Wall clock time and date at job start Tue Mar 31 2020 13:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47487 * 2 1 4 4 H 1.09002 * 110.35223 * 307.14377 * 3 2 1 5 5 C 1.54596 * 110.30883 * 69.28382 * 3 2 1 6 6 C 1.54935 * 102.91948 * 140.87565 * 5 3 2 7 7 N 1.48532 * 103.22734 * 322.58621 * 6 5 3 8 8 C 1.38589 * 110.99856 * 159.72190 * 7 6 5 9 9 N 1.31214 * 126.47321 * 242.62758 * 8 7 6 10 10 N 1.28527 * 109.85861 * 179.74117 * 9 8 7 11 11 C 1.30288 * 110.05517 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.34930 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.46861 * 89.97908 * 12 11 10 14 14 C 1.50706 * 109.46859 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99741 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00209 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46831 * 59.99611 * 18 16 14 20 20 H 1.48492 * 109.47352 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46978 * 300.00123 * 18 16 14 22 22 N 1.36451 * 126.47197 * 62.32043 * 8 7 6 23 23 C 1.46506 * 127.13577 * 0.23829 * 22 8 7 24 24 C 1.52997 * 109.47327 * 90.00212 * 23 22 8 25 25 O 1.42895 * 109.47165 * 179.97438 * 24 23 22 26 26 C 1.42899 * 114.00052 * 180.02562 * 25 24 23 27 27 C 1.47900 * 105.82238 * 39.20647 * 7 6 5 28 28 H 1.08998 * 109.47402 * 59.99725 * 1 2 3 29 29 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46897 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.46664 * 240.00082 * 2 1 3 32 32 H 1.08998 * 109.47402 * 120.00275 * 2 1 3 33 33 H 1.08999 * 110.72162 * 259.23449 * 5 3 2 34 34 H 1.09003 * 110.72036 * 22.51971 * 5 3 2 35 35 H 1.09006 * 110.66497 * 204.15095 * 6 5 3 36 36 H 1.08999 * 110.66952 * 81.02355 * 6 5 3 37 37 H 1.08998 * 109.47064 * 209.98253 * 12 11 10 38 38 H 1.09000 * 109.46741 * 329.97784 * 12 11 10 39 39 H 1.08998 * 109.47563 * 300.00039 * 13 12 11 40 40 H 1.09000 * 109.47543 * 60.00368 * 13 12 11 41 41 H 0.97003 * 119.99853 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.46895 * 210.00549 * 23 22 8 43 43 H 1.08998 * 109.46920 * 329.99582 * 23 22 8 44 44 H 1.08994 * 109.47200 * 299.99980 * 24 23 22 45 45 H 1.09005 * 109.46856 * 60.00045 * 24 23 22 46 46 H 1.09000 * 109.47094 * 300.00223 * 26 25 24 47 47 H 1.09006 * 109.47159 * 59.99759 * 26 25 24 48 48 H 1.08997 * 109.47226 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.91417 * 94.01892 * 27 7 6 50 50 H 1.08993 * 109.92156 * 215.31453 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5847 2.0056 -0.8146 5 6 1.7354 2.1194 1.3561 6 6 3.0093 2.9618 1.6167 7 7 4.1011 2.0939 1.1057 8 6 5.2407 2.8356 0.8373 9 7 5.8125 2.9909 -0.3334 10 7 6.8463 3.7457 -0.2177 11 6 6.9939 4.1141 1.0232 12 6 8.0839 5.0007 1.5682 13 6 7.6326 6.4612 1.5051 14 6 8.7229 7.3478 2.0495 15 1 9.6451 6.9131 2.4053 16 6 8.5423 8.7140 2.0943 17 7 7.4190 9.2434 1.6615 18 14 9.8934 9.8130 2.7697 19 1 11.1245 9.6401 1.9573 20 1 9.4555 11.2305 2.7084 21 1 10.1747 9.4419 4.1797 22 7 5.9766 3.5470 1.7396 23 6 5.7277 3.6771 3.1775 24 6 6.4607 2.5615 3.9250 25 8 6.2185 2.6888 5.3275 26 6 6.8621 1.6901 6.1215 27 6 3.5746 1.4667 -0.1259 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8578 2.7611 1.2783 34 1 1.6003 1.3723 2.1383 35 1 3.1346 3.1499 2.6831 36 1 2.9711 3.8990 1.0616 37 1 8.2901 4.7285 2.6033 38 1 8.9876 4.8735 0.9721 39 1 7.4263 6.7334 0.4700 40 1 6.7289 6.5883 2.1012 41 1 7.2922 10.2046 1.6926 42 1 6.0906 4.6453 3.5229 43 1 4.6575 3.6009 3.3693 44 1 6.0979 1.5935 3.5797 45 1 7.5311 2.6379 3.7331 46 1 6.5077 0.7038 5.8221 47 1 7.9406 1.7485 5.9748 48 1 6.6293 1.8564 7.1733 49 1 3.8665 2.0548 -0.9960 50 1 3.9558 0.4497 -0.2169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122276607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:23 Heat of formation + Delta-G solvation = 26.235568 kcal Electronic energy + Delta-G solvation = -28145.555362 eV Core-core repulsion = 24402.017184 eV Total energy + Delta-G solvation = -3743.538177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.69633 -39.40473 -38.15398 -35.19883 -34.91408 -33.78579 -31.86324 -30.67477 -29.75947 -28.83834 -27.96131 -26.49058 -25.27947 -23.72512 -23.47067 -22.37645 -21.77353 -20.73312 -20.21733 -19.70037 -17.51004 -16.73906 -16.52811 -16.17634 -16.08868 -15.65334 -15.40033 -14.96775 -14.69308 -14.52879 -14.27689 -13.89514 -13.74808 -13.26232 -13.08246 -13.07105 -12.74477 -12.47018 -12.27270 -12.20212 -12.13502 -11.74412 -11.55087 -11.40304 -11.31212 -11.18523 -10.99817 -10.97497 -10.80029 -10.72455 -10.63879 -10.34994 -10.07470 -9.95292 -9.90689 -9.76140 -9.32174 -9.21508 -8.40924 -7.98131 -6.05448 -4.09641 2.04215 2.34957 3.22121 3.31266 3.36063 3.38305 3.55617 3.93863 4.29083 4.30025 4.41271 4.47026 4.59650 4.80164 4.91334 4.98933 5.01396 5.07717 5.11370 5.15791 5.18854 5.21742 5.27788 5.30633 5.32758 5.34619 5.40579 5.47390 5.49862 5.59727 5.62632 5.72383 5.75333 5.77660 5.82068 5.85469 6.00878 6.10360 6.20792 6.31839 6.43679 6.55972 6.65896 6.87510 6.91007 7.38824 7.54333 7.67833 7.91527 8.29018 8.95978 9.16917 9.54955 11.05642 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003188 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.393915 B = 8779.509782 C = 9919.071153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.100 4.100 4 H 0.081 0.919 5 C -0.114 4.114 6 C 0.031 3.969 7 N -0.433 5.433 8 C 0.330 3.670 9 N -0.322 5.322 10 N -0.293 5.293 11 C 0.216 3.784 12 C -0.032 4.032 13 C 0.033 3.967 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.475 5.475 23 C 0.110 3.890 24 C 0.053 3.947 25 O -0.386 6.386 26 C 0.034 3.966 27 C 0.052 3.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.026 0.974 40 H 0.014 0.986 41 H 0.262 0.738 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.044 0.956 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.061 -19.055 4.472 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.119 4.119 4 H 0.099 0.901 5 C -0.152 4.152 6 C -0.096 4.096 7 N -0.157 5.157 8 C -0.026 4.026 9 N -0.165 5.165 10 N -0.131 5.131 11 C -0.052 4.052 12 C -0.072 4.072 13 C -0.005 4.005 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.172 5.172 23 C -0.014 4.014 24 C -0.025 4.025 25 O -0.304 6.304 26 C -0.062 4.062 27 C -0.075 4.075 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.863 -19.279 3.423 22.894 hybrid contribution 0.446 1.098 1.206 1.691 sum -11.417 -18.181 4.629 21.962 Atomic orbital electron populations 1.21786 0.95786 1.01529 1.01904 1.21586 0.95810 0.95307 1.02377 1.22115 0.94579 0.97130 0.98085 0.90087 1.22575 0.96411 0.98932 0.97288 1.23475 0.89570 0.95321 1.01251 1.61559 1.00878 1.24812 1.28498 1.22669 0.96587 0.96909 0.86465 1.74453 1.07130 1.17460 1.17501 1.74013 1.12432 1.11654 1.14998 1.25613 0.92774 0.98356 0.88409 1.20470 0.92163 0.95153 0.99437 1.19062 0.96730 0.86554 0.98203 1.21093 1.01685 0.91474 1.42028 0.92340 1.25004 0.95659 0.98220 0.95317 1.69960 1.24752 1.11863 1.46523 0.86615 0.82174 0.79472 0.79511 1.20081 1.21277 1.20181 1.46007 1.23029 1.39400 1.08729 1.21639 1.02534 1.01194 0.75993 1.22708 0.99825 0.98330 0.81649 1.87807 1.73246 1.52777 1.16548 1.22760 0.96856 0.90892 0.95712 1.22949 0.93332 1.00720 0.90515 0.92768 0.92836 0.92604 0.91735 0.91502 0.90360 0.90157 0.89240 0.92303 0.91250 0.89188 0.95610 0.96786 0.92803 0.86853 0.88180 0.92349 0.92355 0.94038 0.93765 0.89292 0.90339 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.78 37.15 0.36 -0.59 16 2 C -0.11 -0.81 5.09 -26.73 -0.14 -0.95 16 3 C -0.10 -0.87 3.00 -89.26 -0.27 -1.14 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.11 -0.95 5.87 -24.87 -0.15 -1.10 16 6 C 0.03 0.35 5.92 -1.90 -0.01 0.34 16 7 N -0.43 -5.77 5.32 -170.55 -0.91 -6.68 16 8 C 0.33 5.63 7.04 -318.87 -2.24 3.38 16 9 N -0.32 -6.43 10.70 30.32 0.32 -6.10 16 10 N -0.29 -6.41 12.18 32.99 0.40 -6.01 16 11 C 0.22 4.33 7.32 -154.02 -1.13 3.20 16 12 C -0.03 -0.66 5.36 -27.88 -0.15 -0.81 16 13 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 14 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 N -0.48 -8.13 2.81 -114.08 -0.32 -8.45 16 23 C 0.11 1.56 6.17 -4.04 -0.02 1.54 16 24 C 0.05 0.67 6.26 37.16 0.23 0.90 16 25 O -0.39 -4.85 10.70 -35.23 -0.38 -5.23 16 26 C 0.03 0.31 11.01 101.05 1.11 1.43 16 27 C 0.05 0.61 6.14 -2.76 -0.02 0.59 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.34 7.58 -51.93 -0.39 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 7.99 -51.93 -0.42 0.08 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.62 7.76 -51.93 -0.40 0.21 16 35 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16 36 H 0.06 0.76 7.99 -51.93 -0.42 0.35 16 37 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 38 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 42 H 0.11 1.75 7.88 -51.92 -0.41 1.34 16 43 H 0.10 1.25 5.38 -51.93 -0.28 0.97 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 1.09 6.84 -51.93 -0.36 0.74 16 50 H 0.09 0.98 7.68 -51.93 -0.40 0.58 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -32.58 399.27 -10.94 -43.53 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.83 Total: -1.92 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.96 Total: -5.61 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.23 Total: -53.04 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.38 Total: -5.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.58 -10.94 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122276607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.761 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds