Wall clock time and date at job start Tue Mar 31 2020 13:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42904 * 109.47673 * 2 1 4 4 C 1.42896 * 114.00127 * 184.60946 * 3 2 1 5 5 H 1.08997 * 109.47371 * 328.20153 * 4 3 2 6 6 C 1.50696 * 109.47397 * 88.20673 * 4 3 2 7 7 O 1.21282 * 119.99699 * 4.99540 * 6 4 3 8 8 N 1.34774 * 120.00213 * 184.99720 * 6 4 3 9 9 C 1.46502 * 120.00297 * 179.97438 * 8 6 4 10 10 H 1.08990 * 115.51246 * 350.41887 * 9 8 6 11 11 C 1.52995 * 117.44402 * 205.00095 * 9 8 6 12 12 H 1.09004 * 119.54004 * 4.11388 * 11 9 8 13 13 C 1.54380 * 118.12416 * 159.21397 * 11 9 8 14 14 N 1.51831 * 102.86917 * 88.01736 * 13 11 9 15 15 C 1.36939 * 127.61215 * 140.54219 * 14 13 11 16 16 H 1.07992 * 119.99940 * 194.49938 * 15 14 13 17 17 C 1.38813 * 119.99621 * 14.50119 * 15 14 13 18 18 N 1.31620 * 120.00233 * 9.63766 * 17 15 14 19 19 Si 1.86801 * 119.99717 * 189.63328 * 17 15 14 20 20 H 1.48503 * 109.47023 * 90.00191 * 19 17 15 21 21 H 1.48504 * 109.47207 * 209.99981 * 19 17 15 22 22 H 1.48500 * 109.47392 * 330.00040 * 19 17 15 23 23 C 1.48139 * 104.54828 * 320.27563 * 14 13 11 24 24 C 1.52998 * 117.43991 * 135.75987 * 9 8 6 25 25 H 1.08995 * 119.54516 * 355.88402 * 24 9 8 26 26 C 1.53001 * 109.46671 * 208.20450 * 4 3 2 27 27 C 1.54889 * 110.48843 * 306.61679 * 26 4 3 28 28 C 1.55238 * 102.58696 * 156.67600 * 27 26 4 29 29 C 1.54266 * 104.23461 * 322.08432 * 28 27 26 30 30 C 1.53875 * 106.59522 * 23.61332 * 29 28 27 31 31 H 1.09003 * 109.47104 * 300.00013 * 1 2 3 32 32 H 1.08998 * 109.47454 * 59.99707 * 1 2 3 33 33 H 1.08997 * 109.47692 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47104 * 239.99987 * 2 1 3 35 35 H 1.08998 * 109.47454 * 120.00293 * 2 1 3 36 36 H 0.97005 * 119.99548 * 0.02562 * 8 6 4 37 37 H 1.09004 * 110.40774 * 205.97438 * 13 11 9 38 38 H 1.09003 * 110.41109 * 328.40520 * 13 11 9 39 39 H 0.97003 * 120.00023 * 179.97438 * 18 17 15 40 40 H 1.09006 * 110.40821 * 281.06903 * 23 14 13 41 41 H 1.09001 * 110.40752 * 158.64131 * 23 14 13 42 42 H 1.09004 * 110.43603 * 184.07430 * 26 4 3 43 43 H 1.08999 * 110.75913 * 275.06771 * 27 26 4 44 44 H 1.08997 * 110.75358 * 38.44510 * 27 26 4 45 45 H 1.09001 * 110.47074 * 203.39415 * 28 27 26 46 46 H 1.09002 * 110.58082 * 80.83126 * 28 27 26 47 47 H 1.08997 * 110.03391 * 264.32528 * 29 28 27 48 48 H 1.09000 * 110.07333 * 142.91481 * 29 28 27 49 49 H 1.09001 * 110.02818 * 240.71213 * 30 29 28 50 50 H 1.09003 * 110.07388 * 119.30748 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4614 -0.1049 5 1 3.8970 0.6056 0.3796 6 6 3.8222 1.4953 -1.5587 7 8 2.9677 1.5197 -2.4190 8 7 5.1252 1.4983 -1.9029 9 6 5.5095 1.5307 -3.3162 10 1 4.6961 1.3872 -4.0273 11 6 6.8797 0.9601 -3.6877 12 1 7.4933 0.4916 -2.9181 13 6 7.1168 0.5313 -5.1516 14 7 7.6010 1.8132 -5.8054 15 6 8.5893 1.9516 -6.7431 16 1 8.9981 2.9281 -6.9567 17 6 9.0655 0.8366 -7.4192 18 7 8.4454 -0.3184 -7.3024 19 14 10.5864 0.9757 -8.4948 20 1 11.7957 0.6908 -7.6813 21 1 10.4967 -0.0033 -9.6078 22 1 10.6760 2.3499 -9.0503 23 6 6.7612 2.8765 -5.2065 24 6 6.6370 2.4835 -3.7187 25 1 7.0697 3.1497 -2.9724 26 6 3.8867 2.7506 0.5788 27 6 3.1086 3.9678 0.0201 28 6 3.2267 5.0022 1.1716 29 6 3.1077 4.1557 2.4557 30 6 3.5274 2.7241 2.0788 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 5.8086 1.4784 -1.2148 37 1 7.8872 -0.2382 -5.2022 38 1 6.1894 0.1717 -5.5974 39 1 8.7780 -1.0975 -7.7751 40 1 5.7785 2.8955 -5.6780 41 1 7.2491 3.8463 -5.3039 42 1 4.9596 2.8900 0.4460 43 1 3.5787 4.3427 -0.8890 44 1 2.0655 3.7091 -0.1614 45 1 2.4154 5.7281 1.1167 46 1 4.1921 5.5071 1.1356 47 1 2.0778 4.1612 2.8125 48 1 3.7715 4.5488 3.2258 49 1 2.7012 2.0348 2.2527 50 1 4.3951 2.4219 2.6653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114630424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:11 Heat of formation + Delta-G solvation = -36.207254 kcal Electronic energy + Delta-G solvation = -27976.581200 eV Core-core repulsion = 24198.042548 eV Total energy + Delta-G solvation = -3778.538652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43938 -38.87567 -37.75524 -37.08543 -34.35629 -32.79152 -31.96502 -30.38563 -29.65150 -28.87076 -27.14818 -26.21258 -25.17462 -23.06061 -21.95592 -21.00756 -20.49589 -20.24808 -19.92199 -19.20917 -17.57508 -17.04758 -16.80672 -16.09530 -15.87956 -15.68047 -15.27757 -14.69102 -14.35190 -14.13655 -13.77285 -13.59392 -13.51069 -13.23740 -13.05851 -12.74821 -12.52750 -12.18671 -12.06543 -11.65905 -11.57150 -11.47484 -11.46209 -11.38357 -11.22467 -11.01120 -10.90756 -10.83006 -10.71861 -10.65803 -10.47019 -10.40418 -10.19607 -10.13413 -9.68567 -9.34538 -9.13162 -8.74692 -8.33816 -6.88251 -5.78968 -3.11821 2.58376 2.97397 3.38573 3.43772 3.45901 3.49261 4.22503 4.29558 4.37335 4.46704 4.49997 4.68211 4.78772 4.91298 4.96618 5.09379 5.14786 5.18797 5.25382 5.31183 5.33826 5.36812 5.38333 5.43805 5.50548 5.53656 5.55744 5.68683 5.74031 5.75473 5.78838 5.89283 5.89489 5.95076 6.06430 6.10317 6.13891 6.21936 6.27665 6.52681 6.69287 6.75712 6.88991 6.91550 7.29731 7.50540 7.57547 7.69499 8.14419 8.28405 9.06371 9.73060 10.49730 11.36109 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002585 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.080855 B =10828.991014 C =11696.139336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.349 6.349 4 C 0.083 3.917 5 H 0.083 0.917 6 C 0.492 3.508 7 O -0.522 6.522 8 N -0.697 5.697 9 C 0.096 3.904 10 H 0.130 0.870 11 C -0.178 4.178 12 H 0.101 0.899 13 C 0.185 3.815 14 N -0.598 5.598 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.917 5.917 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.158 3.842 24 C -0.181 4.181 25 H 0.103 0.897 26 C -0.085 4.085 27 C -0.116 4.116 28 C -0.124 4.124 29 C -0.121 4.121 30 C -0.116 4.116 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.397 0.603 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.254 0.746 40 H 0.026 0.974 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 3.677 22.287 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.021 3.979 5 H 0.101 0.899 6 C 0.278 3.722 7 O -0.397 6.397 8 N -0.347 5.347 9 C -0.010 4.010 10 H 0.148 0.852 11 C -0.199 4.199 12 H 0.119 0.881 13 C 0.061 3.939 14 N -0.323 5.323 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.032 3.968 24 C -0.203 4.203 25 H 0.121 0.879 26 C -0.104 4.104 27 C -0.154 4.154 28 C -0.162 4.162 29 C -0.159 4.159 30 C -0.154 4.154 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.231 0.769 37 H 0.110 0.890 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.010 3.727 21.479 24.889 hybrid contribution 1.455 -0.301 -0.186 1.498 sum -10.554 3.426 21.293 24.011 Atomic orbital electron populations 1.21694 0.93484 1.02175 1.03161 1.22572 0.95987 0.83640 1.00033 1.87979 1.18538 1.26551 1.93607 1.21919 0.84130 0.99891 0.91925 0.89878 1.21287 0.82592 0.76480 0.91883 1.90717 1.49616 1.48003 1.51321 1.45453 1.07062 1.74527 1.07686 1.21861 0.93176 1.03717 0.82273 0.85210 1.24583 0.96538 0.96981 1.01846 0.88088 1.21695 0.98564 0.90215 0.83451 1.46070 1.38954 1.01027 1.46250 1.19025 1.09568 0.94314 1.12337 0.90500 1.24866 0.99932 0.96291 0.99339 1.69889 1.40000 1.00251 1.46216 0.86112 0.82664 0.77227 0.79714 1.21573 1.21684 1.20578 1.21057 0.94429 0.92992 0.88358 1.24370 1.02364 0.93716 0.99835 0.87945 1.22115 1.00031 0.92856 0.95384 1.22549 1.01629 0.93685 0.97512 1.22406 1.01595 0.97666 0.94532 1.22082 1.01280 0.94867 0.97648 1.22140 1.01339 0.97728 0.94155 0.92047 0.91511 0.91185 0.92950 0.93500 0.76934 0.89009 0.95034 0.93584 0.95653 0.93012 0.89279 0.91560 0.89884 0.91725 0.91767 0.91859 0.92078 0.90930 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.15 0.38 -0.90 16 2 C 0.05 0.54 6.42 37.15 0.24 0.78 16 3 O -0.35 -4.09 7.71 -55.09 -0.42 -4.51 16 4 C 0.08 0.87 2.23 -27.88 -0.06 0.81 16 5 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 6 C 0.49 6.94 6.60 -10.99 -0.07 6.86 16 7 O -0.52 -9.66 16.06 -14.31 -0.23 -9.89 16 8 N -0.70 -9.20 5.50 -53.81 -0.30 -9.50 16 9 C 0.10 1.61 5.97 -67.93 -0.41 1.20 16 10 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 11 C -0.18 -3.32 6.96 -89.23 -0.62 -3.94 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 C 0.19 4.44 5.92 -0.29 0.00 4.43 16 14 N -0.60 -15.39 3.45 -165.71 -0.57 -15.96 16 15 C -0.22 -6.26 10.36 -15.06 -0.16 -6.42 16 16 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 17 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 18 N -0.92 -26.87 10.84 55.49 0.60 -26.27 16 19 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.16 3.38 7.05 -2.41 -0.02 3.36 16 24 C -0.18 -3.22 7.06 -89.22 -0.63 -3.85 16 25 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 26 C -0.09 -0.76 2.70 -88.96 -0.24 -1.00 16 27 C -0.12 -1.20 5.85 -24.55 -0.14 -1.35 16 28 C -0.12 -1.04 6.84 -24.88 -0.17 -1.21 16 29 C -0.12 -0.90 6.80 -25.61 -0.17 -1.07 16 30 C -0.12 -0.87 6.29 -25.61 -0.16 -1.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.40 4.04 8.60 -40.82 -0.35 3.68 16 37 H 0.09 2.43 6.58 -51.93 -0.34 2.08 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.00 7.16 -51.93 -0.37 0.63 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.58 7.30 -51.93 -0.38 0.20 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -32.46 396.31 -11.25 -43.72 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -8.95 Total: 3.12 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.33 Total: -3.61 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.27 Total: -51.73 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.65 Total: -14.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.46 -11.25 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114630424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.508 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds