Wall clock time and date at job start Tue Mar 31 2020 13:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46788 * 2 1 4 4 C 1.53000 * 109.47030 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47496 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47778 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47778 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47595 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00400 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99447 * 179.97438 * 10 9 8 13 13 C 1.40193 * 119.99510 * 179.97438 * 12 10 9 14 14 C 1.40403 * 125.97737 * 359.97438 * 13 12 10 15 15 C 1.35245 * 107.86997 * 179.71791 * 14 13 12 16 16 N 1.34965 * 107.85767 * 0.42139 * 15 14 13 17 17 C 1.46495 * 125.97869 * 179.83915 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71943 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31216 * 125.97104 * 179.97438 * 13 12 10 27 27 H 1.09001 * 109.47007 * 299.99808 * 1 2 3 28 28 H 1.08998 * 109.47263 * 59.99876 * 1 2 3 29 29 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46844 * 240.00301 * 2 1 3 31 31 H 1.08998 * 109.47263 * 120.00124 * 2 1 3 32 32 H 1.09001 * 109.47190 * 60.00304 * 3 2 1 33 33 H 1.08998 * 109.47319 * 300.00089 * 3 2 1 34 34 H 1.08988 * 109.47583 * 59.99902 * 4 3 2 35 35 H 1.09012 * 109.46784 * 299.99960 * 4 3 2 36 36 H 1.09001 * 109.47435 * 59.99538 * 5 4 3 37 37 H 1.08998 * 109.46817 * 299.99481 * 5 4 3 38 38 H 1.08998 * 109.47455 * 59.99385 * 6 5 4 39 39 H 1.09012 * 109.47202 * 300.00107 * 6 5 4 40 40 H 1.09001 * 109.47109 * 59.99793 * 7 6 5 41 41 H 1.08998 * 109.46861 * 299.99908 * 7 6 5 42 42 H 1.09001 * 109.46970 * 59.99708 * 8 7 6 43 43 H 1.08998 * 109.46850 * 299.99916 * 8 7 6 44 44 H 0.97000 * 119.99893 * 359.97438 * 9 8 7 45 45 H 0.96996 * 119.99831 * 359.97438 * 12 10 9 46 46 H 1.07997 * 126.06240 * 0.02562 * 14 13 12 47 47 H 1.07995 * 126.07276 * 180.26338 * 15 14 13 48 48 H 1.09000 * 109.47378 * 4.71603 * 17 16 15 49 49 H 1.09001 * 109.47153 * 244.71723 * 17 16 15 50 50 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 6 6.1199 4.3276 0.0000 8 6 7.6499 4.3277 0.0006 9 7 8.1382 5.7089 0.0013 10 6 9.4632 5.9552 0.0014 11 8 10.2534 5.0310 0.0014 12 7 9.9125 7.2260 0.0014 13 6 11.2908 7.4821 0.0021 14 6 12.3093 6.5157 0.0032 15 6 13.4963 7.1638 -0.0028 16 7 13.2440 8.4897 0.0019 17 6 14.2477 9.5568 0.0013 18 6 13.9983 10.4805 -1.1630 19 1 13.1747 10.2913 -1.8356 20 6 14.8221 11.5664 -1.3702 21 7 14.6077 12.3694 -2.3895 22 14 16.2470 11.8933 -0.2073 23 1 15.7909 12.7721 0.8995 24 1 16.7353 10.6069 0.3510 25 1 17.3474 12.5609 -0.9480 26 7 11.8545 8.6670 0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9290 -0.8907 35 1 3.9337 0.9286 0.8892 36 1 3.7169 3.3985 0.8904 37 1 3.7163 3.3994 -0.8896 38 1 5.9733 2.3717 -0.8901 39 1 5.9733 2.3709 0.8898 40 1 5.7566 4.8415 0.8900 41 1 5.7566 4.8414 -0.8900 42 1 8.0136 3.8138 -0.8891 43 1 8.0128 3.8141 0.8909 44 1 7.5078 6.4462 0.0008 45 1 9.2821 7.9632 0.0010 46 1 12.1696 5.4448 0.0034 47 1 14.4727 6.7024 -0.0076 48 1 15.2424 9.1200 -0.0880 49 1 14.1802 10.1195 0.9324 50 1 15.1897 13.1312 -2.5376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269940887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:15 Heat of formation + Delta-G solvation = 16.862697 kcal Electronic energy + Delta-G solvation = -25193.018872 eV Core-core repulsion = 21449.074257 eV Total energy + Delta-G solvation = -3743.944616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73777 -39.59175 -37.46076 -35.99621 -34.67939 -34.09115 -33.22732 -31.58624 -30.91013 -29.35002 -28.02119 -26.95785 -24.67099 -22.79988 -22.15388 -21.69685 -21.33044 -21.23774 -20.29490 -19.75742 -17.91198 -17.07118 -16.66302 -16.64953 -15.97669 -15.80214 -15.27024 -14.84099 -14.55136 -14.45728 -14.30914 -14.18869 -13.95128 -13.60393 -13.07616 -13.03516 -12.94434 -12.57247 -12.50365 -12.30903 -12.16185 -11.97185 -11.96921 -11.60742 -11.38967 -11.31138 -11.13429 -11.01094 -10.88457 -10.87028 -10.75471 -10.48725 -10.11382 -9.97541 -9.73025 -9.49948 -9.20860 -8.74945 -8.13396 -7.44493 -6.21815 -4.23922 2.39150 2.63143 3.09721 3.17529 3.22741 3.24850 3.54821 3.83268 4.13609 4.24378 4.32462 4.40565 4.51634 4.56561 4.62561 4.75172 4.80702 5.00510 5.06376 5.08927 5.11401 5.26345 5.31001 5.37133 5.40129 5.42582 5.47990 5.55867 5.61126 5.61459 5.65501 5.73706 5.76663 5.80804 5.87787 5.96250 5.98406 6.19627 6.30280 6.39496 6.50222 6.58392 6.75395 7.00174 7.30227 7.47305 7.85628 7.93561 8.36191 8.60907 8.62993 8.88383 9.33371 10.90955 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.048507 B = 0.001363 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.096724 B =20535.546322 C =20896.741088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.139 3.861 9 N -0.745 5.745 10 C 0.713 3.287 11 O -0.569 6.569 12 N -0.644 5.644 13 C 0.279 3.721 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.232 3.768 18 C -0.534 4.534 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.889 5.889 22 Si 0.874 3.126 23 H -0.272 1.272 24 H -0.265 1.265 25 H -0.281 1.281 26 N -0.301 5.301 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.407 0.593 46 H 0.163 0.837 47 H 0.168 0.832 48 H 0.053 0.947 49 H 0.037 0.963 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.599 -21.503 6.483 32.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.015 3.985 9 N -0.402 5.402 10 C 0.412 3.588 11 O -0.444 6.444 12 N -0.294 5.294 13 C 0.024 3.976 14 C -0.314 4.314 15 C -0.098 4.098 16 N -0.103 5.103 17 C 0.113 3.887 18 C -0.572 4.572 19 H 0.104 0.896 20 C -0.127 4.127 21 N -0.526 5.526 22 Si 0.700 3.300 23 H -0.197 1.197 24 H -0.189 1.189 25 H -0.206 1.206 26 N -0.132 5.132 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.231 0.769 45 H 0.242 0.758 46 H 0.180 0.820 47 H 0.186 0.814 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.906 -20.856 6.387 31.630 hybrid contribution 0.293 0.318 0.422 0.605 sum -22.613 -20.538 6.810 31.297 Atomic orbital electron populations 1.21786 0.95978 1.01567 1.01790 1.21545 0.95806 0.97037 1.01986 1.21636 0.95525 0.96687 1.02030 1.21620 0.95259 0.96865 1.02160 1.21594 0.95115 0.96839 1.02152 1.21502 0.95476 0.95804 1.02710 1.21817 0.94188 0.98100 1.02885 1.21222 0.93171 0.81519 1.02582 1.45045 1.04972 1.09253 1.80933 1.15638 0.82639 0.82528 0.78028 1.90862 1.54079 1.43059 1.56417 1.41397 1.04320 1.07042 1.76646 1.18803 0.83338 0.92762 1.02676 1.21538 0.89254 1.01052 1.19521 1.22544 1.00028 0.84644 1.02614 1.48581 1.03319 1.05395 1.52988 1.20035 0.84298 0.85130 0.99201 1.21129 1.16304 1.09161 1.10640 0.89644 1.24829 0.97300 0.95306 0.95296 1.69875 1.38643 1.15505 1.28562 0.86891 0.82483 0.79265 0.81324 1.19729 1.18937 1.20601 1.77386 0.89253 1.18292 1.28240 0.92789 0.92781 0.92848 0.92085 0.92099 0.92079 0.92065 0.91959 0.91989 0.91972 0.91939 0.91521 0.91548 0.91234 0.91180 0.91454 0.91497 0.76942 0.75790 0.82013 0.81437 0.92914 0.94525 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.13 -0.58 5.93 -26.73 -0.16 -0.74 16 3 C -0.12 -0.57 5.21 -26.73 -0.14 -0.71 16 4 C -0.12 -0.58 5.21 -26.73 -0.14 -0.72 16 5 C -0.12 -0.58 5.21 -26.74 -0.14 -0.72 16 6 C -0.12 -0.61 5.21 -26.74 -0.14 -0.75 16 7 C -0.13 -0.75 5.33 -26.74 -0.14 -0.89 16 8 C 0.14 1.20 5.67 -4.05 -0.02 1.18 16 9 N -0.75 -7.50 5.56 -65.23 -0.36 -7.86 16 10 C 0.71 10.66 8.53 -86.91 -0.74 9.92 16 11 O -0.57 -10.44 13.47 5.29 0.07 -10.37 16 12 N -0.64 -10.19 5.46 -15.50 -0.08 -10.28 16 13 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 14 C -0.28 -5.65 9.61 -39.83 -0.38 -6.03 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.81 16 16 N -0.32 -7.38 3.67 -62.56 -0.23 -7.61 16 17 C 0.23 5.57 5.33 -5.20 -0.03 5.54 16 18 C -0.53 -15.20 9.79 -34.44 -0.34 -15.54 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 20 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 22 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 N -0.30 -7.00 12.42 31.44 0.39 -6.60 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.31 8.14 -51.94 -0.42 -0.11 16 35 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.40 2.82 8.49 -40.82 -0.35 2.47 16 45 H 0.41 5.21 8.84 -40.82 -0.36 4.85 16 46 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 47 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 48 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 49 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 50 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -34.45 409.49 -10.47 -44.91 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.98 Total: 4.49 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.55 Total: -2.47 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.49 Total: -58.33 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.45 -10.47 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269940887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.778 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds