Wall clock time and date at job start Tue Mar 31 2020 13:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47114 * 2 1 4 4 C 1.50700 * 109.47372 * 239.99631 * 2 1 3 5 5 O 1.21280 * 120.00462 * 239.99898 * 4 2 1 6 6 N 1.34779 * 119.99811 * 60.00248 * 4 2 1 7 7 C 1.46499 * 120.00066 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47099 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47146 * 179.97438 * 8 7 6 10 10 C 1.29459 * 117.69481 * 94.73928 * 9 8 7 11 11 C 1.50320 * 123.65598 * 180.58518 * 10 9 8 12 12 N 1.47010 * 109.19984 * 349.50411 * 11 10 9 13 13 C 1.36937 * 121.36975 * 222.75873 * 12 11 10 14 14 H 1.08006 * 119.99671 * 155.95499 * 13 12 11 15 15 C 1.38814 * 120.00383 * 335.95422 * 13 12 11 16 16 N 1.31621 * 119.99629 * 344.53905 * 15 13 12 17 17 Si 1.86793 * 120.00111 * 164.53477 * 15 13 12 18 18 H 1.48504 * 109.47258 * 59.99856 * 17 15 13 19 19 H 1.48502 * 109.47360 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47197 * 300.00038 * 17 15 13 21 21 C 1.47335 * 117.25248 * 42.73773 * 12 11 10 22 22 C 1.49973 * 117.69492 * 274.99941 * 9 8 7 23 23 C 1.53005 * 109.47078 * 119.99845 * 2 1 3 24 24 H 1.09000 * 109.86900 * 61.00780 * 23 2 1 25 25 C 1.54096 * 109.87763 * 300.00022 * 23 2 1 26 26 C 1.54815 * 104.30440 * 238.47610 * 25 23 2 27 27 C 1.55228 * 101.98774 * 339.26425 * 26 25 23 28 28 O 1.43743 * 109.87993 * 182.16920 * 23 2 1 29 29 H 1.08997 * 109.47205 * 300.00054 * 1 2 3 30 30 H 1.08993 * 109.47170 * 60.00209 * 1 2 3 31 31 H 1.09007 * 109.46928 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99896 * 359.97438 * 6 4 2 33 33 H 1.08997 * 109.47140 * 299.99653 * 7 6 4 34 34 H 1.08995 * 109.47238 * 59.99873 * 7 6 4 35 35 H 1.09003 * 109.47198 * 300.00342 * 8 7 6 36 36 H 1.09000 * 109.47216 * 59.99534 * 8 7 6 37 37 H 1.07998 * 118.16914 * 0.86081 * 10 9 8 38 38 H 1.08991 * 109.67361 * 229.48233 * 11 10 9 39 39 H 1.08996 * 109.32761 * 109.31649 * 11 10 9 40 40 H 0.97005 * 119.99606 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.78082 * 178.61632 * 21 12 11 42 42 H 1.09002 * 109.77472 * 57.80806 * 21 12 11 43 43 H 1.09001 * 109.31534 * 281.28845 * 22 9 8 44 44 H 1.09001 * 109.31167 * 40.90907 * 22 9 8 45 45 H 1.08998 * 110.49235 * 357.22272 * 25 23 2 46 46 H 1.09005 * 110.48733 * 119.73950 * 25 23 2 47 47 H 1.09003 * 110.90358 * 97.38330 * 26 25 23 48 48 H 1.08998 * 110.90831 * 220.98862 * 26 25 23 49 49 H 1.08997 * 110.51925 * 278.38448 * 27 26 25 50 50 H 1.09004 * 110.63829 * 155.43159 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.6843 -0.2200 -4.9000 9 6 2.1867 -0.9304 -6.1304 10 6 1.4101 -1.8107 -6.6761 11 6 1.7805 -2.6058 -7.8969 12 7 3.0074 -2.0475 -8.4835 13 6 3.1402 -1.8842 -9.8366 14 1 3.8307 -1.1511 -10.2268 15 6 2.3873 -2.6607 -10.7068 16 7 1.7835 -3.7444 -10.2670 17 14 2.2310 -2.1675 -12.5016 18 1 3.5785 -2.1342 -13.1250 19 1 1.3799 -3.1543 -13.2138 20 1 1.6099 -0.8217 -12.5930 21 6 4.0880 -1.6706 -7.5556 22 6 3.5535 -0.5720 -6.6329 23 6 2.0400 -0.7212 1.2493 24 1 1.6950 -1.7552 1.2469 25 6 1.5315 -0.0021 2.5137 26 6 2.8209 0.3892 3.2759 27 6 3.8623 -0.5910 2.6723 28 8 3.4764 -0.6822 1.2841 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1488 0.5384 -2.5436 33 1 3.2847 -0.9414 -3.6509 34 1 1.8310 -1.9685 -3.6505 35 1 0.5943 -0.2199 -4.8996 36 1 2.0476 0.8077 -4.9004 37 1 0.4403 -1.9802 -6.2321 38 1 0.9724 -2.5558 -8.6265 39 1 1.9523 -3.6440 -7.6127 40 1 1.2577 -4.2872 -10.8751 41 1 4.9433 -1.2961 -8.1181 42 1 4.3851 -2.5367 -6.9643 43 1 3.5004 0.3671 -7.1837 44 1 4.2299 -0.4556 -5.7861 45 1 0.9628 0.8878 2.2440 46 1 0.9216 -0.6753 3.1163 47 1 3.0958 1.4237 3.0698 48 1 2.7045 0.2251 4.3472 49 1 3.7935 -1.5661 3.1546 50 1 4.8700 -0.1859 2.7649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161185052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:13 Heat of formation + Delta-G solvation = -79.792016 kcal Electronic energy + Delta-G solvation = -27161.091739 eV Core-core repulsion = 23380.663110 eV Total energy + Delta-G solvation = -3780.428630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29775 -39.93275 -39.39039 -36.71482 -35.29832 -34.83954 -33.12499 -32.73140 -31.50465 -30.23222 -28.76085 -27.18478 -25.65432 -24.63498 -24.00358 -23.18674 -22.47380 -21.91594 -20.80503 -19.46715 -18.42015 -17.69961 -17.32639 -17.07722 -16.83413 -16.76851 -16.27058 -16.07962 -15.70375 -15.42856 -15.22488 -14.96686 -14.70897 -14.47951 -14.32249 -14.11247 -13.87694 -13.39259 -13.30336 -13.21985 -12.92692 -12.85672 -12.76924 -12.60535 -12.57844 -12.40460 -12.32252 -12.20696 -12.08695 -11.93189 -11.88653 -11.68443 -11.48346 -11.24693 -10.70387 -10.68375 -10.60441 -10.06930 -9.49401 -8.76158 -7.88455 -5.31007 1.41239 1.46173 1.49180 1.56001 1.70875 2.24859 2.50777 2.95204 3.27891 3.58593 3.63806 3.68873 3.88427 3.95994 3.99321 4.07938 4.11870 4.14380 4.21456 4.29423 4.38887 4.46232 4.53600 4.57637 4.62232 4.68491 4.81355 4.82688 4.85508 4.88072 4.90266 4.95589 4.97161 5.02657 5.10359 5.15845 5.16957 5.22052 5.24778 5.30747 5.40255 5.47178 5.48995 5.59874 5.87012 6.06698 6.27712 6.32839 6.61530 7.12244 7.33646 7.82118 8.37580 9.20109 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.001957 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.524873 B =14301.040702 C =14556.763057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.122 0.878 4 C 0.507 3.493 5 O -0.580 6.580 6 N -0.717 5.717 7 C 0.133 3.867 8 C -0.076 4.076 9 C -0.121 4.121 10 C -0.175 4.175 11 C 0.207 3.793 12 N -0.615 5.615 13 C -0.259 4.259 14 H 0.072 0.928 15 C -0.058 4.058 16 N -0.942 5.942 17 Si 0.974 3.026 18 H -0.275 1.275 19 H -0.294 1.294 20 H -0.277 1.277 21 C 0.135 3.865 22 C -0.087 4.087 23 C 0.088 3.912 24 H 0.048 0.952 25 C -0.146 4.146 26 C -0.148 4.148 27 C 0.030 3.970 28 O -0.396 6.396 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.416 0.584 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.000 1.000 40 H 0.250 0.750 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.057 0.943 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 14.565 28.812 32.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.139 0.861 4 C 0.295 3.705 5 O -0.459 6.459 6 N -0.370 5.370 7 C 0.009 3.991 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.194 4.194 11 C 0.082 3.918 12 N -0.339 5.339 13 C -0.389 4.389 14 H 0.089 0.911 15 C -0.253 4.253 16 N -0.589 5.589 17 Si 0.801 3.199 18 H -0.201 1.201 19 H -0.220 1.220 20 H -0.203 1.203 21 C 0.010 3.990 22 C -0.126 4.126 23 C 0.030 3.970 24 H 0.066 0.934 25 C -0.183 4.183 26 C -0.185 4.185 27 C -0.046 4.046 28 O -0.316 6.316 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.254 0.746 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.018 0.982 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.122 0.878 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.117 0.883 49 H 0.075 0.925 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.183 13.747 28.592 31.999 hybrid contribution -0.194 -0.488 -1.269 1.373 sum -4.377 13.259 27.322 30.683 Atomic orbital electron populations 1.21852 0.89601 1.03179 1.05226 1.21583 0.99219 1.01237 0.90337 0.86064 1.21254 0.79345 0.84237 0.85699 1.90724 1.39272 1.28581 1.87360 1.45925 1.53815 1.32485 1.04824 1.21107 0.98597 0.95667 0.83706 1.20793 1.01442 0.99477 0.89685 1.20591 0.96490 0.98209 0.96898 1.22829 0.99857 0.98489 0.98234 1.19352 0.89039 0.92137 0.91313 1.44419 1.12693 1.74528 1.02247 1.19515 1.22749 1.14198 0.82445 0.91079 1.25837 1.01724 0.95477 1.02235 1.70202 1.37500 1.15238 1.35921 0.85243 0.77743 0.77204 0.79670 1.20060 1.22015 1.20287 1.21150 0.90940 0.95248 0.91703 1.20717 0.94172 0.98951 0.98737 1.22612 0.81276 0.98246 0.94900 0.93379 1.23080 0.98641 1.02046 0.94559 1.23174 0.93964 1.00129 1.01283 1.23813 1.00135 0.99133 0.81543 1.89013 1.21262 1.95111 1.26172 0.88403 0.89840 0.92927 0.74643 0.93056 0.93686 0.89573 0.88889 0.86821 0.92514 0.98200 0.94121 0.92189 0.96719 0.91124 0.89888 0.87817 0.89290 0.89847 0.88339 0.92450 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.83 71.98 0.64 -0.56 16 2 C -0.10 -1.56 2.39 -11.54 -0.03 -1.59 16 3 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.51 12.47 7.02 87.66 0.62 13.08 16 5 O -0.58 -20.93 15.38 12.75 0.20 -20.74 16 6 N -0.72 -14.28 5.45 -463.06 -2.52 -16.80 16 7 C 0.13 3.42 5.66 86.38 0.49 3.91 16 8 C -0.08 -1.78 5.32 29.85 0.16 -1.62 16 9 C -0.12 -4.07 5.11 -15.14 -0.08 -4.15 16 10 C -0.17 -6.92 9.47 27.10 0.26 -6.66 16 11 C 0.21 10.65 5.23 85.42 0.45 11.09 16 12 N -0.61 -32.60 3.01 -703.39 -2.12 -34.71 16 13 C -0.26 -14.77 9.71 84.03 0.82 -13.95 16 14 H 0.07 3.90 7.88 -2.91 -0.02 3.87 16 15 C -0.06 -3.35 5.01 84.86 0.43 -2.93 16 16 N -0.94 -57.55 11.08 21.65 0.24 -57.31 16 17 Si 0.97 45.92 29.58 68.60 2.03 47.95 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C 0.13 5.90 6.58 86.25 0.57 6.46 16 22 C -0.09 -3.01 5.94 29.66 0.18 -2.83 16 23 C 0.09 1.59 2.49 30.97 0.08 1.67 16 24 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 25 C -0.15 -1.33 6.02 31.58 0.19 -1.14 16 26 C -0.15 -1.34 7.17 31.98 0.23 -1.11 16 27 C 0.03 0.47 7.72 72.75 0.56 1.04 16 28 O -0.40 -9.72 10.26 -133.20 -1.37 -11.09 16 29 H 0.10 0.34 6.53 -2.39 -0.02 0.33 16 30 H 0.08 0.46 7.56 -2.39 -0.02 0.44 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.42 4.97 7.89 -92.71 -0.73 4.24 16 33 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.75 7.79 -2.39 -0.02 1.73 16 36 H 0.09 1.78 8.11 -2.39 -0.02 1.76 16 37 H 0.11 3.91 7.74 -2.91 -0.02 3.89 16 38 H 0.06 3.24 6.41 -2.39 -0.02 3.23 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 41 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 45 H 0.10 0.50 6.49 -2.39 -0.02 0.48 16 46 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -79.43 392.23 2.18 -77.25 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.18 Total: 14.75 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.54 Total: 0.70 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -4.40 Total: -108.83 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.17 Total: -31.83 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.43 2.18 -77.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161185052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.543 kcal (2) G-P(sol) polarization free energy of solvation -79.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds