Wall clock time and date at job start Tue Mar 31 2020 13:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 O 1.42898 * 109.47049 * 120.00278 * 2 1 3 5 5 C 1.42903 * 114.00160 * 270.00076 * 4 2 1 6 6 C 1.52991 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.53005 * 117.51617 * 116.28704 * 6 5 4 8 8 C 1.52991 * 60.00343 * 107.48069 * 7 6 5 9 9 C 1.50702 * 109.47146 * 240.00181 * 2 1 3 10 10 O 1.21275 * 120.00080 * 244.99842 * 9 2 1 11 11 N 1.34777 * 119.99974 * 64.99873 * 9 2 1 12 12 C 1.46496 * 119.99797 * 179.97438 * 11 9 2 13 13 C 1.53011 * 109.46656 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.46834 * 180.02562 * 13 12 11 15 15 C 1.29452 * 117.69423 * 95.00002 * 14 13 12 16 16 C 1.50325 * 123.65063 * 180.86074 * 15 14 13 17 17 N 1.47004 * 109.16759 * 349.01861 * 16 15 14 18 18 C 1.36929 * 121.37893 * 222.97098 * 17 16 15 19 19 H 1.07996 * 120.00179 * 155.96992 * 18 17 16 20 20 C 1.38818 * 120.00036 * 335.97610 * 18 17 16 21 21 N 1.31611 * 119.99619 * 344.50728 * 20 18 17 22 22 Si 1.86797 * 120.00069 * 164.51190 * 20 18 17 23 23 H 1.48498 * 109.47378 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47087 * 119.99715 * 22 20 18 25 25 H 1.48498 * 109.47110 * 239.99575 * 22 20 18 26 26 C 1.47346 * 117.24785 * 42.94994 * 17 16 15 27 27 C 1.49974 * 117.69226 * 274.74174 * 14 13 12 28 28 H 1.08996 * 109.46948 * 59.99739 * 1 2 3 29 29 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46912 * 299.99716 * 1 2 3 31 31 H 1.08999 * 109.47060 * 59.99817 * 5 4 2 32 32 H 1.09004 * 109.46744 * 300.00134 * 5 4 2 33 33 H 1.08995 * 115.55706 * 330.58271 * 6 5 4 34 34 H 1.09007 * 117.49615 * 214.96723 * 7 6 5 35 35 H 1.09003 * 117.50395 * 359.97438 * 7 6 5 36 36 H 1.09004 * 117.49798 * 252.51376 * 8 7 6 37 37 H 1.09002 * 117.50290 * 107.48746 * 8 7 6 38 38 H 0.97001 * 120.00111 * 0.02562 * 11 9 2 39 39 H 1.09002 * 109.47310 * 300.00071 * 12 11 9 40 40 H 1.08998 * 109.47429 * 60.00206 * 12 11 9 41 41 H 1.08993 * 109.47318 * 299.99869 * 13 12 11 42 42 H 1.09000 * 109.46968 * 60.00452 * 13 12 11 43 43 H 1.08003 * 118.17442 * 0.87574 * 15 14 13 44 44 H 1.08993 * 109.52459 * 108.92933 * 16 15 14 45 45 H 1.09006 * 109.52020 * 229.11276 * 16 15 14 46 46 H 0.96998 * 119.99908 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.77527 * 57.81014 * 26 17 16 48 48 H 1.08998 * 109.77700 * 178.62085 * 26 17 16 49 49 H 1.08997 * 109.31276 * 281.28436 * 27 14 13 50 50 H 1.09000 * 109.31605 * 40.71777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1828 2.2941 6 6 2.7090 -0.6407 3.4788 7 6 4.1068 -0.3216 4.0130 8 6 2.8700 0.0766 4.8207 9 6 2.0324 -0.7104 -1.2305 10 8 2.6530 -1.7466 -1.1216 11 7 1.7919 -0.1941 -2.4520 12 6 2.2807 -0.8844 -3.6481 13 6 1.8763 -0.0938 -4.8942 14 6 2.3786 -0.8042 -6.1247 15 6 1.5635 -1.6065 -6.7311 16 6 1.9296 -2.3961 -7.9568 17 7 3.2168 -1.9120 -8.4762 18 6 3.4182 -1.7211 -9.8170 19 1 4.1752 -1.0296 -10.1563 20 6 2.6492 -2.4163 -10.7403 21 7 1.9519 -3.4653 -10.3590 22 14 2.6043 -1.8629 -12.5239 23 1 3.4690 -0.6675 -12.6933 24 1 3.0997 -2.9589 -13.3948 25 1 1.2090 -1.5228 -12.9016 26 6 4.2812 -1.6402 -7.4942 27 6 3.7857 -0.5273 -6.5638 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.2538 0.6545 2.5589 32 1 2.9320 0.9512 2.0450 33 1 2.3878 -1.6820 3.5002 34 1 4.7051 -1.1531 4.3858 35 1 4.6643 0.4750 3.5202 36 1 2.6135 1.1353 4.8593 37 1 2.6544 -0.4929 5.7247 38 1 1.2958 0.6349 -2.5392 39 1 3.3671 -0.9622 -3.6043 40 1 1.8466 -1.8831 -3.6943 41 1 0.7901 -0.0157 -4.9383 42 1 2.3110 0.9047 -4.8479 43 1 0.5648 -1.7144 -6.3344 44 1 2.0149 -3.4515 -7.6982 45 1 1.1586 -2.2675 -8.7166 46 1 1.4149 -3.9513 -11.0042 47 1 4.4907 -2.5417 -6.9183 48 1 5.1840 -1.3130 -8.0100 49 1 3.8182 0.4274 -7.0886 50 1 4.4332 -0.4767 -5.6884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159470708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:18 Heat of formation + Delta-G solvation = -27.133898 kcal Electronic energy + Delta-G solvation = -26497.800924 eV Core-core repulsion = 22719.655722 eV Total energy + Delta-G solvation = -3778.145202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17002 -38.61411 -37.86983 -36.86828 -35.38213 -33.64594 -32.08710 -31.14386 -29.80018 -28.59488 -27.52004 -25.59799 -24.23866 -22.92281 -22.80221 -22.38105 -21.24632 -20.96609 -20.37420 -17.67422 -17.53524 -17.42089 -16.26607 -16.14006 -15.79730 -15.33488 -15.20263 -14.95037 -14.58123 -14.27169 -14.05808 -13.80836 -13.59407 -13.39812 -13.25752 -12.94111 -12.74944 -12.60122 -12.19563 -12.02756 -11.98725 -11.92281 -11.55884 -11.44296 -11.39390 -10.99702 -10.90240 -10.89670 -10.73008 -10.72907 -10.28341 -10.25588 -10.10787 -9.79900 -9.67092 -9.48962 -9.14818 -8.64337 -7.90933 -6.70638 -5.77003 -3.15621 2.48053 2.54947 2.96096 3.30343 3.38500 3.45960 3.48200 3.59934 4.31169 4.40707 4.45456 4.51148 4.52505 4.58679 4.69088 4.85731 4.97908 5.11281 5.14556 5.16938 5.18962 5.20900 5.28005 5.31570 5.41543 5.47157 5.57514 5.65926 5.67169 5.69535 5.77969 5.80737 6.01818 6.06001 6.16493 6.22661 6.33210 6.41227 6.57398 6.72604 6.80895 6.92937 7.25265 7.32357 7.37134 7.43295 7.77254 7.90125 8.10273 8.41010 9.22561 9.85462 10.44262 11.33421 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.037288 B = 0.001764 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.723122 B =15870.461809 C =16123.294224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.085 0.915 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.176 4.176 8 C -0.174 4.174 9 C 0.510 3.490 10 O -0.516 6.516 11 N -0.728 5.728 12 C 0.125 3.875 13 C -0.091 4.091 14 C -0.143 4.143 15 C -0.146 4.146 16 C 0.196 3.804 17 N -0.596 5.596 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.909 5.909 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.143 3.857 27 C -0.091 4.091 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.398 0.602 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 11.894 26.639 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.010 3.990 3 H 0.103 0.897 4 O -0.271 6.271 5 C 0.014 3.986 6 C -0.171 4.171 7 C -0.213 4.213 8 C -0.211 4.211 9 C 0.294 3.706 10 O -0.390 6.390 11 N -0.382 5.382 12 C 0.002 3.998 13 C -0.128 4.128 14 C -0.144 4.144 15 C -0.165 4.165 16 C 0.071 3.929 17 N -0.319 5.319 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.130 4.130 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.546 10.813 26.600 28.826 hybrid contribution -0.503 0.928 -0.939 1.412 sum -3.049 11.740 25.661 28.383 Atomic orbital electron populations 1.22240 0.93450 1.04062 1.03090 1.21883 0.95124 0.96165 0.85792 0.89743 1.88062 1.86451 1.33908 1.18701 1.22119 0.99188 0.91959 0.85291 1.22107 1.00613 1.01170 0.93255 1.23079 0.90840 1.03655 1.03744 1.22982 1.02591 1.01035 0.94482 1.20340 0.80195 0.85785 0.84245 1.90749 1.38985 1.22936 1.86356 1.46034 1.58364 1.27967 1.05832 1.21460 0.99905 0.96255 0.82141 1.20907 1.00662 0.98685 0.92596 1.20228 0.97000 1.00894 0.96314 1.23123 0.97605 0.96969 0.98815 1.19708 0.89034 0.93507 0.90646 1.44140 1.07667 1.77899 1.02175 1.19232 1.18983 1.18025 0.81142 0.91359 1.24991 1.01242 0.95831 0.97954 1.70026 1.33610 1.18111 1.33714 0.86186 0.77392 0.77990 0.85013 1.20338 1.21772 1.21643 1.20997 0.91886 0.94485 0.91038 1.20791 0.92932 1.00614 0.98658 0.90837 0.90894 0.91225 0.92675 0.93044 0.86637 0.88465 0.88638 0.88692 0.88336 0.76808 0.91211 0.91182 0.91522 0.91472 0.89070 0.94399 0.89150 0.93698 0.95769 0.92565 0.91928 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.07 0.65 3.13 -27.88 -0.09 0.56 16 3 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 4 O -0.35 -3.98 9.53 -55.09 -0.52 -4.50 16 5 C 0.09 0.71 6.03 37.15 0.22 0.93 16 6 C -0.15 -1.18 6.06 -90.62 -0.55 -1.73 16 7 C -0.18 -1.19 10.18 -26.73 -0.27 -1.47 16 8 C -0.17 -0.98 10.25 -26.73 -0.27 -1.25 16 9 C 0.51 6.42 7.18 -10.98 -0.08 6.34 16 10 O -0.52 -9.18 16.51 -14.30 -0.24 -9.41 16 11 N -0.73 -7.55 5.52 -60.29 -0.33 -7.88 16 12 C 0.13 1.62 5.66 -4.04 -0.02 1.59 16 13 C -0.09 -1.15 5.32 -27.88 -0.15 -1.30 16 14 C -0.14 -2.46 5.11 -100.99 -0.52 -2.98 16 15 C -0.15 -2.82 9.47 -35.78 -0.34 -3.16 16 16 C 0.20 4.75 5.23 -5.10 -0.03 4.73 16 17 N -0.60 -15.18 3.01 -173.56 -0.52 -15.70 16 18 C -0.24 -6.77 9.71 -15.06 -0.15 -6.92 16 19 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 20 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 21 N -0.91 -26.52 11.08 55.49 0.61 -25.90 16 22 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.14 3.04 6.59 -3.43 -0.02 3.02 16 27 C -0.09 -1.61 5.95 -28.08 -0.17 -1.78 16 28 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 32 H 0.05 0.35 7.82 -51.93 -0.41 -0.05 16 33 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.40 2.75 8.26 -40.82 -0.34 2.41 16 39 H 0.07 1.00 8.11 -51.93 -0.42 0.57 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 42 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.09 1.56 7.73 -52.48 -0.41 1.15 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -33.85 406.11 -11.03 -44.89 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.97 Total: -0.05 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.16 Total: -4.36 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.24 Total: -49.48 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.76 Total: -13.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.85 -11.03 -44.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159470708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.754 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds