Wall clock time and date at job start Tue Mar 31 2020 13:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47169 * 2 1 4 4 C 1.42898 * 113.99827 * 179.97438 * 3 2 1 5 5 C 1.53891 * 113.58715 * 209.99368 * 4 3 2 6 6 C 1.53260 * 86.88202 * 220.43007 * 5 4 3 7 7 C 1.52459 * 128.58168 * 245.05382 * 6 5 4 8 8 C 1.52458 * 128.58083 * 165.11670 * 6 5 4 9 9 H 1.08997 * 117.54484 * 225.03180 * 8 6 5 10 10 C 1.50702 * 117.51414 * 10.14669 * 8 6 5 11 11 O 1.21283 * 120.00262 * 359.85906 * 10 8 6 12 12 N 1.34777 * 119.99928 * 179.57812 * 10 8 6 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84729 * 43.80692 * 14 13 12 16 16 C 1.53782 * 113.61653 * 174.99994 * 14 13 12 17 17 C 1.53780 * 87.07872 * 139.98291 * 16 14 13 18 18 H 1.09011 * 113.61353 * 89.11949 * 17 16 14 19 19 N 1.46499 * 113.61584 * 219.93121 * 17 16 14 20 20 C 1.36937 * 120.00319 * 204.99861 * 19 17 16 21 21 H 1.07998 * 120.00055 * 0.02562 * 20 19 17 22 22 C 1.38809 * 119.99599 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00402 * 0.02562 * 22 20 19 24 24 Si 1.86812 * 119.99633 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46676 * 60.00148 * 24 22 20 26 26 H 1.48502 * 109.46943 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47040 * 300.00183 * 24 22 20 28 28 C 1.53774 * 87.08411 * 334.56798 * 17 16 14 29 29 C 1.53249 * 87.69586 * 25.08588 * 6 5 4 30 30 H 1.09006 * 109.47187 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47274 * 300.00162 * 1 2 3 32 32 H 1.09001 * 109.46826 * 60.00526 * 1 2 3 33 33 H 1.08998 * 109.46847 * 239.99218 * 2 1 3 34 34 H 1.09001 * 109.46826 * 119.99473 * 2 1 3 35 35 H 1.08994 * 112.88864 * 341.16937 * 4 3 2 36 36 H 1.09005 * 113.64082 * 105.93169 * 5 4 3 37 37 H 1.08996 * 113.72583 * 334.94057 * 5 4 3 38 38 H 1.08999 * 117.51368 * 134.95349 * 7 6 5 39 39 H 1.08999 * 117.54995 * 349.83702 * 7 6 5 40 40 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 41 41 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 42 42 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 43 43 H 1.08997 * 113.61383 * 254.53330 * 16 14 13 44 44 H 1.08997 * 113.61199 * 25.35148 * 16 14 13 45 45 H 0.97008 * 119.99585 * 25.00786 * 19 17 16 46 46 H 0.97010 * 119.99536 * 179.97438 * 23 22 20 47 47 H 1.08998 * 113.61544 * 270.88323 * 28 17 16 48 48 H 1.09004 * 113.61702 * 139.97454 * 28 17 16 49 49 H 1.08993 * 113.64957 * 89.40937 * 29 6 5 50 50 H 1.09003 * 113.64662 * 220.42301 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.9480 2.7264 0.7056 6 6 4.9774 2.8340 -0.4247 7 6 6.4952 2.7157 -0.3429 8 6 5.8499 4.0248 -0.8059 9 1 5.9249 4.2765 -1.8637 10 6 5.8867 5.1935 0.1448 11 8 5.2352 5.1643 1.1674 12 7 6.6481 6.2689 -0.1385 13 6 6.6886 7.4026 0.7885 14 6 7.6201 8.4821 0.2338 15 1 7.4763 8.6582 -0.8322 16 6 7.6394 9.7701 1.0737 17 6 9.1562 9.8162 0.8247 18 1 9.4339 10.3571 -0.0801 19 7 9.9310 10.2321 1.9964 20 6 11.1634 10.8065 1.8337 21 1 11.5640 10.9534 0.8416 22 6 11.8976 11.2000 2.9441 23 7 11.4096 11.0205 4.1532 24 14 13.5785 11.9844 2.7222 25 1 13.4425 13.2284 1.9227 26 1 14.1520 12.3106 4.0526 27 1 14.4772 11.0371 2.0150 28 6 9.0922 8.2915 0.6356 29 6 4.0030 2.0427 -1.3039 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9283 0.5461 0.3250 36 1 4.3904 2.5328 1.6829 37 1 3.2283 3.5448 0.7209 38 1 6.9941 2.1062 -1.0963 39 1 6.9469 2.7003 0.6490 40 1 7.1691 6.2924 -0.9564 41 1 5.6856 7.8131 0.9045 42 1 7.0578 7.0664 1.7575 43 1 7.0966 10.5975 0.6168 44 1 7.3718 9.6139 2.1187 45 1 9.5711 10.1003 2.8875 46 1 11.9230 11.2953 4.9291 47 1 9.2231 7.7308 1.5611 48 1 9.7220 7.9251 -0.1751 49 1 3.2976 2.6700 -1.8487 50 1 4.4894 1.3011 -1.9375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086196848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:55 Heat of formation + Delta-G solvation = -9.321190 kcal Electronic energy + Delta-G solvation = -26197.652174 eV Core-core repulsion = 22420.279389 eV Total energy + Delta-G solvation = -3777.372785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67680 -39.30099 -38.41813 -37.19150 -34.61820 -33.61080 -33.22138 -31.00792 -30.26984 -27.65860 -26.06601 -25.08845 -24.39300 -23.42559 -23.29399 -22.77850 -21.02580 -20.36529 -19.08752 -18.65904 -17.40377 -17.17628 -16.98757 -16.12368 -15.90847 -15.62672 -15.21554 -14.94872 -14.66246 -14.42074 -14.20638 -13.82480 -13.56317 -13.23962 -13.17977 -12.95448 -12.84017 -12.54792 -12.32716 -12.13426 -11.88946 -11.80396 -11.67642 -11.42659 -11.38402 -11.22988 -10.87822 -10.82298 -10.61307 -10.52960 -10.22913 -10.16019 -10.11706 -9.82249 -9.76372 -9.67321 -9.44857 -8.98826 -8.86233 -6.96407 -5.78168 -3.07122 2.43211 3.03688 3.32193 3.43056 3.47442 3.48671 3.56977 4.06624 4.29318 4.38822 4.51810 4.52835 4.58281 4.67502 4.72430 4.84962 4.93136 4.98366 4.98593 5.03669 5.23767 5.24339 5.27493 5.36201 5.41893 5.46867 5.51718 5.52082 5.53946 5.65614 5.71536 5.81069 5.83692 5.86672 5.94669 5.96068 5.99702 6.09562 6.27193 6.32525 6.36899 6.48223 6.59932 6.83502 6.97179 7.11683 7.51212 7.68353 8.23227 8.40331 9.51291 10.09755 10.43977 11.44100 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.034479 B = 0.001646 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.896643 B =17008.542345 C =17069.277874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.062 3.938 5 C -0.076 4.076 6 C -0.129 4.129 7 C -0.121 4.121 8 C -0.171 4.171 9 H 0.123 0.877 10 C 0.538 3.462 11 O -0.537 6.537 12 N -0.722 5.722 13 C 0.133 3.867 14 C -0.127 4.127 15 H 0.088 0.912 16 C -0.142 4.142 17 C 0.166 3.834 18 H 0.075 0.925 19 N -0.713 5.713 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.160 4.160 29 C -0.112 4.112 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.400 0.600 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.095 0.905 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 -22.473 -13.584 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.004 3.996 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.158 4.158 8 C -0.192 4.192 9 H 0.141 0.859 10 C 0.324 3.676 11 O -0.414 6.414 12 N -0.372 5.372 13 C 0.009 3.991 14 C -0.146 4.146 15 H 0.106 0.894 16 C -0.182 4.182 17 C 0.053 3.947 18 H 0.093 0.907 19 N -0.351 5.351 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.201 4.201 29 C -0.149 4.149 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.234 0.766 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.113 0.887 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.141 -22.200 -12.839 31.413 hybrid contribution 1.366 0.231 -0.307 1.419 sum -16.775 -21.970 -13.146 30.608 Atomic orbital electron populations 1.21753 0.93842 1.02164 1.03207 1.22503 0.95606 0.84128 0.99896 1.87974 1.20661 1.26095 1.94570 1.23627 0.80825 0.98320 0.96796 1.22586 0.95570 0.96621 0.96509 1.21816 0.91745 0.98878 1.00534 1.22839 0.93185 0.96394 1.03389 1.22130 1.08018 0.89162 0.99918 0.85883 1.19608 0.79112 0.82761 0.86102 1.90703 1.43237 1.80712 1.26754 1.45997 1.47665 1.18058 1.25528 1.21432 0.99721 0.85133 0.92772 1.22635 0.96526 0.95814 0.99639 0.89415 1.23448 0.99738 0.95246 0.99793 1.21521 0.89165 0.91934 0.92044 0.90694 1.42406 1.17973 1.71499 1.03174 1.19264 0.93663 1.32044 0.92721 0.91152 1.24766 0.98927 1.01908 0.95244 1.69655 1.38413 1.52954 0.96986 0.86267 0.84110 0.79219 0.76576 1.21225 1.21670 1.21259 1.23940 0.93143 1.02298 1.00750 1.23057 0.96718 0.98521 0.96638 0.91214 0.91787 0.91874 0.93512 0.93411 0.89446 0.90658 0.88391 0.87483 0.87787 0.76602 0.91829 0.91284 0.92024 0.90122 0.78063 0.93400 0.90388 0.92805 0.88697 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.38 6.50 37.16 0.24 0.62 16 3 O -0.37 -3.63 10.35 -35.23 -0.36 -4.00 16 4 C 0.06 0.53 4.31 -25.80 -0.11 0.42 16 5 C -0.08 -0.80 6.30 -26.13 -0.16 -0.96 16 6 C -0.13 -1.17 2.88 -154.80 -0.45 -1.61 16 7 C -0.12 -0.96 10.23 -26.95 -0.28 -1.24 16 8 C -0.17 -1.57 6.19 -91.99 -0.57 -2.14 16 9 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 10 C 0.54 6.76 7.61 -10.98 -0.08 6.68 16 11 O -0.54 -8.75 15.14 5.55 0.08 -8.66 16 12 N -0.72 -8.19 5.56 -60.29 -0.33 -8.52 16 13 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 14 C -0.13 -1.69 3.75 -89.81 -0.34 -2.03 16 15 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 16 C -0.14 -2.28 7.39 -25.92 -0.19 -2.47 16 17 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 18 H 0.08 1.43 8.10 -51.92 -0.42 1.01 16 19 N -0.71 -17.83 5.40 -52.64 -0.28 -18.11 16 20 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 24 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.16 -2.64 7.43 -25.92 -0.19 -2.83 16 29 C -0.11 -0.86 7.93 -26.13 -0.21 -1.07 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.61 7.87 -51.93 -0.41 0.21 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.23 8.04 -51.93 -0.42 0.81 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.40 3.52 8.47 -40.82 -0.35 3.17 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 45 H 0.39 10.28 7.93 -40.82 -0.32 9.96 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -32.68 409.15 -10.60 -43.28 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -9.04 Total: 9.98 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.52 Total: -9.90 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.11 Total: -54.13 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.28 Total: -12.66 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.68 -10.60 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086196848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.956 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds