Wall clock time and date at job start Tue Mar 31 2020 13:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46927 * 2 1 4 4 C 1.42897 * 113.99419 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.61000 * 209.99511 * 4 3 2 6 6 C 1.53785 * 87.08065 * 220.01991 * 5 4 3 7 7 C 1.53005 * 113.61244 * 139.98363 * 6 5 4 8 8 C 1.50702 * 109.47069 * 175.00388 * 7 6 5 9 9 O 1.21287 * 119.99704 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.47393 * 125.58944 * 359.97364 * 10 8 7 12 12 C 1.54855 * 104.81026 * 204.62750 * 11 10 8 13 13 C 1.55125 * 101.77742 * 322.81158 * 12 11 10 14 14 H 1.08998 * 113.46461 * 158.34414 * 13 12 11 15 15 C 1.54209 * 108.10596 * 286.23146 * 13 12 11 16 16 N 1.46704 * 106.74032 * 136.03360 * 15 13 12 17 17 C 1.36945 * 125.32079 * 161.74300 * 16 15 13 18 18 H 1.08000 * 119.99441 * 359.72391 * 17 16 15 19 19 C 1.38811 * 120.00031 * 179.72249 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46677 * 60.00366 * 21 19 17 23 23 H 1.48501 * 109.47050 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47416 * 300.00359 * 21 19 17 25 25 C 1.46633 * 109.36189 * 341.48662 * 16 15 13 26 26 C 1.46730 * 125.58728 * 179.97438 * 10 8 7 27 27 H 1.09007 * 111.83989 * 55.79254 * 26 10 8 28 28 C 1.53782 * 113.61258 * 112.50203 * 4 3 2 29 29 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46975 * 299.99939 * 1 2 3 31 31 H 1.09003 * 109.47355 * 60.00197 * 1 2 3 32 32 H 1.08997 * 109.46907 * 239.99787 * 2 1 3 33 33 H 1.08997 * 109.46959 * 119.99979 * 2 1 3 34 34 H 1.08998 * 112.90955 * 341.24924 * 4 3 2 35 35 H 1.09003 * 113.61073 * 105.47690 * 5 4 3 36 36 H 1.08997 * 113.69553 * 334.57899 * 5 4 3 37 37 H 1.09005 * 113.61703 * 270.80176 * 6 5 4 38 38 H 1.08995 * 109.47405 * 55.00072 * 7 6 5 39 39 H 1.08999 * 109.46863 * 294.99671 * 7 6 5 40 40 H 1.09003 * 110.37548 * 85.79764 * 11 10 8 41 41 H 1.08994 * 110.37299 * 323.45714 * 11 10 8 42 42 H 1.09002 * 110.97023 * 204.68867 * 12 11 10 43 43 H 1.09000 * 110.99666 * 80.94373 * 12 11 10 44 44 H 1.08999 * 110.12670 * 16.67462 * 15 13 12 45 45 H 1.08993 * 109.93912 * 255.30288 * 15 13 12 46 46 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.76308 * 121.13987 * 25 16 15 48 48 H 1.09000 * 109.75474 * 241.85314 * 25 16 15 49 49 H 1.08996 * 113.61810 * 25.42927 * 28 4 3 50 50 H 1.09003 * 113.61548 * 254.52229 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.9489 2.7251 0.7038 6 6 4.9896 2.8314 -0.4233 7 6 5.2308 4.2645 -0.9017 8 6 6.3477 4.2752 -1.9134 9 8 6.8970 3.2386 -2.2211 10 7 6.7367 5.4367 -2.4754 11 6 6.1580 6.7625 -2.1930 12 6 6.4536 7.6017 -3.4605 13 6 7.8641 7.0913 -3.8562 14 1 8.1102 7.2645 -4.9038 15 6 8.8834 7.6786 -2.8591 16 7 9.7929 6.5874 -2.4926 17 6 11.0289 6.7441 -1.9241 18 1 11.4055 7.7345 -1.7154 19 6 11.7974 5.6300 -1.6162 20 7 11.3386 4.4230 -1.8711 21 14 13.4837 5.8437 -0.8414 22 1 13.3460 6.5542 0.4554 23 1 14.0963 4.5103 -0.6134 24 1 14.3494 6.6367 -1.7508 25 6 9.1691 5.3025 -2.8245 26 6 7.8059 5.5887 -3.4688 27 1 7.6401 4.9585 -4.3426 28 6 4.0018 2.0464 -1.3025 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9290 0.5457 0.3218 35 1 4.3850 2.5315 1.6839 36 1 3.2314 3.5455 0.7144 37 1 5.9145 2.2931 -0.2159 38 1 5.5042 4.8901 -0.0520 39 1 4.3213 4.6522 -1.3606 40 1 6.6384 7.2086 -1.3221 41 1 5.0828 6.6812 -2.0342 42 1 6.4752 8.6662 -3.2273 43 1 5.7281 7.3912 -4.2462 44 1 8.3696 8.0492 -1.9721 45 1 9.4420 8.4867 -3.3313 46 1 11.8758 3.6444 -1.6563 47 1 9.8006 4.7564 -3.5252 48 1 9.0315 4.7146 -1.9170 49 1 3.2979 2.6805 -1.8414 50 1 4.4806 1.3050 -1.9422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076161981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:04 Heat of formation + Delta-G solvation = -31.607157 kcal Electronic energy + Delta-G solvation = -28174.441415 eV Core-core repulsion = 24396.102238 eV Total energy + Delta-G solvation = -3778.339177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28790 -39.49421 -37.77095 -36.39404 -34.72563 -32.19675 -31.42414 -30.81797 -29.92733 -28.40395 -26.25066 -25.73881 -24.66962 -23.55828 -22.95297 -22.09857 -20.61638 -19.72023 -19.37319 -18.40800 -17.00202 -16.96159 -16.52705 -15.87975 -15.64333 -15.53464 -15.12998 -14.62359 -14.27636 -13.94009 -13.76906 -13.49692 -13.12978 -12.97751 -12.82965 -12.65986 -12.46967 -12.29771 -12.28451 -11.95593 -11.81113 -11.50900 -11.43183 -11.36323 -11.07191 -10.98166 -10.82737 -10.70489 -10.67945 -10.44025 -10.32112 -10.19964 -10.11575 -9.82358 -9.65211 -9.52079 -9.23385 -8.54136 -8.07519 -6.76558 -5.63114 -2.99298 3.14644 3.39985 3.43396 3.47109 3.49526 3.57812 4.44927 4.52876 4.54265 4.69554 4.74432 4.81993 4.83300 4.87500 4.97050 5.11689 5.13214 5.15448 5.24083 5.41340 5.48954 5.53670 5.55428 5.62941 5.65298 5.68564 5.71870 5.74750 5.75083 5.78602 5.82228 5.85326 5.90603 6.03805 6.05421 6.17185 6.26586 6.38787 6.42988 6.54251 6.62178 6.68510 6.91931 7.14114 7.61119 7.71597 7.94655 8.08577 8.34412 8.71084 9.28192 9.89303 10.53090 11.46404 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.002855 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.434282 B = 9806.168354 C =10956.706655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.061 3.939 5 C -0.132 4.132 6 C -0.092 4.092 7 C -0.122 4.122 8 C 0.526 3.474 9 O -0.531 6.531 10 N -0.606 5.606 11 C 0.102 3.898 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.097 0.903 15 C 0.143 3.857 16 N -0.603 5.603 17 C -0.234 4.234 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.177 3.823 26 C 0.113 3.887 27 H 0.076 0.924 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.034 0.966 46 H 0.253 0.747 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.828 -1.603 1.587 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.169 4.169 6 C -0.110 4.110 7 C -0.162 4.162 8 C 0.314 3.686 9 O -0.408 6.408 10 N -0.340 5.340 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.130 4.130 14 H 0.115 0.885 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.362 4.362 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.051 3.949 26 C 0.010 3.990 27 H 0.094 0.906 28 C -0.183 4.183 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.501 -2.249 1.539 20.682 hybrid contribution 1.127 -0.077 0.438 1.211 sum -19.374 -2.326 1.977 19.613 Atomic orbital electron populations 1.21748 0.93986 1.02091 1.03031 1.22487 0.95425 0.84305 0.99972 1.87936 1.21041 1.25997 1.94663 1.23701 0.80542 0.97983 0.97435 1.23308 0.97739 0.97738 0.98153 1.22083 0.97955 0.95003 0.96007 1.21584 0.97737 0.98321 0.98536 1.20165 0.84181 0.82332 0.81929 1.90719 1.56351 1.31341 1.62341 1.48429 1.36324 1.06362 1.42909 1.22291 0.97673 0.83656 0.98555 1.22754 0.96977 0.99624 0.96933 1.23180 0.94984 0.94649 1.00225 0.88519 1.21310 0.90843 0.92111 0.94034 1.44226 1.15851 1.00226 1.72645 1.18958 0.90967 0.92824 1.33477 0.90541 1.24845 0.98750 0.95337 1.01427 1.69991 1.37017 0.96803 1.52367 0.86220 0.83937 0.76591 0.79093 1.21240 1.21624 1.21175 1.21224 0.86825 0.87877 0.98924 1.22582 0.89795 0.95692 0.90976 0.90556 1.23517 0.97751 1.00163 0.96837 0.91288 0.91955 0.91893 0.93421 0.93530 0.89594 0.90922 0.89167 0.87720 0.88970 0.89323 0.91170 0.91310 0.90044 0.91161 0.96427 0.94830 0.93644 0.93167 0.92829 0.89589 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.48 6.50 37.16 0.24 0.72 16 3 O -0.38 -4.26 10.35 -35.23 -0.36 -4.63 16 4 C 0.06 0.67 4.31 -25.92 -0.11 0.55 16 5 C -0.13 -1.39 7.47 -25.91 -0.19 -1.59 16 6 C -0.09 -1.17 3.15 -89.80 -0.28 -1.46 16 7 C -0.12 -1.60 4.53 -27.88 -0.13 -1.73 16 8 C 0.53 9.53 7.40 -10.99 -0.08 9.45 16 9 O -0.53 -11.85 15.63 5.55 0.09 -11.77 16 10 N -0.61 -10.67 2.98 -162.43 -0.48 -11.15 16 11 C 0.10 1.37 6.22 -2.58 -0.02 1.36 16 12 C -0.12 -1.55 6.35 -24.63 -0.16 -1.70 16 13 C -0.11 -1.84 4.35 -87.65 -0.38 -2.22 16 14 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.14 2.90 6.44 -3.30 -0.02 2.87 16 16 N -0.60 -15.68 3.38 -171.93 -0.58 -16.26 16 17 C -0.23 -6.65 10.25 -15.06 -0.15 -6.81 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 20 N -0.92 -28.15 10.24 55.49 0.57 -27.58 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.18 4.56 4.91 -3.72 -0.02 4.54 16 26 C 0.11 2.25 3.59 -66.35 -0.24 2.02 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 28 C -0.14 -1.76 7.46 -25.92 -0.19 -1.95 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.91 8.10 -51.93 -0.42 0.48 16 37 H 0.10 1.57 7.67 -51.93 -0.40 1.17 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.96 7.54 -51.93 -0.39 0.57 16 40 H 0.07 1.01 7.16 -51.93 -0.37 0.64 16 41 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 42 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.36 6.51 -51.93 -0.34 0.02 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 47 H 0.05 1.46 7.33 -51.93 -0.38 1.08 16 48 H 0.05 1.59 6.66 -51.93 -0.35 1.25 16 49 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -34.40 388.28 -10.29 -44.68 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.89 Total: 0.15 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.45 Total: 3.07 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.50 Total: -54.99 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.28 Total: -16.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.40 -10.29 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076161981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.076 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds