Wall clock time and date at job start Tue Mar 31 2020 13:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.50692 * 109.47004 * 240.00046 * 2 1 3 5 5 O 1.21286 * 120.00379 * 240.00148 * 4 2 1 6 6 N 1.34777 * 120.00417 * 59.99757 * 4 2 1 7 7 C 1.46502 * 120.00393 * 180.02562 * 6 4 2 8 8 C 1.53956 * 113.57818 * 252.72151 * 7 6 4 9 9 C 1.52912 * 86.77920 * 220.66305 * 8 7 6 10 10 C 1.52902 * 121.13500 * 150.62358 * 9 8 7 11 11 C 1.53952 * 86.78610 * 100.81853 * 10 9 8 12 12 N 1.46497 * 113.65282 * 139.34549 * 11 10 9 13 13 C 1.36943 * 119.99749 * 107.24438 * 12 11 10 14 14 H 1.08001 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00149 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99865 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47278 * 59.99561 * 17 15 13 19 19 H 1.48499 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47062 * 299.99741 * 17 15 13 21 21 C 1.52909 * 121.13442 * 259.18124 * 9 8 7 22 22 C 1.52906 * 88.04227 * 24.89946 * 9 8 7 23 23 C 1.53002 * 109.47000 * 119.99932 * 2 1 3 24 24 H 1.08993 * 110.55151 * 62.87996 * 23 2 1 25 25 C 1.54991 * 110.61707 * 299.99786 * 23 2 1 26 26 C 1.54810 * 102.09350 * 204.31975 * 25 23 2 27 27 C 1.54106 * 104.18526 * 20.88072 * 26 25 23 28 28 O 1.43745 * 107.29161 * 2.03378 * 27 26 25 29 29 H 1.08994 * 109.47196 * 59.99704 * 1 2 3 30 30 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47098 * 300.00208 * 1 2 3 32 32 H 0.97004 * 119.99661 * 0.02562 * 6 4 2 33 33 H 1.08995 * 112.82077 * 23.90812 * 7 6 4 34 34 H 1.08996 * 113.66120 * 335.13501 * 8 7 6 35 35 H 1.08994 * 113.66188 * 106.19097 * 8 7 6 36 36 H 1.09007 * 113.66424 * 215.28589 * 10 9 8 37 37 H 1.09006 * 113.66623 * 346.34466 * 10 9 8 38 38 H 1.09001 * 113.57582 * 270.13360 * 11 10 9 39 39 H 0.96998 * 119.99864 * 287.24524 * 12 11 10 40 40 H 0.97001 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.09000 * 113.66220 * 13.65250 * 21 9 8 42 42 H 1.08996 * 113.66228 * 144.61460 * 21 9 8 43 43 H 1.08997 * 113.66364 * 220.62701 * 22 9 8 44 44 H 1.08999 * 113.66093 * 89.57298 * 22 9 8 45 45 H 1.09005 * 110.90880 * 86.12205 * 25 23 2 46 46 H 1.09001 * 110.94109 * 322.52741 * 25 23 2 47 47 H 1.09000 * 110.49118 * 262.21058 * 26 25 23 48 48 H 1.08999 * 110.49045 * 139.55798 * 26 25 23 49 49 H 1.09004 * 109.87542 * 121.45649 * 27 26 25 50 50 H 1.09000 * 109.87721 * 242.60820 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 2.1946 -0.9409 -3.6507 8 6 3.3025 -0.1745 -4.3958 9 6 2.6088 -0.6019 -5.6897 10 6 2.6851 0.2606 -6.9499 11 6 3.7675 -0.7147 -7.4472 12 7 3.6551 -1.0414 -8.8708 13 6 4.5565 -0.5274 -9.7645 14 1 5.3505 0.1184 -9.4196 15 6 4.4503 -0.8373 -11.1133 16 7 3.4829 -1.6248 -11.5335 17 14 5.6802 -0.1368 -12.3323 18 1 7.0483 -0.5847 -11.9678 19 1 5.3499 -0.6148 -13.6989 20 1 5.6199 1.3467 -12.2992 21 6 3.1375 -1.7711 -6.5213 22 6 1.3101 -0.7228 -4.8917 23 6 2.0400 -0.7213 1.2493 24 1 1.7289 -1.7658 1.2418 25 6 1.5381 -0.0114 2.5324 26 6 2.6014 -0.4354 3.5746 27 6 3.8199 -0.8462 2.7253 28 8 3.4768 -0.6193 1.3480 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1493 0.5389 -2.5435 33 1 2.4356 -1.9876 -3.4656 34 1 3.2820 0.9016 -4.2233 35 1 4.2950 -0.6065 -4.2683 36 1 1.7735 0.2440 -7.5474 37 1 3.0556 1.2695 -6.7679 38 1 4.7786 -0.4285 -7.1575 39 1 2.9422 -1.6217 -9.1804 40 1 3.4090 -1.8417 -12.4761 41 1 3.8694 -2.3854 -5.9967 42 1 2.3530 -2.3597 -6.9968 43 1 0.7109 -1.5928 -5.1603 44 1 0.7296 0.1992 -4.8586 45 1 0.5497 -0.3732 2.8158 46 1 1.5315 1.0708 2.4017 47 1 2.2437 -1.2807 4.1624 48 1 2.8542 0.4025 4.2243 49 1 4.6830 -0.2385 2.9973 50 1 4.0426 -1.9015 2.8829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964987708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:00 Heat of formation + Delta-G solvation = -39.381193 kcal Electronic energy + Delta-G solvation = -27136.193021 eV Core-core repulsion = 23357.516736 eV Total energy + Delta-G solvation = -3778.676285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72348 -39.98763 -38.77500 -35.81727 -34.46869 -33.47556 -32.31256 -31.90891 -29.50003 -28.32643 -25.71786 -25.41188 -25.15567 -24.08143 -23.00443 -21.95088 -21.22012 -20.27670 -19.88847 -17.84675 -17.47645 -16.95016 -16.66230 -16.45167 -15.81463 -15.80266 -15.21487 -14.71207 -14.65018 -14.37998 -14.00776 -13.79967 -13.57832 -13.38736 -12.85187 -12.76739 -12.59162 -12.48050 -12.27875 -12.15523 -12.03710 -11.98317 -11.62801 -11.55182 -11.37639 -11.26324 -11.05854 -10.95058 -10.83620 -10.65818 -10.33300 -10.06564 -9.88860 -9.78350 -9.72288 -9.67889 -9.28976 -8.97574 -8.81821 -6.91406 -5.74598 -3.02834 2.57693 3.05782 3.45944 3.48121 3.50196 3.51296 4.11071 4.24935 4.47025 4.51282 4.59234 4.60264 4.63279 4.72086 4.79074 4.84086 4.86737 4.96169 4.96971 5.12063 5.23096 5.28622 5.30847 5.42900 5.44681 5.46272 5.49579 5.58785 5.63267 5.66031 5.74418 5.77015 5.84389 5.96632 6.00064 6.04260 6.18258 6.25461 6.28598 6.41370 6.47458 6.58715 6.65879 6.69060 6.98449 7.18587 7.44960 7.72778 8.18616 8.44424 9.55204 10.14357 10.48851 11.47859 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.034697 B = 0.001912 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.798609 B =14641.666724 C =15035.335779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.104 0.896 4 C 0.517 3.483 5 O -0.527 6.527 6 N -0.721 5.721 7 C 0.124 3.876 8 C -0.124 4.124 9 C -0.102 4.102 10 C -0.148 4.148 11 C 0.168 3.832 12 N -0.713 5.713 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.129 4.129 22 C -0.130 4.130 23 C 0.098 3.902 24 H 0.076 0.924 25 C -0.151 4.151 26 C -0.157 4.157 27 C 0.045 3.955 28 O -0.360 6.360 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 4.966 31.064 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.122 0.878 4 C 0.303 3.697 5 O -0.402 6.402 6 N -0.371 5.371 7 C 0.020 3.980 8 C -0.163 4.163 9 C -0.103 4.103 10 C -0.189 4.189 11 C 0.056 3.944 12 N -0.351 5.351 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.168 4.168 22 C -0.168 4.168 23 C 0.040 3.960 24 H 0.094 0.906 25 C -0.188 4.188 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.279 6.279 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.960 4.338 30.834 32.139 hybrid contribution 0.001 0.614 -0.646 0.891 sum -7.959 4.952 30.188 31.610 Atomic orbital electron populations 1.21766 0.91900 1.03227 1.03201 1.21387 0.97458 1.01371 0.92654 0.87804 1.20445 0.80113 0.84687 0.84504 1.90732 1.36785 1.26129 1.86563 1.46072 1.53691 1.31778 1.05599 1.22600 0.95552 0.97850 0.82028 1.23133 0.98565 1.00277 0.94309 1.22073 0.95304 1.00003 0.92904 1.23632 1.02140 0.98301 0.94874 1.21538 0.95631 0.92530 0.84664 1.42411 1.34503 1.57577 1.00640 1.19275 1.06489 1.23309 0.88240 0.91180 1.24757 0.98809 1.00337 0.97117 1.69653 1.33505 1.40254 1.14776 0.86265 0.80787 0.78506 0.80614 1.21261 1.21717 1.21292 1.23208 1.00155 0.96080 0.97337 1.23168 0.96977 1.02037 0.94638 1.22848 0.81771 0.98779 0.92633 0.90604 1.23214 0.99326 1.01571 0.94739 1.22944 0.95808 1.02063 0.98635 1.23136 0.97546 1.00651 0.81878 1.88994 1.21027 1.92665 1.25211 0.91342 0.91704 0.91072 0.76832 0.86969 0.89942 0.91015 0.90341 0.92765 0.90825 0.78134 0.93479 0.92092 0.90068 0.90941 0.89962 0.90005 0.90283 0.90676 0.90475 0.89980 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.86 37.16 0.33 -0.40 16 2 C -0.11 -0.86 2.53 -91.77 -0.23 -1.09 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.52 6.04 7.06 -10.99 -0.08 5.96 16 5 O -0.53 -8.56 15.15 -6.48 -0.10 -8.66 16 6 N -0.72 -7.21 5.25 -52.85 -0.28 -7.49 16 7 C 0.12 1.50 4.24 -66.95 -0.28 1.22 16 8 C -0.12 -1.63 7.64 -26.28 -0.20 -1.83 16 9 C -0.10 -1.46 1.11 -154.72 -0.17 -1.63 16 10 C -0.15 -2.57 7.64 -26.29 -0.20 -2.77 16 11 C 0.17 3.40 4.48 -66.95 -0.30 3.11 16 12 N -0.71 -18.18 5.40 -52.47 -0.28 -18.46 16 13 C -0.24 -6.81 9.97 -15.06 -0.15 -6.96 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 17 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C -0.13 -2.19 7.59 -26.28 -0.20 -2.39 16 22 C -0.13 -1.53 7.59 -26.29 -0.20 -1.73 16 23 C 0.10 0.87 2.30 -25.68 -0.06 0.81 16 24 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 25 C -0.15 -0.86 5.46 -24.73 -0.13 -0.99 16 26 C -0.16 -0.88 7.01 -25.20 -0.18 -1.06 16 27 C 0.05 0.37 7.70 37.74 0.29 0.66 16 28 O -0.36 -4.25 10.59 -47.26 -0.50 -4.75 16 29 H 0.07 0.28 7.56 -51.93 -0.39 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.25 7.20 -51.93 -0.37 -0.13 16 32 H 0.40 2.83 8.14 -40.82 -0.33 2.50 16 33 H 0.11 1.59 7.46 -51.93 -0.39 1.20 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 39 H 0.38 10.36 7.92 -40.82 -0.32 10.03 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.85 8.12 -51.93 -0.42 0.42 16 45 H 0.08 0.34 8.04 -51.93 -0.42 -0.08 16 46 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -34.01 397.64 -10.28 -44.28 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.95 Total: 8.80 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.86 Total: -9.60 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.16 Total: -53.66 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.60 Total: -13.40 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.01 -10.28 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964987708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.902 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds