Wall clock time and date at job start Tue Mar 31 2020 13:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 N 1.46500 * 109.47077 * 119.99610 * 2 1 3 5 5 C 1.34777 * 119.99947 * 155.00097 * 4 2 1 6 6 O 1.21287 * 119.99872 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00366 * 179.97438 * 5 4 2 8 8 N 1.46903 * 109.47482 * 180.02562 * 7 5 4 9 9 C 1.46953 * 110.99903 * 170.00245 * 8 7 5 10 10 C 1.53055 * 109.36332 * 183.18885 * 9 8 7 11 11 N 1.46952 * 109.36302 * 301.59692 * 10 9 8 12 12 C 1.46904 * 110.99966 * 183.18465 * 11 10 9 13 13 C 1.53005 * 109.46604 * 75.76174 * 12 11 10 14 14 H 1.08999 * 109.47050 * 304.79625 * 13 12 11 15 15 C 1.47200 * 109.47182 * 64.79976 * 13 12 11 16 16 N 9.23621 * 142.57970 * 255.78922 * 4 1 2 17 17 C 1.53002 * 109.46599 * 184.80251 * 13 12 11 18 18 C 1.50702 * 109.46839 * 175.00267 * 17 13 12 19 19 H 1.08004 * 119.99909 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00113 * 179.72402 * 18 17 13 21 21 N 1.31514 * 120.00215 * 180.27078 * 20 18 17 22 22 Si 1.86806 * 119.99842 * 0.26809 * 20 18 17 23 23 H 1.48506 * 109.46820 * 90.00390 * 22 20 18 24 24 H 1.48503 * 109.47075 * 210.00210 * 22 20 18 25 25 H 1.48500 * 109.47160 * 330.00516 * 22 20 18 26 26 C 1.46967 * 110.88063 * 59.32206 * 11 10 9 27 27 C 1.46952 * 110.99893 * 293.80029 * 8 7 5 28 28 H 1.08999 * 109.47022 * 299.99979 * 1 2 3 29 29 H 1.08998 * 109.46923 * 60.00123 * 1 2 3 30 30 H 1.08999 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47022 * 240.00021 * 2 1 3 32 32 H 1.08996 * 109.47321 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46810 * 300.00024 * 3 2 1 34 34 H 1.09007 * 109.47141 * 59.99509 * 3 2 1 35 35 H 0.96997 * 120.00346 * 335.00207 * 4 2 1 36 36 H 1.09003 * 109.46713 * 60.00155 * 7 5 4 37 37 H 1.09006 * 109.47170 * 300.00461 * 7 5 4 38 38 H 1.09004 * 109.49002 * 63.22391 * 9 8 7 39 39 H 1.09003 * 109.48749 * 303.15628 * 9 8 7 40 40 H 1.09001 * 109.48575 * 181.63000 * 10 9 8 41 41 H 1.09001 * 109.48594 * 61.56319 * 10 9 8 42 42 H 1.08993 * 109.46941 * 315.76282 * 12 11 10 43 43 H 1.09001 * 109.47274 * 195.75930 * 12 11 10 44 44 H 1.08994 * 109.47761 * 54.99617 * 17 13 12 45 45 H 1.09005 * 109.46866 * 294.99089 * 17 13 12 46 46 H 0.97001 * 120.00063 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.48585 * 60.64102 * 26 11 10 48 48 H 1.08994 * 109.48979 * 180.71062 * 26 11 10 49 49 H 1.08999 * 109.49403 * 296.78160 * 27 8 7 50 50 H 1.09007 * 109.48702 * 56.84185 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 3.2404 -1.2591 1.1945 6 8 3.9359 -1.1986 0.2027 7 6 3.7430 -1.9689 2.4251 8 7 5.0899 -2.4970 2.1701 9 6 5.7075 -2.9858 3.4107 10 6 7.1352 -3.4528 3.1171 11 7 7.1019 -4.5099 2.0968 12 6 8.4488 -5.0379 1.8417 13 6 8.8630 -5.9561 2.9934 14 1 8.7827 -5.4152 3.9363 15 6 7.9787 -7.1324 3.0256 16 7 7.2939 -8.0420 3.0487 17 6 10.3094 -6.4108 2.7880 18 6 10.7577 -7.2142 3.9817 19 1 10.0789 -7.3831 4.8046 20 6 12.0325 -7.7378 4.0209 21 7 12.4219 -8.4434 5.0602 22 14 13.2066 -7.4452 2.5977 23 1 13.9783 -6.1999 2.8407 24 1 14.1419 -8.5930 2.4836 25 1 12.4328 -7.3100 1.3374 26 6 6.4842 -4.0210 0.8561 27 6 5.0566 -3.5541 1.1498 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.4623 -0.7386 1.9895 36 1 3.0705 -2.7909 2.6705 37 1 3.7798 -1.2681 3.2592 38 1 5.1254 -3.8200 3.8026 39 1 5.7319 -2.1816 4.1461 40 1 7.5852 -3.8427 4.0301 41 1 7.7246 -2.6123 2.7509 42 1 9.1546 -4.2110 1.7644 43 1 8.4471 -5.6026 0.9094 44 1 10.9523 -5.5379 2.6753 45 1 10.3727 -7.0270 1.8910 46 1 13.3187 -8.8121 5.0875 47 1 7.0663 -3.1870 0.4642 48 1 6.4598 -4.8252 0.1207 49 1 4.4671 -4.3946 1.5159 50 1 4.6064 -3.1642 0.2368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073020521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:06 Heat of formation + Delta-G solvation = -4.597935 kcal Electronic energy + Delta-G solvation = -27180.403134 eV Core-core repulsion = 23435.527915 eV Total energy + Delta-G solvation = -3744.875218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38460 -39.09479 -36.97095 -36.16967 -34.93503 -33.50332 -32.20516 -31.70681 -30.91631 -29.11561 -27.69191 -26.93300 -24.80184 -23.62442 -22.39575 -21.68103 -21.41236 -20.76049 -19.78703 -17.43246 -16.92443 -16.71555 -16.69907 -16.02322 -15.82651 -14.95952 -14.87146 -14.75890 -14.59524 -14.40110 -14.32423 -13.84530 -13.48619 -13.44322 -13.19347 -12.94821 -12.80557 -12.60250 -12.43967 -12.27515 -12.17056 -12.03442 -11.82870 -11.63501 -11.43261 -11.27599 -11.25453 -11.17073 -11.10167 -10.93939 -10.61660 -10.33746 -9.98138 -9.87022 -9.68320 -9.44478 -9.29046 -8.59523 -8.52574 -8.18326 -6.08519 -4.08879 2.38110 2.69483 3.27878 3.36772 3.38157 3.71582 3.74663 3.81430 3.99158 4.30257 4.40515 4.52588 4.58211 4.75961 4.78373 4.84059 4.91477 4.97000 5.08119 5.09289 5.21779 5.24043 5.26502 5.30978 5.35076 5.39092 5.45871 5.49960 5.61757 5.63533 5.66360 5.79777 5.82446 5.89693 5.95349 5.96500 6.06258 6.16172 6.24772 6.35115 6.68591 6.83512 6.96001 7.13090 7.14710 7.19604 7.21813 7.66561 7.97326 8.43134 8.59342 8.95222 9.51568 11.04555 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.032108 B = 0.002094 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.834689 B =13371.102369 C =13593.042190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 C -0.164 4.164 4 N -0.733 5.733 5 C 0.515 3.485 6 O -0.518 6.518 7 C 0.036 3.964 8 N -0.522 5.522 9 C 0.058 3.942 10 C 0.055 3.945 11 N -0.544 5.544 12 C 0.060 3.940 13 C 0.023 3.977 14 H 0.104 0.896 15 C 0.255 3.745 16 N -0.476 5.476 17 C -0.006 4.006 18 C -0.526 4.526 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.062 3.938 27 C 0.054 3.946 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.025 0.975 46 H 0.264 0.736 47 H 0.045 0.955 48 H 0.077 0.923 49 H 0.036 0.964 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.701 21.408 -8.011 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.222 4.222 4 N -0.387 5.387 5 C 0.300 3.700 6 O -0.392 6.392 7 C -0.096 4.096 8 N -0.247 5.247 9 C -0.070 4.070 10 C -0.073 4.073 11 N -0.269 5.269 12 C -0.069 4.069 13 C 0.001 3.999 14 H 0.122 0.878 15 C -0.062 4.062 16 N -0.152 5.152 17 C -0.045 4.045 18 C -0.564 4.564 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.536 5.536 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.066 4.066 27 C -0.073 4.073 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.054 0.946 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.064 19.969 -8.642 31.708 hybrid contribution 0.699 0.385 -0.113 0.806 sum -22.365 20.354 -8.755 31.482 Atomic orbital electron populations 1.22079 0.94178 1.02631 1.02934 1.20908 0.93837 0.93074 0.88925 1.22184 1.02323 0.95724 1.01963 1.46140 1.18064 1.57624 1.16840 1.20630 0.80927 0.78541 0.89867 1.90690 1.55429 1.58326 1.34785 1.21943 0.91683 0.99670 0.96255 1.61873 1.17516 1.35638 1.09683 1.22213 0.95441 0.98606 0.90708 1.22208 0.95604 0.92934 0.96572 1.62175 1.21165 1.34159 1.09372 1.22246 0.88301 0.97655 0.98652 1.18948 0.93498 0.87727 0.99685 0.87808 1.28832 0.91744 0.93581 0.92001 1.81102 1.12631 1.11759 1.09751 1.19649 0.88743 0.97343 0.98763 1.21026 0.99192 1.32737 1.03441 0.90803 1.24992 0.98064 0.94433 0.95663 1.69907 1.19120 1.34999 1.29533 0.86822 0.81159 0.78036 0.83574 1.20055 1.21346 1.18839 1.22092 0.94314 0.98611 0.91620 1.22331 0.97129 0.91625 0.96238 0.92074 0.90929 0.91982 0.89491 0.91916 0.91727 0.92557 0.76795 0.91899 0.87874 0.93753 0.90226 0.89402 0.93593 0.92490 0.90380 0.94939 0.95695 0.92604 0.93713 0.90434 0.94553 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.38 37.16 0.35 -0.24 16 2 C 0.14 0.83 3.18 -67.93 -0.22 0.62 16 3 C -0.16 -0.99 9.48 37.16 0.35 -0.64 16 4 N -0.73 -4.48 5.08 -53.80 -0.27 -4.76 16 5 C 0.51 4.77 7.49 -10.99 -0.08 4.68 16 6 O -0.52 -6.89 14.00 5.55 0.08 -6.81 16 7 C 0.04 0.29 5.45 -4.98 -0.03 0.26 16 8 N -0.52 -5.69 4.45 -235.90 -1.05 -6.74 16 9 C 0.06 0.60 5.61 -3.77 -0.02 0.58 16 10 C 0.05 0.66 5.43 -3.77 -0.02 0.64 16 11 N -0.54 -7.43 4.34 -234.46 -1.02 -8.44 16 12 C 0.06 0.88 4.37 -3.82 -0.02 0.86 16 13 C 0.02 0.42 2.27 -93.40 -0.21 0.21 16 14 H 0.10 1.78 6.74 -51.93 -0.35 1.43 16 15 C 0.26 5.38 13.67 -20.67 -0.28 5.09 16 16 N -0.48 -10.97 18.56 42.26 0.78 -10.19 16 17 C -0.01 -0.13 3.49 -27.88 -0.10 -0.23 16 18 C -0.53 -14.26 9.15 -34.44 -0.32 -14.57 16 19 H 0.07 2.20 7.84 -52.48 -0.41 1.79 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 22 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.26 -5.95 6.54 56.52 0.37 -5.59 16 26 C 0.06 0.78 5.57 -3.76 -0.02 0.76 16 27 C 0.05 0.65 5.26 -3.77 -0.02 0.63 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.71 7.58 -51.93 -0.39 0.31 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.40 1.34 8.60 -40.82 -0.35 0.98 16 36 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.67 8.07 -51.93 -0.42 0.26 16 40 H 0.09 1.04 6.72 -51.93 -0.35 0.69 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.75 7.99 -51.93 -0.42 0.34 16 43 H 0.08 1.13 7.84 -51.93 -0.41 0.72 16 44 H 0.03 0.65 7.58 -51.93 -0.39 0.26 16 45 H 0.02 0.55 7.19 -51.93 -0.37 0.18 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 49 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.09 1.20 5.85 -51.93 -0.30 0.90 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -34.35 399.74 -8.89 -43.24 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.82 Total: -2.61 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.73 Total: 0.56 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.78 Total: -56.57 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: 0.08 Total: -6.81 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.35 -8.89 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073020521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.642 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds