Wall clock time and date at job start Tue Mar 31 2020 13:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 O 1.42898 * 109.47049 * 120.00278 * 2 1 3 5 5 C 1.42903 * 114.00160 * 270.00076 * 4 2 1 6 6 C 1.52991 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.53005 * 117.51617 * 116.28704 * 6 5 4 8 8 C 1.52991 * 60.00343 * 107.48069 * 7 6 5 9 9 C 1.50702 * 109.47146 * 240.00181 * 2 1 3 10 10 O 1.21275 * 120.00080 * 244.99842 * 9 2 1 11 11 N 1.34777 * 119.99974 * 64.99873 * 9 2 1 12 12 C 1.46496 * 119.99797 * 179.97438 * 11 9 2 13 13 C 1.53011 * 109.46656 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.46834 * 180.02562 * 13 12 11 15 15 C 1.29452 * 117.69423 * 95.00002 * 14 13 12 16 16 C 1.50325 * 123.65063 * 180.86074 * 15 14 13 17 17 N 1.47004 * 109.16759 * 349.01861 * 16 15 14 18 18 C 1.36929 * 121.37893 * 222.97098 * 17 16 15 19 19 H 1.07996 * 120.00179 * 155.96992 * 18 17 16 20 20 C 1.38818 * 120.00036 * 335.97610 * 18 17 16 21 21 N 1.31611 * 119.99619 * 344.50728 * 20 18 17 22 22 Si 1.86797 * 120.00069 * 164.51190 * 20 18 17 23 23 H 1.48498 * 109.47378 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47087 * 119.99715 * 22 20 18 25 25 H 1.48498 * 109.47110 * 239.99575 * 22 20 18 26 26 C 1.47346 * 117.24785 * 42.94994 * 17 16 15 27 27 C 1.49974 * 117.69226 * 274.74174 * 14 13 12 28 28 H 1.08996 * 109.46948 * 59.99739 * 1 2 3 29 29 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46912 * 299.99716 * 1 2 3 31 31 H 1.08999 * 109.47060 * 59.99817 * 5 4 2 32 32 H 1.09004 * 109.46744 * 300.00134 * 5 4 2 33 33 H 1.08995 * 115.55706 * 330.58271 * 6 5 4 34 34 H 1.09007 * 117.49615 * 214.96723 * 7 6 5 35 35 H 1.09003 * 117.50395 * 359.97438 * 7 6 5 36 36 H 1.09004 * 117.49798 * 252.51376 * 8 7 6 37 37 H 1.09002 * 117.50290 * 107.48746 * 8 7 6 38 38 H 0.97001 * 120.00111 * 0.02562 * 11 9 2 39 39 H 1.09002 * 109.47310 * 300.00071 * 12 11 9 40 40 H 1.08998 * 109.47429 * 60.00206 * 12 11 9 41 41 H 1.08993 * 109.47318 * 299.99869 * 13 12 11 42 42 H 1.09000 * 109.46968 * 60.00452 * 13 12 11 43 43 H 1.08003 * 118.17442 * 0.87574 * 15 14 13 44 44 H 1.08993 * 109.52459 * 108.92933 * 16 15 14 45 45 H 1.09006 * 109.52020 * 229.11276 * 16 15 14 46 46 H 0.96998 * 119.99908 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.77527 * 57.81014 * 26 17 16 48 48 H 1.08998 * 109.77700 * 178.62085 * 26 17 16 49 49 H 1.08997 * 109.31276 * 281.28436 * 27 14 13 50 50 H 1.09000 * 109.31605 * 40.71777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1828 2.2941 6 6 2.7090 -0.6407 3.4788 7 6 4.1068 -0.3216 4.0130 8 6 2.8700 0.0766 4.8207 9 6 2.0324 -0.7104 -1.2305 10 8 2.6530 -1.7466 -1.1216 11 7 1.7919 -0.1941 -2.4520 12 6 2.2807 -0.8844 -3.6481 13 6 1.8763 -0.0938 -4.8942 14 6 2.3786 -0.8042 -6.1247 15 6 1.5635 -1.6065 -6.7311 16 6 1.9296 -2.3961 -7.9568 17 7 3.2168 -1.9120 -8.4762 18 6 3.4182 -1.7211 -9.8170 19 1 4.1752 -1.0296 -10.1563 20 6 2.6492 -2.4163 -10.7403 21 7 1.9519 -3.4653 -10.3590 22 14 2.6043 -1.8629 -12.5239 23 1 3.4690 -0.6675 -12.6933 24 1 3.0997 -2.9589 -13.3948 25 1 1.2090 -1.5228 -12.9016 26 6 4.2812 -1.6402 -7.4942 27 6 3.7857 -0.5273 -6.5638 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.2538 0.6545 2.5589 32 1 2.9320 0.9512 2.0450 33 1 2.3878 -1.6820 3.5002 34 1 4.7051 -1.1531 4.3858 35 1 4.6643 0.4750 3.5202 36 1 2.6135 1.1353 4.8593 37 1 2.6544 -0.4929 5.7247 38 1 1.2958 0.6349 -2.5392 39 1 3.3671 -0.9622 -3.6043 40 1 1.8466 -1.8831 -3.6943 41 1 0.7901 -0.0157 -4.9383 42 1 2.3110 0.9047 -4.8479 43 1 0.5648 -1.7144 -6.3344 44 1 2.0149 -3.4515 -7.6982 45 1 1.1586 -2.2675 -8.7166 46 1 1.4149 -3.9513 -11.0042 47 1 4.4907 -2.5417 -6.9183 48 1 5.1840 -1.3130 -8.0100 49 1 3.8182 0.4274 -7.0886 50 1 4.4332 -0.4767 -5.6884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159470708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:17 Heat of formation + Delta-G solvation = -47.663941 kcal Electronic energy + Delta-G solvation = -26498.691173 eV Core-core repulsion = 22719.655722 eV Total energy + Delta-G solvation = -3779.035452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08058 -39.57605 -39.14534 -37.50957 -36.69536 -35.16824 -33.36745 -32.41764 -31.45540 -30.00861 -28.06855 -27.21610 -25.33220 -24.47986 -23.73935 -23.25875 -22.47699 -21.84086 -21.31114 -19.46270 -18.39661 -18.17496 -17.57658 -17.09378 -16.82938 -16.82469 -16.26805 -16.00186 -15.66270 -15.44799 -15.32890 -15.11795 -15.01100 -14.61506 -14.30646 -13.95860 -13.86792 -13.61478 -13.37172 -13.23319 -13.19469 -12.84211 -12.80732 -12.62855 -12.60396 -12.38424 -12.36114 -12.12732 -12.00911 -11.88517 -11.67016 -11.41817 -11.28956 -11.23436 -10.87815 -10.69661 -10.38669 -10.14746 -9.48501 -8.75607 -7.88343 -5.30646 1.39782 1.46428 1.47165 1.54995 1.58449 1.87317 2.50843 2.70472 3.00689 3.28463 3.61909 3.68810 3.84819 3.91122 3.96252 3.97076 4.05646 4.09799 4.13674 4.16925 4.29982 4.33670 4.46676 4.55435 4.58722 4.67811 4.68750 4.71678 4.77136 4.80949 4.86640 4.91351 4.97851 5.00668 5.08616 5.17856 5.21052 5.21223 5.23745 5.24279 5.38244 5.41999 5.50315 5.60860 5.88192 6.11468 6.28840 6.33345 6.56456 7.12825 7.22804 7.82836 8.37959 9.20474 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.037288 B = 0.001764 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.723122 B =15870.461809 C =16123.294224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 H 0.121 0.879 4 O -0.390 6.390 5 C 0.089 3.911 6 C -0.176 4.176 7 C -0.186 4.186 8 C -0.154 4.154 9 C 0.504 3.496 10 O -0.579 6.579 11 N -0.709 5.709 12 C 0.132 3.868 13 C -0.077 4.077 14 C -0.122 4.122 15 C -0.174 4.174 16 C 0.206 3.794 17 N -0.615 5.615 18 C -0.257 4.257 19 H 0.072 0.928 20 C -0.057 4.057 21 N -0.942 5.942 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.134 3.866 27 C -0.087 4.087 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.420 0.580 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.001 0.999 45 H 0.055 0.945 46 H 0.249 0.751 47 H 0.016 0.984 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 15.681 28.251 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.138 0.862 4 O -0.309 6.309 5 C 0.013 3.987 6 C -0.194 4.194 7 C -0.223 4.223 8 C -0.190 4.190 9 C 0.291 3.709 10 O -0.458 6.458 11 N -0.363 5.363 12 C 0.008 3.992 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.194 4.194 16 C 0.081 3.919 17 N -0.339 5.339 18 C -0.387 4.387 19 H 0.090 0.910 20 C -0.252 4.252 21 N -0.589 5.589 22 Si 0.800 3.200 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.216 1.216 26 C 0.009 3.991 27 C -0.125 4.125 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.258 0.742 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.034 0.966 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.988 14.666 28.232 31.954 hybrid contribution -0.265 -0.268 -1.378 1.429 sum -3.253 14.398 26.854 30.643 Atomic orbital electron populations 1.22248 0.91537 1.03257 1.05286 1.22026 0.96365 0.96812 0.83457 0.86196 1.88030 1.86894 1.35992 1.20034 1.22287 1.00568 0.91661 0.84161 1.22151 1.01595 1.00742 0.94904 1.23160 0.90922 1.03880 1.04370 1.23068 1.00660 1.01797 0.93511 1.21147 0.78999 0.85086 0.85676 1.90724 1.41950 1.25807 1.87282 1.45793 1.57691 1.28297 1.04539 1.21176 0.99030 0.95610 0.83343 1.20800 1.02010 0.99043 0.89550 1.20602 0.96102 0.98767 0.96785 1.22825 0.99672 0.98882 0.97972 1.19356 0.87983 0.92657 0.91933 1.44429 1.09075 1.78011 1.02362 1.19591 1.18841 1.17737 0.82550 0.91033 1.25809 1.01314 0.95990 1.02069 1.70206 1.34543 1.19351 1.34823 0.85131 0.77301 0.77700 0.79876 1.18896 1.22041 1.21634 1.21200 0.91347 0.95590 0.90992 1.20746 0.93766 0.99051 0.98969 0.88526 0.93192 0.89139 0.90526 0.91993 0.88595 0.88797 0.88172 0.87003 0.87618 0.74245 0.92503 0.93540 0.89516 0.88547 0.86834 0.98173 0.92630 0.94162 0.96606 0.92241 0.91090 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.48 71.98 0.68 -1.06 16 2 C 0.07 1.16 3.13 29.85 0.09 1.25 16 3 H 0.12 1.00 7.79 -2.39 -0.02 0.98 16 4 O -0.39 -8.42 9.53 -129.99 -1.24 -9.66 16 5 C 0.09 1.21 6.03 71.98 0.43 1.65 16 6 C -0.18 -2.59 6.06 -10.79 -0.07 -2.65 16 7 C -0.19 -2.36 10.18 30.59 0.31 -2.05 16 8 C -0.15 -1.43 10.25 30.59 0.31 -1.12 16 9 C 0.50 11.98 7.18 87.66 0.63 12.61 16 10 O -0.58 -20.92 16.51 15.98 0.26 -20.65 16 11 N -0.71 -12.65 5.52 -463.05 -2.55 -15.21 16 12 C 0.13 3.13 5.66 86.38 0.49 3.62 16 13 C -0.08 -1.64 5.32 29.85 0.16 -1.48 16 14 C -0.12 -3.92 5.11 -15.13 -0.08 -4.00 16 15 C -0.17 -6.72 9.47 27.11 0.26 -6.46 16 16 C 0.21 10.45 5.23 85.42 0.45 10.90 16 17 N -0.61 -32.09 3.01 -703.01 -2.11 -34.20 16 18 C -0.26 -14.51 9.71 84.04 0.82 -13.69 16 19 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 20 C -0.06 -3.27 5.01 84.86 0.43 -2.85 16 21 N -0.94 -57.24 11.08 21.65 0.24 -57.00 16 22 Si 0.97 45.61 29.58 68.60 2.03 47.64 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 C 0.13 5.72 6.59 86.32 0.57 6.28 16 27 C -0.09 -2.87 5.95 29.72 0.18 -2.70 16 28 H 0.10 0.55 7.92 -2.39 -0.02 0.53 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.08 0.68 7.87 -2.39 -0.02 0.66 16 32 H 0.06 0.69 7.82 -2.38 -0.02 0.67 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.10 1.15 8.03 -2.39 -0.02 1.13 16 36 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.42 3.88 8.26 -92.71 -0.77 3.12 16 39 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.61 7.78 -2.39 -0.02 1.59 16 42 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 43 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.06 3.15 6.41 -2.38 -0.02 3.13 16 46 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 48 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -79.02 406.11 2.43 -76.59 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.14 Total: 14.23 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.66 Total: -1.74 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -4.43 Total: -106.41 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.97 Total: -30.31 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -79.02 2.43 -76.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159470708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.930 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds