Wall clock time and date at job start Tue Mar 31 2020 13:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42904 * 109.47498 * 2 1 4 4 C 1.42895 * 114.00630 * 180.02562 * 3 2 1 5 5 C 1.53882 * 113.59069 * 149.99959 * 4 3 2 6 6 C 1.53252 * 86.88277 * 89.60963 * 5 4 3 7 7 C 1.52462 * 128.58458 * 245.05538 * 6 5 4 8 8 C 1.52462 * 128.58564 * 165.11007 * 6 5 4 9 9 H 1.08998 * 117.51519 * 10.11450 * 8 6 5 10 10 C 1.50705 * 117.51297 * 225.04943 * 8 6 5 11 11 O 1.21280 * 120.00002 * 0.02562 * 10 8 6 12 12 N 1.34780 * 119.99463 * 179.97438 * 10 8 6 13 13 C 1.46502 * 119.99198 * 180.02562 * 12 10 8 14 14 C 1.53008 * 109.46918 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84529 * 316.19489 * 14 13 12 16 16 C 1.53777 * 113.61461 * 87.49755 * 14 13 12 17 17 C 1.53782 * 87.07853 * 139.98443 * 16 14 13 18 18 H 1.08998 * 113.69599 * 89.13024 * 17 16 14 19 19 N 1.46506 * 113.61543 * 220.02226 * 17 16 14 20 20 C 1.36938 * 119.99589 * 252.49850 * 19 17 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99817 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47274 * 89.99913 * 24 22 20 26 26 H 1.48505 * 109.47015 * 209.99478 * 24 22 20 27 27 H 1.48498 * 109.47362 * 329.99904 * 24 22 20 28 28 C 1.53778 * 113.61594 * 185.00088 * 14 13 12 29 29 C 1.53258 * 87.69159 * 25.08342 * 6 5 4 30 30 H 1.09004 * 109.47337 * 299.99737 * 1 2 3 31 31 H 1.09003 * 109.47571 * 59.99274 * 1 2 3 32 32 H 1.08998 * 109.47430 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47337 * 240.00263 * 2 1 3 34 34 H 1.08997 * 109.47711 * 120.00305 * 2 1 3 35 35 H 1.09005 * 112.82666 * 18.88660 * 4 3 2 36 36 H 1.08999 * 113.65121 * 335.10970 * 5 4 3 37 37 H 1.09001 * 113.72731 * 204.12197 * 5 4 3 38 38 H 1.09004 * 117.51023 * 134.95494 * 7 6 5 39 39 H 1.08992 * 117.51359 * 349.84470 * 7 6 5 40 40 H 0.96993 * 120.00572 * 359.97438 * 12 10 8 41 41 H 1.09001 * 109.47656 * 60.00457 * 13 12 10 42 42 H 1.09000 * 109.47151 * 299.99384 * 13 12 10 43 43 H 1.09000 * 113.61314 * 25.44097 * 16 14 13 44 44 H 1.09002 * 113.61704 * 254.53161 * 16 14 13 45 45 H 0.96999 * 120.00080 * 72.49340 * 19 17 16 46 46 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 47 47 H 1.08997 * 113.61430 * 105.46828 * 28 14 13 48 48 H 1.08998 * 113.68980 * 334.57552 * 28 14 13 49 49 H 1.09003 * 113.64483 * 89.41732 * 29 6 5 50 50 H 1.09000 * 113.64205 * 220.41751 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9480 2.7264 -0.7057 6 6 3.8503 3.4232 0.6557 7 6 2.9405 4.5736 1.0720 8 6 4.4614 4.7506 1.0906 9 1 4.9053 5.3778 0.3176 10 6 5.1404 4.7971 2.4352 11 8 5.1859 3.8015 3.1263 12 7 5.6981 5.9449 2.8690 13 6 6.3587 5.9899 4.1759 14 6 6.9017 7.3985 4.4245 15 1 7.3982 7.8210 3.5509 16 6 5.8800 8.3470 5.0735 17 6 7.0401 8.8855 5.9273 18 1 7.5746 9.7161 5.4662 19 7 6.6703 9.1502 7.3200 20 6 6.5434 10.4403 7.7612 21 1 6.7163 11.2626 7.0828 22 6 6.1935 10.6912 9.0809 23 7 5.9783 9.6890 9.9066 24 14 6.0210 12.4510 9.6832 25 1 4.6216 12.9068 9.4858 26 1 6.3639 12.5160 11.1266 27 1 6.9405 13.3291 8.9159 28 6 7.7219 7.5229 5.7194 29 6 4.0030 2.0428 1.3037 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9274 0.5460 -0.3261 36 1 3.2591 3.1242 -1.4509 37 1 4.9684 2.6353 -1.0781 38 1 2.4315 4.4909 2.0323 39 1 2.3837 5.0847 0.2866 40 1 5.6627 6.7408 2.3158 41 1 7.1813 5.2749 4.1921 42 1 5.6403 5.7351 4.9551 43 1 5.1135 7.8326 5.6532 44 1 5.4675 9.0829 4.3833 45 1 6.5153 8.4117 7.9294 46 1 5.7335 9.8642 10.8287 47 1 8.7964 7.5935 5.5505 48 1 7.4601 6.7836 6.4763 49 1 5.0388 1.7601 1.4915 50 1 3.3581 1.8926 2.1695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086196847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:53 Heat of formation + Delta-G solvation = -6.585197 kcal Electronic energy + Delta-G solvation = -26364.959093 eV Core-core repulsion = 22587.704949 eV Total energy + Delta-G solvation = -3777.254144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65897 -39.31617 -38.40552 -37.02983 -34.59932 -33.57882 -33.21173 -30.96435 -30.26609 -27.64795 -26.04715 -25.08241 -24.36468 -23.39486 -23.21308 -22.85401 -21.01682 -20.33031 -19.08612 -18.74997 -17.30105 -17.01812 -16.92123 -16.16451 -15.90752 -15.53922 -15.16764 -14.91893 -14.65218 -14.38986 -14.09907 -14.01561 -13.56202 -13.35447 -13.15453 -12.92980 -12.75505 -12.61183 -12.23147 -12.02281 -11.89049 -11.80297 -11.65346 -11.48103 -11.37533 -11.22734 -10.83277 -10.74975 -10.52285 -10.34368 -10.22327 -10.12088 -10.05802 -9.81990 -9.80742 -9.63650 -9.43087 -8.97084 -8.86071 -6.95934 -5.78009 -3.06853 2.49021 3.10240 3.21850 3.42869 3.47886 3.49750 3.63553 4.13700 4.31001 4.45491 4.54350 4.58565 4.60151 4.72226 4.82169 4.89831 4.98282 4.99443 5.01442 5.05886 5.25413 5.26764 5.32864 5.42321 5.47166 5.50945 5.51442 5.53387 5.54133 5.74192 5.76568 5.83914 5.84954 5.87864 5.94399 5.95755 6.01593 6.09902 6.28037 6.33048 6.37552 6.49838 6.60774 6.84053 6.97055 7.12328 7.53940 7.69168 8.26113 8.40534 9.51527 10.10038 10.44250 11.44375 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.024363 B = 0.001762 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.027795 B =15883.532261 C =16356.688553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.364 6.364 4 C 0.063 3.937 5 C -0.100 4.100 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.182 4.182 9 H 0.122 0.878 10 C 0.540 3.460 11 O -0.539 6.539 12 N -0.722 5.722 13 C 0.133 3.867 14 C -0.127 4.127 15 H 0.088 0.912 16 C -0.160 4.160 17 C 0.165 3.835 18 H 0.075 0.925 19 N -0.713 5.713 20 C -0.245 4.245 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.143 4.143 29 C -0.100 4.100 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.400 0.600 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -17.495 -25.536 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.005 3.995 5 C -0.137 4.137 6 C -0.117 4.117 7 C -0.151 4.151 8 C -0.203 4.203 9 H 0.139 0.861 10 C 0.326 3.674 11 O -0.417 6.417 12 N -0.373 5.373 13 C 0.010 3.990 14 C -0.146 4.146 15 H 0.106 0.894 16 C -0.201 4.201 17 C 0.053 3.947 18 H 0.093 0.907 19 N -0.351 5.351 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.182 4.182 29 C -0.137 4.137 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.114 0.886 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.245 -17.845 -24.927 31.102 hybrid contribution 0.012 1.032 0.337 1.086 sum -5.233 -16.813 -24.590 30.244 Atomic orbital electron populations 1.21743 0.93720 1.02225 1.03206 1.22524 0.95586 0.83887 1.00014 1.87905 1.19671 1.26151 1.94592 1.22973 0.81714 0.97309 0.97499 1.22781 1.01469 0.94589 0.94851 1.22027 1.02836 0.89039 0.97792 1.22739 0.89773 0.99165 1.03385 1.22211 0.97688 1.03340 0.97027 0.86055 1.19635 0.78134 0.83069 0.86596 1.90687 1.58919 1.34529 1.57526 1.46006 1.57906 1.12576 1.20824 1.21426 0.96498 0.97208 0.83914 1.22634 0.99679 0.94085 0.98194 0.89423 1.23940 0.98648 0.98071 0.99465 1.21528 0.92983 0.93448 0.86723 0.90677 1.42415 1.81240 1.05747 1.05668 1.19311 1.39564 0.84608 0.94095 0.91092 1.24774 1.02431 0.97347 0.96397 1.69663 1.53794 1.29398 1.05144 0.86183 0.77751 0.84299 0.77911 1.21717 1.21762 1.20741 1.23445 0.98640 1.00545 0.95599 1.22864 1.01767 0.92121 0.96957 0.91736 0.91903 0.91141 0.93471 0.93293 0.90737 0.90309 0.88446 0.88042 0.87646 0.76612 0.91885 0.91330 0.90380 0.92792 0.78069 0.93455 0.92038 0.90131 0.88616 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.15 0.38 -0.53 16 2 C 0.06 0.40 6.50 37.15 0.24 0.64 16 3 O -0.36 -3.48 10.28 -35.23 -0.36 -3.84 16 4 C 0.06 0.53 4.37 -25.82 -0.11 0.42 16 5 C -0.10 -0.76 7.93 -26.14 -0.21 -0.96 16 6 C -0.12 -1.13 2.81 -154.80 -0.44 -1.56 16 7 C -0.11 -1.08 10.24 -26.94 -0.28 -1.35 16 8 C -0.18 -1.76 6.19 -91.98 -0.57 -2.33 16 9 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 10 C 0.54 6.92 7.61 -10.98 -0.08 6.84 16 11 O -0.54 -8.86 15.14 5.56 0.08 -8.77 16 12 N -0.72 -8.36 5.56 -60.29 -0.33 -8.70 16 13 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 14 C -0.13 -1.70 3.75 -89.81 -0.34 -2.04 16 15 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.16 -2.66 7.43 -25.92 -0.19 -2.86 16 17 C 0.17 3.21 4.48 -67.11 -0.30 2.91 16 18 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 19 N -0.71 -17.90 5.40 -52.63 -0.28 -18.18 16 20 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 24 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C -0.14 -2.29 7.39 -25.92 -0.19 -2.48 16 29 C -0.10 -1.03 6.30 -26.14 -0.16 -1.20 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.63 8.47 -40.82 -0.35 3.29 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 43 H 0.08 1.45 7.89 -51.93 -0.41 1.04 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.39 10.32 7.92 -40.82 -0.32 9.99 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 49 H 0.10 1.02 8.05 -51.93 -0.42 0.61 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -32.83 409.07 -10.59 -43.42 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -9.04 Total: 10.30 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.52 Total: -10.18 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.11 Total: -54.46 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.28 Total: -12.62 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.83 -10.59 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086196847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.836 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds