Wall clock time and date at job start Tue Mar 31 2020 13:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47114 * 2 1 4 4 C 1.50700 * 109.47372 * 239.99631 * 2 1 3 5 5 O 1.21280 * 120.00462 * 239.99898 * 4 2 1 6 6 N 1.34779 * 119.99811 * 60.00248 * 4 2 1 7 7 C 1.46499 * 120.00066 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47099 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47146 * 179.97438 * 8 7 6 10 10 C 1.29459 * 117.69481 * 94.73928 * 9 8 7 11 11 C 1.50320 * 123.65598 * 180.58518 * 10 9 8 12 12 N 1.47010 * 109.19984 * 349.50411 * 11 10 9 13 13 C 1.36937 * 121.36975 * 222.75873 * 12 11 10 14 14 H 1.08006 * 119.99671 * 155.95499 * 13 12 11 15 15 C 1.38814 * 120.00383 * 335.95422 * 13 12 11 16 16 N 1.31621 * 119.99629 * 344.53905 * 15 13 12 17 17 Si 1.86793 * 120.00111 * 164.53477 * 15 13 12 18 18 H 1.48504 * 109.47258 * 59.99856 * 17 15 13 19 19 H 1.48502 * 109.47360 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47197 * 300.00038 * 17 15 13 21 21 C 1.47335 * 117.25248 * 42.73773 * 12 11 10 22 22 C 1.49973 * 117.69492 * 274.99941 * 9 8 7 23 23 C 1.53005 * 109.47078 * 119.99845 * 2 1 3 24 24 H 1.09000 * 109.86900 * 61.00780 * 23 2 1 25 25 C 1.54096 * 109.87763 * 300.00022 * 23 2 1 26 26 C 1.54815 * 104.30440 * 238.47610 * 25 23 2 27 27 C 1.55228 * 101.98774 * 339.26425 * 26 25 23 28 28 O 1.43743 * 109.87993 * 182.16920 * 23 2 1 29 29 H 1.08997 * 109.47205 * 300.00054 * 1 2 3 30 30 H 1.08993 * 109.47170 * 60.00209 * 1 2 3 31 31 H 1.09007 * 109.46928 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99896 * 359.97438 * 6 4 2 33 33 H 1.08997 * 109.47140 * 299.99653 * 7 6 4 34 34 H 1.08995 * 109.47238 * 59.99873 * 7 6 4 35 35 H 1.09003 * 109.47198 * 300.00342 * 8 7 6 36 36 H 1.09000 * 109.47216 * 59.99534 * 8 7 6 37 37 H 1.07998 * 118.16914 * 0.86081 * 10 9 8 38 38 H 1.08991 * 109.67361 * 229.48233 * 11 10 9 39 39 H 1.08996 * 109.32761 * 109.31649 * 11 10 9 40 40 H 0.97005 * 119.99606 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.78082 * 178.61632 * 21 12 11 42 42 H 1.09002 * 109.77472 * 57.80806 * 21 12 11 43 43 H 1.09001 * 109.31534 * 281.28845 * 22 9 8 44 44 H 1.09001 * 109.31167 * 40.90907 * 22 9 8 45 45 H 1.08998 * 110.49235 * 357.22272 * 25 23 2 46 46 H 1.09005 * 110.48733 * 119.73950 * 25 23 2 47 47 H 1.09003 * 110.90358 * 97.38330 * 26 25 23 48 48 H 1.08998 * 110.90831 * 220.98862 * 26 25 23 49 49 H 1.08997 * 110.51925 * 278.38448 * 27 26 25 50 50 H 1.09004 * 110.63829 * 155.43159 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.6843 -0.2200 -4.9000 9 6 2.1867 -0.9304 -6.1304 10 6 1.4101 -1.8107 -6.6761 11 6 1.7805 -2.6058 -7.8969 12 7 3.0074 -2.0475 -8.4835 13 6 3.1402 -1.8842 -9.8366 14 1 3.8307 -1.1511 -10.2268 15 6 2.3873 -2.6607 -10.7068 16 7 1.7835 -3.7444 -10.2670 17 14 2.2310 -2.1675 -12.5016 18 1 3.5785 -2.1342 -13.1250 19 1 1.3799 -3.1543 -13.2138 20 1 1.6099 -0.8217 -12.5930 21 6 4.0880 -1.6706 -7.5556 22 6 3.5535 -0.5720 -6.6329 23 6 2.0400 -0.7212 1.2493 24 1 1.6950 -1.7552 1.2469 25 6 1.5315 -0.0021 2.5137 26 6 2.8209 0.3892 3.2759 27 6 3.8623 -0.5910 2.6723 28 8 3.4764 -0.6822 1.2841 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1488 0.5384 -2.5436 33 1 3.2847 -0.9414 -3.6509 34 1 1.8310 -1.9685 -3.6505 35 1 0.5943 -0.2199 -4.8996 36 1 2.0476 0.8077 -4.9004 37 1 0.4403 -1.9802 -6.2321 38 1 0.9724 -2.5558 -8.6265 39 1 1.9523 -3.6440 -7.6127 40 1 1.2577 -4.2872 -10.8751 41 1 4.9433 -1.2961 -8.1181 42 1 4.3851 -2.5367 -6.9643 43 1 3.5004 0.3671 -7.1837 44 1 4.2299 -0.4556 -5.7861 45 1 0.9628 0.8878 2.2440 46 1 0.9216 -0.6753 3.1163 47 1 3.0958 1.4237 3.0698 48 1 2.7045 0.2251 4.3472 49 1 3.7935 -1.5661 3.1546 50 1 4.8700 -0.1859 2.7649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161185052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:14 Heat of formation + Delta-G solvation = -58.184710 kcal Electronic energy + Delta-G solvation = -27160.154776 eV Core-core repulsion = 23380.663110 eV Total energy + Delta-G solvation = -3779.491666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.46969 -39.03982 -37.83455 -35.33740 -34.41575 -33.40377 -32.19840 -31.30180 -29.81193 -28.83257 -28.05410 -25.63240 -24.70604 -23.13220 -22.66329 -22.28881 -21.18751 -20.88821 -19.96501 -17.65357 -17.51513 -16.72412 -16.19054 -16.06007 -15.77856 -15.31202 -15.18055 -14.88977 -14.17399 -14.05814 -13.95189 -13.79041 -13.60272 -13.52046 -13.26659 -12.75758 -12.58243 -12.41322 -12.13364 -12.04594 -11.92900 -11.84419 -11.55415 -11.48939 -11.40054 -11.34969 -11.02381 -10.94078 -10.86492 -10.69729 -10.30663 -10.22378 -9.88351 -9.79457 -9.72701 -9.47863 -9.01679 -8.61735 -7.87627 -6.68566 -5.75087 -3.13700 2.66748 2.87247 3.22150 3.41124 3.46353 3.47685 3.55585 4.13385 4.27434 4.52007 4.52770 4.54368 4.61761 4.79763 4.90877 5.00582 5.12306 5.17068 5.21188 5.27915 5.31693 5.32708 5.38770 5.42985 5.43598 5.49644 5.61187 5.63043 5.70279 5.71267 5.78702 5.85873 6.07081 6.11548 6.21444 6.26524 6.44877 6.46684 6.60143 6.69864 6.83792 6.95382 7.28138 7.36750 7.44262 7.49733 7.78411 7.92715 8.25397 8.43091 9.24406 9.87357 10.46366 11.35282 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.001957 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.524873 B =14301.040702 C =14556.763057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.102 0.898 4 C 0.515 3.485 5 O -0.523 6.523 6 N -0.733 5.733 7 C 0.125 3.875 8 C -0.091 4.091 9 C -0.142 4.142 10 C -0.148 4.148 11 C 0.197 3.803 12 N -0.595 5.595 13 C -0.245 4.245 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.910 5.910 17 Si 0.905 3.095 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.143 3.857 22 C -0.091 4.091 23 C 0.097 3.903 24 H 0.074 0.926 25 C -0.154 4.154 26 C -0.156 4.156 27 C 0.042 3.958 28 O -0.356 6.356 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 11.044 27.029 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 H 0.120 0.880 4 C 0.300 3.700 5 O -0.398 6.398 6 N -0.385 5.385 7 C 0.002 3.998 8 C -0.129 4.129 9 C -0.142 4.142 10 C -0.167 4.167 11 C 0.072 3.928 12 N -0.319 5.319 13 C -0.374 4.374 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.016 3.984 22 C -0.130 4.130 23 C 0.039 3.961 24 H 0.092 0.908 25 C -0.192 4.192 26 C -0.194 4.194 27 C -0.035 4.035 28 O -0.274 6.274 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.169 10.169 26.786 28.826 hybrid contribution -0.633 0.641 -0.762 1.180 sum -3.802 10.810 26.024 28.435 Atomic orbital electron populations 1.21811 0.92091 1.03297 1.03093 1.21526 0.97402 1.01254 0.93091 0.88043 1.20405 0.80409 0.84869 0.84340 1.90747 1.36644 1.25916 1.86530 1.46114 1.54150 1.32269 1.05970 1.21407 0.99631 0.96333 0.82430 1.20902 1.00226 0.99088 0.92646 1.20231 0.97523 1.00047 0.96442 1.23112 0.97716 0.96841 0.99052 1.19697 0.90215 0.92831 0.90066 1.44124 1.11266 1.74369 1.02111 1.19144 1.22850 1.14353 0.81079 0.91467 1.24995 1.01657 0.95443 0.97952 1.70015 1.36647 1.14126 1.34718 0.86320 0.77692 0.77612 0.84857 1.20949 1.21656 1.21146 1.20958 0.91444 0.94316 0.91658 1.20763 0.93359 1.00405 0.98511 1.22477 0.82145 0.98831 0.92666 0.90790 1.23086 0.98367 1.01389 0.96332 1.23187 0.95184 1.00631 1.00386 1.23602 0.98900 0.98236 0.82728 1.89054 1.19554 1.94924 1.23875 0.91076 0.91410 0.91662 0.76988 0.91383 0.91446 0.91628 0.91549 0.89112 0.89153 0.94508 0.93607 0.92553 0.95850 0.91953 0.92851 0.90042 0.90410 0.90528 0.90261 0.92253 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.83 37.16 0.33 -0.52 16 2 C -0.11 -0.96 2.39 -91.77 -0.22 -1.18 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.51 6.56 7.02 -10.98 -0.08 6.48 16 5 O -0.52 -9.18 15.38 -10.94 -0.17 -9.34 16 6 N -0.73 -8.13 5.45 -60.29 -0.33 -8.46 16 7 C 0.12 1.71 5.66 -4.04 -0.02 1.68 16 8 C -0.09 -1.21 5.32 -27.88 -0.15 -1.36 16 9 C -0.14 -2.51 5.11 -100.99 -0.52 -3.02 16 10 C -0.15 -2.92 9.47 -35.78 -0.34 -3.26 16 11 C 0.20 4.84 5.23 -5.10 -0.03 4.81 16 12 N -0.60 -15.39 3.01 -173.68 -0.52 -15.91 16 13 C -0.24 -6.85 9.71 -15.06 -0.15 -7.00 16 14 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 15 C 0.00 -0.08 5.01 -17.43 -0.09 -0.16 16 16 N -0.91 -26.71 11.08 55.49 0.61 -26.10 16 17 Si 0.91 22.00 29.58 -169.99 -5.03 16.97 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.14 3.10 6.58 -3.53 -0.02 3.08 16 22 C -0.09 -1.66 5.94 -28.18 -0.17 -1.83 16 23 C 0.10 0.92 2.49 -26.16 -0.07 0.86 16 24 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 25 C -0.15 -0.92 6.02 -25.20 -0.15 -1.07 16 26 C -0.16 -0.90 7.17 -24.59 -0.18 -1.08 16 27 C 0.04 0.34 7.72 38.34 0.30 0.64 16 28 O -0.36 -4.34 10.26 -51.73 -0.53 -4.87 16 29 H 0.07 0.29 6.53 -51.93 -0.34 -0.05 16 30 H 0.07 0.33 7.56 -51.93 -0.39 -0.06 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.40 3.14 7.89 -40.82 -0.32 2.82 16 33 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 36 H 0.07 0.81 8.11 -51.93 -0.42 0.38 16 37 H 0.09 1.59 7.74 -52.49 -0.41 1.18 16 38 H 0.09 2.45 6.41 -51.93 -0.33 2.11 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 45 H 0.08 0.38 6.49 -51.93 -0.34 0.04 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -34.10 392.23 -10.42 -44.52 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.83 Total: 0.22 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.54 Total: -2.94 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.24 Total: -50.47 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.70 Total: -14.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.10 -10.42 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161185052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.663 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds