * 2 1 3 5 5 C 1.47628 * 118.66406 * 3.20886 * 4 2 1 6 6 C 1.53941 * 112.13764 * 222.14713 * 5 4 2 7 7 C 1.50884 * 110.09338 * 40.54419 * 6 5 4 8 8 C 1.52563 * 109.36278 * 268.11695 * 7 6 5 9 9 C 1.47091 * 114.32701 * 85.01068 * 8 7 6 10 10 C 1.44574 * 118.64132 * 183.18846 * 4 2 1 11 11 H 1.09004 * 109.44944 * 209.28654 * 10 4 2 12 12 C 1.53006 * 109.45030 * 329.22866 * 10 4 2 13 13 C 1.53035 * 109.46047 * 307.01174 * 12 10 4 14 14 C 1.53195 * 109.31254 * 178.61257 * 13 12 10 15 15 N 1.46923 * 108.77567 * 54.63709 * 14 13 12 16 16 C 1.34775 * 120.63441 * 126.36963 * 15 14 13 17 17 O 1.21683 * 120.00045 * 174.95314 * 16 15 14 18 18 C 1.46376 * 119.99597 * 354.94868 * 16 15 14 19 19 H 1.07999 * 120.00100 * 5.17217 * 18 16 15 20 20 C 1.40045 * 119.99714 * 185.17000 * 18 16 15 21 21 N 1.30672 * 120.00170 * 184.98890 * 20 18 16 22 22 Si 1.86800 * 120.00386 * 4.98476 * 20 18 16 23 23 H 1.48496 * 109.47438 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46855 * 59.99824 * 22 20 18 25 25 H 1.48505 * 109.47148 * 300.00672 * 22 20 18 26 26 C 1.46934 * 118.73667 * 306.64453 * 15 14 13 27 27 C 1.52762 * 109.00821 * 53.30808 * 26 15 14 28 28 H 1.08999 * 109.47387 * 270.00225 * 1 2 3 29 29 H 1.09002 * 109.47503 * 30.00035 * 1 2 3 30 30 H 1.09001 * 109.47148 * 150.00491 * 1 2 3 31 31 H 1.09005 * 108.96436 * 101.45085 * 5 4 2 32 32 H 1.09000 * 108.86177 * 342.78013 * 5 4 2 33 33 H 1.09003 * 109.36955 * 280.36034 * 6 5 4 34 34 H 1.08992 * 109.36894 * 160.73327 * 6 5 4 35 35 H 1.09000 * 109.49103 * 148.14367 * 7 6 5 36 36 H 1.09004 * 109.49110 * 28.08280 * 7 6 5 37 37 H 1.09004 * 108.51480 * 323.75422 * 8 7 6 38 38 H 1.09004 * 108.39065 * 206.17700 * 8 7 6 39 39 H 1.09003 * 109.32733 * 176.93690 * 9 8 7 40 40 H 1.08996 * 109.19123 * 57.37184 * 9 8 7 41 41 H 1.08999 * 109.44835 * 66.97871 * 12 10 4 42 42 H 1.09006 * 109.49776 * 58.66233 * 13 12 10 43 43 H 1.09003 * 109.52405 * 298.57732 * 13 12 10 44 44 H 1.09001 * 109.58761 * 294.84716 * 14 13 12 45 45 H 1.09000 * 109.58710 * 174.42071 * 14 13 12 46 46 H 0.97001 * 119.99508 * 354.99552 * 21 20 18 47 47 H 1.08999 * 109.58731 * 173.14476 * 26 15 14 48 48 H 1.09004 * 109.58227 * 293.56755 * 26 15 14 49 49 H 1.08996 * 109.55905 * 185.55368 * 27 26 15 50 50 H 1.08995 * 109.38557 * 65.51611 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4149 -2.4272 -0.0714 6 6 1.9698 -3.4988 0.8843 7 6 2.3571 -2.8696 2.1999 8 6 3.8270 -2.4637 2.1531 9 6 4.0720 -1.1430 1.5536 10 6 3.6245 -1.1339 0.0711 11 1 4.0330 -2.0077 -0.4367 12 6 4.1386 0.1368 -0.6086 13 6 3.5552 0.2318 -2.0201 14 6 4.0444 1.5225 -2.6848 15 7 5.5125 1.5528 -2.6354 16 6 6.2338 1.7359 -3.7590 17 8 7.4434 1.8510 -3.6935 18 6 5.5621 1.7963 -5.0581 19 1 4.4835 1.7781 -5.1097 20 6 6.3181 1.8777 -6.2342 21 7 5.7202 2.0298 -7.3861 22 14 8.1813 1.7690 -6.1562 23 1 8.7416 1.8818 -7.5268 24 1 8.5768 0.4654 -5.5650 25 1 8.7069 2.8739 -5.3146 26 6 6.1795 1.3735 -1.3385 27 6 5.6662 0.0901 -0.6882 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.4547 -2.8082 -1.0919 32 1 0.3763 -2.2236 0.1896 33 1 2.8465 -3.9651 0.4347 34 1 1.2075 -4.2584 1.0575 35 1 2.2035 -3.5875 3.0056 36 1 1.7416 -1.9875 2.3763 37 1 4.3745 -3.2113 1.5791 38 1 4.2150 -2.4588 3.1717 39 1 5.1359 -0.9127 1.6107 40 1 3.5097 -0.3894 2.1048 41 1 3.8317 1.0077 -0.0294 42 1 2.4666 0.2415 -1.9640 43 1 3.8816 -0.6263 -2.6077 44 1 3.6429 2.3835 -2.1504 45 1 3.7132 1.5471 -3.7229 46 1 4.7516 2.0135 -7.4356 47 1 7.2566 1.3000 -1.4886 48 1 5.9557 2.2222 -0.6921 49 1 6.0803 -0.0011 0.3160 50 1 5.9732 -0.7670 -1.2875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368519699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:25 Heat of formation + Delta-G solvation = -72.564473 kcal Electronic energy + Delta-G solvation = -29762.666620 eV Core-core repulsion = 25982.551400 eV Total energy + Delta-G solvation = -3780.115220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19433 -38.52373 -37.70842 -36.26216 -34.21995 -33.62578 -32.85580 -31.06110 -30.64755 -29.78647 -27.06861 -26.25178 -25.53512 -23.11997 -22.54172 -22.05224 -20.75504 -20.32925 -19.02878 -18.68883 -17.34547 -16.70464 -16.54034 -16.02771 -15.47302 -15.05704 -14.77621 -14.67385 -14.33639 -13.97714 -13.89277 -13.70007 -13.43409 -13.32666 -13.07746 -12.84115 -12.66011 -12.58021 -12.48539 -11.97579 -11.95238 -11.84198 -11.70414 -11.52538 -11.31569 -11.12888 -10.90834 -10.84512 -10.56774 -10.52758 -10.28616 -10.13787 -10.01077 -9.96958 -8.97942 -8.89189 -8.82221 -8.64502 -7.78830 -7.42313 -6.91027 -4.83095 2.56633 2.89114 3.64742 3.73573 4.11101 4.25781 4.35834 4.41073 4.43822 4.53304 4.62819 4.69880 4.78357 4.82412 4.92167 4.97470 5.16018 5.20963 5.22485 5.30413 5.36111 5.45493 5.49446 5.54475 5.56014 5.64213 5.68311 5.75610 5.80247 5.86501 5.90075 5.95214 5.96051 6.05264 6.10001 6.15147 6.31862 6.41080 6.49444 6.52422 6.57247 6.58928 6.70388 7.01697 7.34005 7.41435 7.84166 7.92479 8.22544 8.23310 8.92590 9.11901 10.15132 10.40861 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.003602 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.037855 B = 7771.077785 C = 8261.387034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.506 3.494 3 O -0.524 6.524 4 N -0.601 5.601 5 C 0.104 3.896 6 C -0.133 4.133 7 C -0.114 4.114 8 C -0.118 4.118 9 C -0.131 4.131 10 C 0.157 3.843 11 H 0.075 0.925 12 C -0.103 4.103 13 C -0.111 4.111 14 C 0.127 3.873 15 N -0.631 5.631 16 C 0.555 3.445 17 O -0.620 6.620 18 C -0.597 4.597 19 H 0.075 0.925 20 C 0.060 3.940 21 N -0.836 5.836 22 Si 1.131 2.869 23 H -0.324 1.324 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.122 3.878 27 C -0.129 4.129 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.276 0.724 47 H 0.082 0.918 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.409 -12.387 19.603 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.295 3.705 3 O -0.401 6.401 4 N -0.334 5.334 5 C -0.019 4.019 6 C -0.171 4.171 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.169 4.169 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.121 4.121 13 C -0.150 4.150 14 C 0.003 3.997 15 N -0.365 5.365 16 C 0.365 3.635 17 O -0.513 6.513 18 C -0.633 4.633 19 H 0.093 0.907 20 C -0.157 4.157 21 N -0.464 5.464 22 Si 0.964 3.036 23 H -0.256 1.256 24 H -0.220 1.220 25 H -0.208 1.208 26 C -0.002 4.002 27 C -0.168 4.168 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.231 -11.700 18.716 24.765 hybrid contribution -1.888 -0.423 1.026 2.190 sum -13.119 -12.123 19.742 26.623 Atomic orbital electron populations 1.22066 0.92789 1.04808 1.04346 1.20738 0.90304 0.83706 0.75724 1.90660 1.68738 1.31729 1.48935 1.47780 1.06581 1.05800 1.73233 1.22063 0.95640 0.84363 0.99793 1.21777 1.01919 0.97514 0.95873 1.21053 0.96804 1.00522 0.96810 1.20478 0.96308 0.97898 1.00895 1.21274 1.02169 0.97417 0.96054 1.21179 0.78839 0.99623 0.95019 0.90731 1.21984 0.93991 0.98881 0.97288 1.21867 0.99291 0.98595 0.95236 1.21388 0.81211 0.95750 1.01378 1.47703 1.05434 1.76736 1.06585 1.18455 0.85830 0.75188 0.84019 1.90108 1.15532 1.60671 1.85030 1.22146 0.95557 1.55104 0.90531 0.90666 1.27150 1.09672 0.88118 0.90737 1.70663 1.12940 1.35894 1.26928 0.82368 0.71361 0.78898 0.70989 1.25612 1.21987 1.20848 1.21072 0.98551 0.95153 0.85391 1.22004 0.95730 0.99225 0.99859 0.89227 0.88982 0.90155 0.91660 0.89721 0.91320 0.90705 0.92061 0.91798 0.92286 0.92574 0.90454 0.91858 0.85950 0.92358 0.93184 0.93489 0.89509 0.91359 0.89929 0.93778 0.91898 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.36 36.00 0.34 -1.01 16 2 C 0.51 5.76 5.86 -10.99 -0.06 5.70 16 3 O -0.52 -8.02 12.22 5.55 0.07 -7.95 16 4 N -0.60 -6.01 1.83 -164.89 -0.30 -6.31 16 5 C 0.10 0.71 5.79 -2.93 -0.02 0.69 16 6 C -0.13 -0.80 5.71 -27.30 -0.16 -0.95 16 7 C -0.11 -0.77 5.51 -28.02 -0.15 -0.93 16 8 C -0.12 -0.96 5.15 -29.79 -0.15 -1.11 16 9 C -0.13 -1.33 5.01 -28.59 -0.14 -1.47 16 10 C 0.16 1.83 1.57 -67.97 -0.11 1.72 16 11 H 0.07 0.88 8.06 -51.93 -0.42 0.47 16 12 C -0.10 -1.55 1.08 -90.58 -0.10 -1.65 16 13 C -0.11 -1.91 4.54 -26.61 -0.12 -2.03 16 14 C 0.13 2.62 6.35 -3.71 -0.02 2.60 16 15 N -0.63 -14.83 2.98 -174.68 -0.52 -15.35 16 16 C 0.56 15.69 7.46 -12.99 -0.10 15.60 16 17 O -0.62 -18.74 11.49 5.20 0.06 -18.68 16 18 C -0.60 -17.53 9.30 -35.63 -0.33 -17.86 16 19 H 0.08 2.17 5.85 -52.49 -0.31 1.86 16 20 C 0.06 1.80 5.52 -17.37 -0.10 1.70 16 21 N -0.84 -24.84 13.64 55.55 0.76 -24.08 16 22 Si 1.13 31.07 25.98 -169.99 -4.42 26.65 16 23 H -0.32 -8.53 7.11 56.52 0.40 -8.13 16 24 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 25 H -0.28 -7.98 6.78 56.52 0.38 -7.60 16 26 C 0.12 2.45 6.39 -3.93 -0.03 2.42 16 27 C -0.13 -2.07 5.18 -26.83 -0.14 -2.21 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.43 6.12 -51.93 -0.32 0.12 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.41 5.52 -51.93 -0.29 0.12 16 33 H 0.07 0.46 7.32 -51.93 -0.38 0.08 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 37 H 0.06 0.48 7.36 -51.93 -0.38 0.09 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.80 6.21 -51.93 -0.32 0.48 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.12 2.08 5.42 -53.49 -0.29 1.79 16 42 H 0.06 0.94 5.36 -51.93 -0.28 0.66 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 1.94 5.30 -51.93 -0.28 1.66 16 46 H 0.28 7.86 8.72 -40.82 -0.36 7.50 16 47 H 0.08 1.78 7.04 -51.93 -0.37 1.42 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.85 6.37 -51.93 -0.33 0.52 16 50 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -34.56 360.58 -8.47 -43.03 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -8.16 Total: -3.96 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.39 Total: 1.21 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.06 Total: -45.74 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: 0.13 Total: -26.63 kcal Atomic # 14 Polarization: 31.07 SS G_CDS: -4.42 Total: 26.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.56 -8.47 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368519699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.532 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds