Wall clock time and date at job start Tue Mar 31 2020 13:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42904 * 109.47673 * 2 1 4 4 C 1.42896 * 114.00127 * 184.60946 * 3 2 1 5 5 H 1.08997 * 109.47371 * 328.20153 * 4 3 2 6 6 C 1.50696 * 109.47397 * 88.20673 * 4 3 2 7 7 O 1.21282 * 119.99699 * 4.99540 * 6 4 3 8 8 N 1.34774 * 120.00213 * 184.99720 * 6 4 3 9 9 C 1.46502 * 120.00297 * 179.97438 * 8 6 4 10 10 H 1.08990 * 115.51246 * 350.41887 * 9 8 6 11 11 C 1.52995 * 117.44402 * 205.00095 * 9 8 6 12 12 H 1.09004 * 119.54004 * 4.11388 * 11 9 8 13 13 C 1.54380 * 118.12416 * 159.21397 * 11 9 8 14 14 N 1.51831 * 102.86917 * 88.01736 * 13 11 9 15 15 C 1.36939 * 127.61215 * 140.54219 * 14 13 11 16 16 H 1.07992 * 119.99940 * 194.49938 * 15 14 13 17 17 C 1.38813 * 119.99621 * 14.50119 * 15 14 13 18 18 N 1.31620 * 120.00233 * 9.63766 * 17 15 14 19 19 Si 1.86801 * 119.99717 * 189.63328 * 17 15 14 20 20 H 1.48503 * 109.47023 * 90.00191 * 19 17 15 21 21 H 1.48504 * 109.47207 * 209.99981 * 19 17 15 22 22 H 1.48500 * 109.47392 * 330.00040 * 19 17 15 23 23 C 1.48139 * 104.54828 * 320.27563 * 14 13 11 24 24 C 1.52998 * 117.43991 * 135.75987 * 9 8 6 25 25 H 1.08995 * 119.54516 * 355.88402 * 24 9 8 26 26 C 1.53001 * 109.46671 * 208.20450 * 4 3 2 27 27 C 1.54889 * 110.48843 * 306.61679 * 26 4 3 28 28 C 1.55238 * 102.58696 * 156.67600 * 27 26 4 29 29 C 1.54266 * 104.23461 * 322.08432 * 28 27 26 30 30 C 1.53875 * 106.59522 * 23.61332 * 29 28 27 31 31 H 1.09003 * 109.47104 * 300.00013 * 1 2 3 32 32 H 1.08998 * 109.47454 * 59.99707 * 1 2 3 33 33 H 1.08997 * 109.47692 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47104 * 239.99987 * 2 1 3 35 35 H 1.08998 * 109.47454 * 120.00293 * 2 1 3 36 36 H 0.97005 * 119.99548 * 0.02562 * 8 6 4 37 37 H 1.09004 * 110.40774 * 205.97438 * 13 11 9 38 38 H 1.09003 * 110.41109 * 328.40520 * 13 11 9 39 39 H 0.97003 * 120.00023 * 179.97438 * 18 17 15 40 40 H 1.09006 * 110.40821 * 281.06903 * 23 14 13 41 41 H 1.09001 * 110.40752 * 158.64131 * 23 14 13 42 42 H 1.09004 * 110.43603 * 184.07430 * 26 4 3 43 43 H 1.08999 * 110.75913 * 275.06771 * 27 26 4 44 44 H 1.08997 * 110.75358 * 38.44510 * 27 26 4 45 45 H 1.09001 * 110.47074 * 203.39415 * 28 27 26 46 46 H 1.09002 * 110.58082 * 80.83126 * 28 27 26 47 47 H 1.08997 * 110.03391 * 264.32528 * 29 28 27 48 48 H 1.09000 * 110.07333 * 142.91481 * 29 28 27 49 49 H 1.09001 * 110.02818 * 240.71213 * 30 29 28 50 50 H 1.09003 * 110.07388 * 119.30748 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4614 -0.1049 5 1 3.8970 0.6056 0.3796 6 6 3.8222 1.4953 -1.5587 7 8 2.9677 1.5197 -2.4190 8 7 5.1252 1.4983 -1.9029 9 6 5.5095 1.5307 -3.3162 10 1 4.6961 1.3872 -4.0273 11 6 6.8797 0.9601 -3.6877 12 1 7.4933 0.4916 -2.9181 13 6 7.1168 0.5313 -5.1516 14 7 7.6010 1.8132 -5.8054 15 6 8.5893 1.9516 -6.7431 16 1 8.9981 2.9281 -6.9567 17 6 9.0655 0.8366 -7.4192 18 7 8.4454 -0.3184 -7.3024 19 14 10.5864 0.9757 -8.4948 20 1 11.7957 0.6908 -7.6813 21 1 10.4967 -0.0033 -9.6078 22 1 10.6760 2.3499 -9.0503 23 6 6.7612 2.8765 -5.2065 24 6 6.6370 2.4835 -3.7187 25 1 7.0697 3.1497 -2.9724 26 6 3.8867 2.7506 0.5788 27 6 3.1086 3.9678 0.0201 28 6 3.2267 5.0022 1.1716 29 6 3.1077 4.1557 2.4557 30 6 3.5274 2.7241 2.0788 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 5.8086 1.4784 -1.2148 37 1 7.8872 -0.2382 -5.2022 38 1 6.1894 0.1717 -5.5974 39 1 8.7780 -1.0975 -7.7751 40 1 5.7785 2.8955 -5.6780 41 1 7.2491 3.8463 -5.3039 42 1 4.9596 2.8900 0.4460 43 1 3.5787 4.3427 -0.8890 44 1 2.0655 3.7091 -0.1614 45 1 2.4154 5.7281 1.1167 46 1 4.1921 5.5071 1.1356 47 1 2.0778 4.1612 2.8125 48 1 3.7715 4.5488 3.2258 49 1 2.7012 2.0348 2.2527 50 1 4.3951 2.4219 2.6653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114630424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:10 Heat of formation + Delta-G solvation = -55.188397 kcal Electronic energy + Delta-G solvation = -27977.404284 eV Core-core repulsion = 24198.042548 eV Total energy + Delta-G solvation = -3779.361737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51132 -40.22598 -38.85767 -37.89847 -35.97089 -34.40617 -32.90452 -31.99710 -30.56703 -29.52328 -28.93098 -27.75830 -26.46201 -23.85805 -23.51894 -22.01964 -21.98731 -21.13034 -20.85365 -20.69687 -18.88683 -18.56516 -18.02388 -17.22227 -16.82317 -16.66478 -16.40071 -16.19771 -15.59200 -15.30798 -15.18946 -14.86351 -14.63363 -14.40551 -14.18926 -13.85317 -13.74686 -13.35257 -13.24088 -13.18920 -12.92150 -12.85978 -12.71596 -12.38064 -12.25692 -12.16544 -12.03585 -11.99460 -11.90083 -11.85582 -11.68028 -11.63430 -11.45344 -11.35356 -11.17373 -10.88342 -10.74024 -10.27235 -9.72724 -8.94875 -7.91832 -5.27332 1.46175 1.46978 1.48487 1.57494 1.85821 2.48009 2.66651 2.83763 3.28011 3.44328 3.54701 3.62643 3.75644 3.81748 3.88746 3.91422 4.07996 4.11580 4.18095 4.28965 4.36098 4.41945 4.47836 4.49914 4.58857 4.66214 4.71182 4.75769 4.80187 4.85466 4.87770 4.90933 4.96673 5.03029 5.03692 5.15901 5.24815 5.25862 5.30746 5.37072 5.37956 5.43472 5.51199 5.52247 5.56354 5.62889 6.06944 6.11050 6.52791 6.94469 7.20138 7.64157 8.43967 9.22771 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002585 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.080855 B =10828.991014 C =11696.139336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.089 3.911 5 H 0.116 0.884 6 C 0.491 3.509 7 O -0.573 6.573 8 N -0.680 5.680 9 C 0.115 3.885 10 H 0.099 0.901 11 C -0.174 4.174 12 H 0.129 0.871 13 C 0.187 3.813 14 N -0.622 5.622 15 C -0.239 4.239 16 H 0.082 0.918 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.268 1.268 23 C 0.150 3.850 24 C -0.164 4.164 25 H 0.138 0.862 26 C -0.082 4.082 27 C -0.120 4.120 28 C -0.122 4.122 29 C -0.120 4.120 30 C -0.111 4.111 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.418 0.582 37 H 0.062 0.938 38 H 0.002 0.998 39 H 0.250 0.750 40 H 0.013 0.987 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 4.425 25.489 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 O -0.283 6.283 4 C 0.027 3.973 5 H 0.134 0.866 6 C 0.278 3.722 7 O -0.451 6.451 8 N -0.332 5.332 9 C 0.008 3.992 10 H 0.117 0.883 11 C -0.195 4.195 12 H 0.147 0.853 13 C 0.062 3.938 14 N -0.347 5.347 15 C -0.368 4.368 16 H 0.100 0.900 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.209 1.209 21 H -0.222 1.222 22 H -0.193 1.193 23 C 0.025 3.975 24 C -0.185 4.185 25 H 0.155 0.845 26 C -0.101 4.101 27 C -0.158 4.158 28 C -0.159 4.159 29 C -0.158 4.158 30 C -0.148 4.148 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.256 0.744 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.835 4.502 24.738 27.379 hybrid contribution 0.972 -0.508 -1.233 1.650 sum -9.863 3.994 23.504 25.801 Atomic orbital electron populations 1.21708 0.92862 1.03228 1.02514 1.22733 0.96676 0.83040 1.00348 1.87987 1.19334 1.27645 1.93350 1.22073 0.83972 1.02106 0.89153 0.86628 1.22131 0.81982 0.74814 0.93268 1.90704 1.51030 1.50251 1.53135 1.45239 1.07651 1.73948 1.06331 1.21351 0.91455 1.02422 0.84008 0.88317 1.24271 0.98443 0.97678 0.99120 0.85306 1.21439 0.96079 0.89415 0.86840 1.46395 1.39238 1.02611 1.46484 1.19424 1.10001 0.94635 1.12711 0.89980 1.25729 1.02939 0.96020 1.01094 1.70090 1.41535 1.00804 1.47320 0.85036 0.78951 0.77412 0.77660 1.20945 1.22243 1.19299 1.21188 0.93232 0.92639 0.90460 1.24273 1.02610 0.93432 0.98182 0.84461 1.22200 1.00711 0.90958 0.96199 1.22499 1.00232 0.95373 0.97712 1.22397 1.01987 0.97310 0.94223 1.22090 1.01654 0.94704 0.97306 1.22124 1.02133 0.97643 0.92919 0.91086 0.93697 0.89321 0.95016 0.90591 0.74441 0.91940 0.98000 0.94125 0.96938 0.91828 0.87378 0.93431 0.92340 0.91943 0.90946 0.92057 0.90560 0.91316 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.90 6.42 71.98 0.46 1.36 16 3 O -0.37 -8.16 7.71 -129.99 -1.00 -9.16 16 4 C 0.09 1.66 2.23 29.85 0.07 1.73 16 5 H 0.12 1.46 7.85 -2.39 -0.02 1.44 16 6 C 0.49 13.32 6.60 87.66 0.58 13.90 16 7 O -0.57 -21.74 16.06 15.96 0.26 -21.49 16 8 N -0.68 -16.50 5.50 -442.56 -2.43 -18.93 16 9 C 0.11 3.79 5.97 44.99 0.27 4.06 16 10 H 0.10 3.99 7.40 -2.39 -0.02 3.97 16 11 C -0.17 -6.33 6.96 -9.89 -0.07 -6.40 16 12 H 0.13 4.00 8.14 -2.38 -0.02 3.98 16 13 C 0.19 9.26 5.92 85.79 0.51 9.77 16 14 N -0.62 -32.59 3.45 -678.18 -2.34 -34.93 16 15 C -0.24 -13.51 10.36 84.03 0.87 -12.64 16 16 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 17 C -0.06 -3.67 5.41 84.86 0.46 -3.22 16 18 N -0.95 -57.47 10.84 21.65 0.23 -57.24 16 19 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 C 0.15 6.42 7.05 86.54 0.61 7.03 16 24 C -0.16 -5.54 7.06 -9.89 -0.07 -5.61 16 25 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 26 C -0.08 -1.23 2.70 -9.72 -0.03 -1.26 16 27 C -0.12 -2.37 5.85 32.01 0.19 -2.19 16 28 C -0.12 -1.79 6.84 31.79 0.22 -1.57 16 29 C -0.12 -1.42 6.80 31.32 0.21 -1.20 16 30 C -0.11 -1.26 6.29 31.32 0.20 -1.06 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.71 8.07 -2.39 -0.02 0.70 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.42 6.83 8.60 -92.70 -0.80 6.03 16 37 H 0.06 3.44 6.58 -2.39 -0.02 3.42 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 40 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.11 1.24 7.88 -2.38 -0.02 1.22 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.43 7.16 -2.39 -0.02 1.42 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.86 7.30 -2.39 -0.02 0.85 16 50 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -74.43 396.31 2.07 -72.36 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.11 Total: 20.70 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 5.21 Total: 1.04 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.54 Total: -111.11 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.75 Total: -30.65 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.43 2.07 -72.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114630424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.168 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds