Wall clock time and date at job start Tue Mar 31 2020 13:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46788 * 2 1 4 4 C 1.53000 * 109.47030 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47496 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47778 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47778 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47595 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00400 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99447 * 179.97438 * 10 9 8 13 13 C 1.40193 * 119.99510 * 179.97438 * 12 10 9 14 14 C 1.40403 * 125.97737 * 359.97438 * 13 12 10 15 15 C 1.35245 * 107.86997 * 179.71791 * 14 13 12 16 16 N 1.34965 * 107.85767 * 0.42139 * 15 14 13 17 17 C 1.46495 * 125.97869 * 179.83915 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71943 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31216 * 125.97104 * 179.97438 * 13 12 10 27 27 H 1.09001 * 109.47007 * 299.99808 * 1 2 3 28 28 H 1.08998 * 109.47263 * 59.99876 * 1 2 3 29 29 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46844 * 240.00301 * 2 1 3 31 31 H 1.08998 * 109.47263 * 120.00124 * 2 1 3 32 32 H 1.09001 * 109.47190 * 60.00304 * 3 2 1 33 33 H 1.08998 * 109.47319 * 300.00089 * 3 2 1 34 34 H 1.08988 * 109.47583 * 59.99902 * 4 3 2 35 35 H 1.09012 * 109.46784 * 299.99960 * 4 3 2 36 36 H 1.09001 * 109.47435 * 59.99538 * 5 4 3 37 37 H 1.08998 * 109.46817 * 299.99481 * 5 4 3 38 38 H 1.08998 * 109.47455 * 59.99385 * 6 5 4 39 39 H 1.09012 * 109.47202 * 300.00107 * 6 5 4 40 40 H 1.09001 * 109.47109 * 59.99793 * 7 6 5 41 41 H 1.08998 * 109.46861 * 299.99908 * 7 6 5 42 42 H 1.09001 * 109.46970 * 59.99708 * 8 7 6 43 43 H 1.08998 * 109.46850 * 299.99916 * 8 7 6 44 44 H 0.97000 * 119.99893 * 359.97438 * 9 8 7 45 45 H 0.96996 * 119.99831 * 359.97438 * 12 10 9 46 46 H 1.07997 * 126.06240 * 0.02562 * 14 13 12 47 47 H 1.07995 * 126.07276 * 180.26338 * 15 14 13 48 48 H 1.09000 * 109.47378 * 4.71603 * 17 16 15 49 49 H 1.09001 * 109.47153 * 244.71723 * 17 16 15 50 50 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 6 6.1199 4.3276 0.0000 8 6 7.6499 4.3277 0.0006 9 7 8.1382 5.7089 0.0013 10 6 9.4632 5.9552 0.0014 11 8 10.2534 5.0310 0.0014 12 7 9.9125 7.2260 0.0014 13 6 11.2908 7.4821 0.0021 14 6 12.3093 6.5157 0.0032 15 6 13.4963 7.1638 -0.0028 16 7 13.2440 8.4897 0.0019 17 6 14.2477 9.5568 0.0013 18 6 13.9983 10.4805 -1.1630 19 1 13.1747 10.2913 -1.8356 20 6 14.8221 11.5664 -1.3702 21 7 14.6077 12.3694 -2.3895 22 14 16.2470 11.8933 -0.2073 23 1 15.7909 12.7721 0.8995 24 1 16.7353 10.6069 0.3510 25 1 17.3474 12.5609 -0.9480 26 7 11.8545 8.6670 0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9290 -0.8907 35 1 3.9337 0.9286 0.8892 36 1 3.7169 3.3985 0.8904 37 1 3.7163 3.3994 -0.8896 38 1 5.9733 2.3717 -0.8901 39 1 5.9733 2.3709 0.8898 40 1 5.7566 4.8415 0.8900 41 1 5.7566 4.8414 -0.8900 42 1 8.0136 3.8138 -0.8891 43 1 8.0128 3.8141 0.8909 44 1 7.5078 6.4462 0.0008 45 1 9.2821 7.9632 0.0010 46 1 12.1696 5.4448 0.0034 47 1 14.4727 6.7024 -0.0076 48 1 15.2424 9.1200 -0.0880 49 1 14.1802 10.1195 0.9324 50 1 15.1897 13.1312 -2.5376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269940887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:15 Heat of formation + Delta-G solvation = -4.614609 kcal Electronic energy + Delta-G solvation = -25193.950198 eV Core-core repulsion = 21449.074257 eV Total energy + Delta-G solvation = -3744.875941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22864 -40.88937 -37.96207 -36.73199 -36.08893 -35.22024 -34.69513 -33.09115 -31.79662 -30.94137 -29.11350 -28.27138 -25.39470 -24.44050 -23.09160 -22.57202 -22.01625 -21.76043 -21.60554 -21.13030 -19.16207 -19.03193 -18.20655 -17.24158 -17.19920 -16.76510 -16.34813 -16.11461 -15.86845 -15.53374 -15.34789 -14.82704 -14.78039 -14.71872 -14.43925 -14.40525 -13.87330 -13.79635 -13.57168 -13.43076 -13.02060 -12.93743 -12.66117 -12.53869 -12.45054 -12.16982 -12.02453 -11.82132 -11.80138 -11.70561 -11.65230 -11.47065 -11.41301 -11.27280 -11.23545 -11.05379 -10.86564 -10.20025 -9.72681 -9.03015 -8.36496 -6.46824 1.05367 1.14872 1.38008 1.40584 1.49879 1.70077 2.12039 2.29956 2.40846 2.96310 3.16216 3.72928 3.93801 4.00622 4.04312 4.13079 4.21256 4.23258 4.32079 4.36892 4.57780 4.61437 4.63583 4.63875 4.76662 4.81708 4.86348 4.90897 4.91489 4.94657 4.95522 5.03595 5.13526 5.15293 5.16113 5.18007 5.25016 5.26878 5.34959 5.38257 5.46774 5.52124 5.56295 5.59512 5.83300 5.93914 6.03058 6.42887 6.58628 6.74532 7.13300 7.16681 7.43100 8.80626 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.048507 B = 0.001363 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.096724 B =20535.546322 C =20896.741088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.120 4.120 8 C 0.137 3.863 9 N -0.723 5.723 10 C 0.709 3.291 11 O -0.603 6.603 12 N -0.638 5.638 13 C 0.283 3.717 14 C -0.294 4.294 15 C 0.061 3.939 16 N -0.345 5.345 17 C 0.239 3.761 18 C -0.548 4.548 19 H 0.026 0.974 20 C 0.016 3.984 21 N -0.943 5.943 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.229 1.229 25 H -0.278 1.278 26 N -0.350 5.350 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.414 0.586 45 H 0.420 0.580 46 H 0.167 0.833 47 H 0.211 0.789 48 H 0.083 0.917 49 H 0.045 0.955 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.304 -22.560 8.134 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.158 4.158 8 C 0.014 3.986 9 N -0.380 5.380 10 C 0.408 3.592 11 O -0.481 6.481 12 N -0.290 5.290 13 C 0.027 3.973 14 C -0.325 4.325 15 C -0.086 4.086 16 N -0.127 5.127 17 C 0.120 3.880 18 C -0.586 4.586 19 H 0.044 0.956 20 C -0.183 4.183 21 N -0.582 5.582 22 Si 0.776 3.224 23 H -0.191 1.191 24 H -0.152 1.152 25 H -0.203 1.203 26 N -0.181 5.181 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.251 0.749 45 H 0.257 0.743 46 H 0.184 0.816 47 H 0.227 0.773 48 H 0.101 0.899 49 H 0.062 0.938 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.696 -21.937 8.043 32.574 hybrid contribution 0.021 0.548 -0.170 0.574 sum -22.674 -21.390 7.873 32.150 Atomic orbital electron populations 1.21793 0.95775 1.01775 1.01835 1.21553 0.96016 0.96998 1.01902 1.21616 0.95417 0.96699 1.01969 1.21602 0.95322 0.96879 1.01987 1.21553 0.94595 0.96825 1.02341 1.21482 0.95818 0.95419 1.02598 1.21743 0.91622 0.98632 1.03809 1.21367 0.95152 0.80270 1.01817 1.44964 1.03377 1.10682 1.78982 1.15847 0.83872 0.81640 0.77800 1.90828 1.55436 1.43857 1.58012 1.41425 1.02999 1.08090 1.76501 1.19155 0.85244 0.92184 1.00709 1.21724 0.89514 1.01199 1.20086 1.23231 1.01825 0.83337 1.00254 1.48490 1.03144 1.06227 1.54849 1.19894 0.85884 0.85049 0.97209 1.21257 1.14868 1.10958 1.11527 0.95560 1.25909 1.00753 0.94473 0.97188 1.70051 1.40506 1.16460 1.31159 0.85624 0.77697 0.80657 0.78438 1.19050 1.15192 1.20336 1.77304 0.90022 1.20015 1.30725 0.92708 0.92770 0.92592 0.92217 0.92143 0.92062 0.92161 0.92207 0.92101 0.91676 0.91819 0.91797 0.91609 0.90148 0.90374 0.92438 0.92142 0.74916 0.74271 0.81592 0.77282 0.89891 0.93754 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.13 -1.07 5.93 30.60 0.18 -0.89 16 3 C -0.12 -1.01 5.21 30.59 0.16 -0.85 16 4 C -0.12 -1.03 5.21 30.59 0.16 -0.87 16 5 C -0.12 -0.93 5.21 30.59 0.16 -0.77 16 6 C -0.12 -1.03 5.21 30.59 0.16 -0.87 16 7 C -0.12 -1.12 5.33 30.59 0.16 -0.95 16 8 C 0.14 2.19 5.67 86.38 0.49 2.68 16 9 N -0.72 -13.51 5.56 -478.54 -2.66 -16.17 16 10 C 0.71 20.70 8.53 179.05 1.53 22.23 16 11 O -0.60 -21.91 13.47 -4.00 -0.05 -21.96 16 12 N -0.64 -20.00 5.46 -321.22 -1.75 -21.75 16 13 C 0.28 11.56 8.11 133.31 1.08 12.65 16 14 C -0.29 -11.57 9.61 22.11 0.21 -11.35 16 15 C 0.06 2.32 11.44 83.52 0.96 3.28 16 16 N -0.35 -15.69 3.67 -351.85 -1.29 -16.98 16 17 C 0.24 11.17 5.33 85.63 0.46 11.62 16 18 C -0.55 -31.88 9.79 25.60 0.25 -31.63 16 19 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 20 C 0.02 0.88 5.47 84.65 0.46 1.34 16 21 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 22 Si 0.96 40.81 27.47 68.60 1.88 42.70 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.23 -8.45 6.54 99.48 0.65 -7.80 16 25 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 26 N -0.35 -16.51 12.42 -54.43 -0.68 -17.18 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.41 5.03 8.49 -92.71 -0.79 4.24 16 45 H 0.42 10.58 8.84 -92.71 -0.82 9.76 16 46 H 0.17 6.42 5.91 -2.91 -0.02 6.40 16 47 H 0.21 5.82 8.06 -2.91 -0.02 5.80 16 48 H 0.08 3.36 7.12 -2.39 -0.02 3.34 16 49 H 0.04 1.99 7.57 -2.39 -0.02 1.98 16 50 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -77.86 409.49 2.14 -75.72 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.74 Total: 28.58 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 7.13 Total: 5.11 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -6.08 Total: -130.15 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.70 kcal Total: -77.86 2.14 -75.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269940887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.102 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds