Wall clock time and date at job start Tue Mar 31 2020 13:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.50692 * 109.47004 * 240.00046 * 2 1 3 5 5 O 1.21286 * 120.00379 * 240.00148 * 4 2 1 6 6 N 1.34777 * 120.00417 * 59.99757 * 4 2 1 7 7 C 1.46502 * 120.00393 * 180.02562 * 6 4 2 8 8 C 1.53956 * 113.57818 * 252.72151 * 7 6 4 9 9 C 1.52912 * 86.77920 * 220.66305 * 8 7 6 10 10 C 1.52902 * 121.13500 * 150.62358 * 9 8 7 11 11 C 1.53952 * 86.78610 * 100.81853 * 10 9 8 12 12 N 1.46497 * 113.65282 * 139.34549 * 11 10 9 13 13 C 1.36943 * 119.99749 * 107.24438 * 12 11 10 14 14 H 1.08001 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00149 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99865 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47278 * 59.99561 * 17 15 13 19 19 H 1.48499 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47062 * 299.99741 * 17 15 13 21 21 C 1.52909 * 121.13442 * 259.18124 * 9 8 7 22 22 C 1.52906 * 88.04227 * 24.89946 * 9 8 7 23 23 C 1.53002 * 109.47000 * 119.99932 * 2 1 3 24 24 H 1.08993 * 110.55151 * 62.87996 * 23 2 1 25 25 C 1.54991 * 110.61707 * 299.99786 * 23 2 1 26 26 C 1.54810 * 102.09350 * 204.31975 * 25 23 2 27 27 C 1.54106 * 104.18526 * 20.88072 * 26 25 23 28 28 O 1.43745 * 107.29161 * 2.03378 * 27 26 25 29 29 H 1.08994 * 109.47196 * 59.99704 * 1 2 3 30 30 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47098 * 300.00208 * 1 2 3 32 32 H 0.97004 * 119.99661 * 0.02562 * 6 4 2 33 33 H 1.08995 * 112.82077 * 23.90812 * 7 6 4 34 34 H 1.08996 * 113.66120 * 335.13501 * 8 7 6 35 35 H 1.08994 * 113.66188 * 106.19097 * 8 7 6 36 36 H 1.09007 * 113.66424 * 215.28589 * 10 9 8 37 37 H 1.09006 * 113.66623 * 346.34466 * 10 9 8 38 38 H 1.09001 * 113.57582 * 270.13360 * 11 10 9 39 39 H 0.96998 * 119.99864 * 287.24524 * 12 11 10 40 40 H 0.97001 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.09000 * 113.66220 * 13.65250 * 21 9 8 42 42 H 1.08996 * 113.66228 * 144.61460 * 21 9 8 43 43 H 1.08997 * 113.66364 * 220.62701 * 22 9 8 44 44 H 1.08999 * 113.66093 * 89.57298 * 22 9 8 45 45 H 1.09005 * 110.90880 * 86.12205 * 25 23 2 46 46 H 1.09001 * 110.94109 * 322.52741 * 25 23 2 47 47 H 1.09000 * 110.49118 * 262.21058 * 26 25 23 48 48 H 1.08999 * 110.49045 * 139.55798 * 26 25 23 49 49 H 1.09004 * 109.87542 * 121.45649 * 27 26 25 50 50 H 1.09000 * 109.87721 * 242.60820 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 2.1946 -0.9409 -3.6507 8 6 3.3025 -0.1745 -4.3958 9 6 2.6088 -0.6019 -5.6897 10 6 2.6851 0.2606 -6.9499 11 6 3.7675 -0.7147 -7.4472 12 7 3.6551 -1.0414 -8.8708 13 6 4.5565 -0.5274 -9.7645 14 1 5.3505 0.1184 -9.4196 15 6 4.4503 -0.8373 -11.1133 16 7 3.4829 -1.6248 -11.5335 17 14 5.6802 -0.1368 -12.3323 18 1 7.0483 -0.5847 -11.9678 19 1 5.3499 -0.6148 -13.6989 20 1 5.6199 1.3467 -12.2992 21 6 3.1375 -1.7711 -6.5213 22 6 1.3101 -0.7228 -4.8917 23 6 2.0400 -0.7213 1.2493 24 1 1.7289 -1.7658 1.2418 25 6 1.5381 -0.0114 2.5324 26 6 2.6014 -0.4354 3.5746 27 6 3.8199 -0.8462 2.7253 28 8 3.4768 -0.6193 1.3480 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1493 0.5389 -2.5435 33 1 2.4356 -1.9876 -3.4656 34 1 3.2820 0.9016 -4.2233 35 1 4.2950 -0.6065 -4.2683 36 1 1.7735 0.2440 -7.5474 37 1 3.0556 1.2695 -6.7679 38 1 4.7786 -0.4285 -7.1575 39 1 2.9422 -1.6217 -9.1804 40 1 3.4090 -1.8417 -12.4761 41 1 3.8694 -2.3854 -5.9967 42 1 2.3530 -2.3597 -6.9968 43 1 0.7109 -1.5928 -5.1603 44 1 0.7296 0.1992 -4.8586 45 1 0.5497 -0.3732 2.8158 46 1 1.5315 1.0708 2.4017 47 1 2.2437 -1.2807 4.1624 48 1 2.8542 0.4025 4.2243 49 1 4.6830 -0.2385 2.9973 50 1 4.0426 -1.9015 2.8829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964987708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:00 Heat of formation + Delta-G solvation = -61.553891 kcal Electronic energy + Delta-G solvation = -27137.154501 eV Core-core repulsion = 23357.516736 eV Total energy + Delta-G solvation = -3779.637765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74678 -40.90320 -39.66988 -37.21739 -35.34270 -34.98992 -33.37579 -32.76489 -31.35518 -28.87435 -26.76484 -26.68709 -26.22425 -25.71639 -24.03816 -22.78344 -21.96156 -21.45019 -20.91347 -19.44519 -18.64639 -18.25641 -17.51315 -17.14995 -16.90312 -16.56948 -16.44682 -16.07156 -15.88382 -15.52257 -15.27259 -15.11498 -14.45444 -14.29015 -14.04764 -13.65573 -13.61839 -13.46179 -13.30239 -13.08658 -12.98435 -12.95631 -12.80065 -12.62460 -12.51748 -12.32733 -12.27825 -12.11925 -12.06590 -11.93007 -11.86685 -11.49983 -11.36436 -11.05851 -10.86366 -10.80479 -10.59078 -10.54140 -9.94682 -8.97039 -7.94321 -5.22511 1.46710 1.49884 1.55995 1.69704 2.23282 2.56644 2.90398 3.36549 3.50794 3.53713 3.59104 3.64294 3.72667 3.85510 3.87858 4.00272 4.01634 4.11313 4.20871 4.28008 4.33857 4.36788 4.46343 4.47674 4.60995 4.62497 4.79837 4.81579 4.82932 4.86094 4.89214 4.93383 4.95251 4.99790 5.01774 5.05916 5.08877 5.13265 5.15474 5.24782 5.27801 5.31437 5.44467 5.56974 5.66446 5.70427 6.04158 6.27992 6.64369 7.33550 7.34990 8.11302 8.34733 9.28773 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.034697 B = 0.001912 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.798609 B =14641.666724 C =15035.335779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.120 0.880 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.706 5.706 7 C 0.130 3.870 8 C -0.121 4.121 9 C -0.090 4.090 10 C -0.136 4.136 11 C 0.146 3.854 12 N -0.728 5.728 13 C -0.245 4.245 14 H 0.074 0.926 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.974 3.026 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.277 1.277 21 C -0.124 4.124 22 C -0.114 4.114 23 C 0.088 3.912 24 H 0.054 0.946 25 C -0.141 4.141 26 C -0.152 4.152 27 C 0.034 3.966 28 O -0.399 6.399 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.416 0.584 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 7.279 33.144 35.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.137 0.863 4 C 0.298 3.702 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.025 3.975 8 C -0.160 4.160 9 C -0.091 4.091 10 C -0.176 4.176 11 C 0.037 3.963 12 N -0.366 5.366 13 C -0.377 4.377 14 H 0.092 0.908 15 C -0.270 4.270 16 N -0.620 5.620 17 Si 0.803 3.197 18 H -0.206 1.206 19 H -0.221 1.221 20 H -0.203 1.203 21 C -0.163 4.163 22 C -0.152 4.152 23 C 0.030 3.970 24 H 0.072 0.928 25 C -0.178 4.178 26 C -0.189 4.189 27 C -0.043 4.043 28 O -0.318 6.318 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.319 6.705 32.971 34.912 hybrid contribution 0.477 -0.138 -1.219 1.316 sum -8.842 6.567 31.751 33.607 Atomic orbital electron populations 1.21804 0.89294 1.03295 1.05208 1.21448 0.99386 1.01172 0.90087 0.86254 1.21210 0.79117 0.84079 0.85791 1.90713 1.39278 1.28663 1.87344 1.45909 1.53313 1.31981 1.04565 1.22284 0.95421 0.96773 0.83070 1.23168 0.98072 1.01360 0.93359 1.21888 0.97746 0.97125 0.92352 1.23383 1.00137 0.98333 0.95789 1.21908 0.96521 0.95291 0.82616 1.42585 1.33884 1.57685 1.02458 1.19669 1.06548 1.22514 0.88988 0.90761 1.25579 1.00963 1.01429 0.98990 1.69813 1.35477 1.42091 1.14662 0.85208 0.78602 0.78067 0.77869 1.20565 1.22112 1.20308 1.23085 0.99887 0.96293 0.97010 1.23126 0.95760 1.03528 0.92774 1.23001 0.80838 0.98339 0.94815 0.92798 1.23208 1.00057 1.01989 0.92580 1.22949 0.94511 1.03021 0.98454 1.23314 0.99224 1.00456 0.81266 1.88952 1.22920 1.92768 1.27208 0.89786 0.92603 0.88652 0.74660 0.89311 0.88144 0.92460 0.91323 0.91875 0.91520 0.79456 0.94044 0.91999 0.90583 0.90664 0.87234 0.87977 0.88958 0.89787 0.88845 0.89379 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.86 71.98 0.64 -0.32 16 2 C -0.10 -1.39 2.53 -11.54 -0.03 -1.42 16 3 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.51 11.47 7.06 87.65 0.62 12.09 16 5 O -0.58 -19.40 15.15 8.46 0.13 -19.27 16 6 N -0.71 -12.63 5.25 -439.52 -2.31 -14.94 16 7 C 0.13 2.96 4.24 45.63 0.19 3.16 16 8 C -0.12 -2.99 7.64 30.89 0.24 -2.75 16 9 C -0.09 -2.47 1.11 -52.32 -0.06 -2.52 16 10 C -0.14 -4.55 7.64 30.88 0.24 -4.32 16 11 C 0.15 5.96 4.48 45.63 0.20 6.17 16 12 N -0.73 -37.89 5.40 -319.93 -1.73 -39.62 16 13 C -0.25 -13.98 9.97 84.03 0.84 -13.14 16 14 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 16 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 17 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 C -0.12 -4.23 7.59 30.89 0.23 -3.99 16 22 C -0.11 -2.39 7.59 30.88 0.23 -2.16 16 23 C 0.09 1.49 2.30 31.28 0.07 1.57 16 24 H 0.05 1.11 8.05 -2.39 -0.02 1.09 16 25 C -0.14 -1.23 5.46 31.89 0.17 -1.05 16 26 C -0.15 -1.41 7.01 31.59 0.22 -1.19 16 27 C 0.03 0.55 7.70 72.36 0.56 1.11 16 28 O -0.40 -9.48 10.59 -137.48 -1.46 -10.94 16 29 H 0.08 0.34 7.56 -2.39 -0.02 0.32 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.24 7.20 -2.38 -0.02 0.23 16 32 H 0.42 4.42 8.14 -92.71 -0.76 3.66 16 33 H 0.09 2.52 7.46 -2.39 -0.02 2.50 16 34 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 39 H 0.37 20.74 7.92 -92.71 -0.73 20.01 16 40 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 2.67 8.12 -2.39 -0.02 2.66 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.11 1.78 8.12 -2.39 -0.02 1.76 16 45 H 0.10 0.49 8.04 -2.38 -0.02 0.47 16 46 H 0.09 0.58 8.06 -2.39 -0.02 0.57 16 47 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -76.74 397.64 1.22 -75.52 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.56 Total: 33.18 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.84 Total: -12.86 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.75 Total: -114.59 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.33 Total: -30.21 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -76.74 1.22 -75.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964987708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.968 kcal (2) G-P(sol) polarization free energy of solvation -76.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds