Wall clock time and date at job start Tue Mar 31 2020 13:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47487 * 2 1 4 4 H 1.09002 * 110.35223 * 307.14377 * 3 2 1 5 5 C 1.54596 * 110.30883 * 69.28382 * 3 2 1 6 6 C 1.54935 * 102.91948 * 140.87565 * 5 3 2 7 7 N 1.48532 * 103.22734 * 322.58621 * 6 5 3 8 8 C 1.38589 * 110.99856 * 159.72190 * 7 6 5 9 9 N 1.31214 * 126.47321 * 242.62758 * 8 7 6 10 10 N 1.28527 * 109.85861 * 179.74117 * 9 8 7 11 11 C 1.30288 * 110.05517 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.34930 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.46861 * 89.97908 * 12 11 10 14 14 C 1.50706 * 109.46859 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99741 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00209 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46831 * 59.99611 * 18 16 14 20 20 H 1.48492 * 109.47352 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46978 * 300.00123 * 18 16 14 22 22 N 1.36451 * 126.47197 * 62.32043 * 8 7 6 23 23 C 1.46506 * 127.13577 * 0.23829 * 22 8 7 24 24 C 1.52997 * 109.47327 * 90.00212 * 23 22 8 25 25 O 1.42895 * 109.47165 * 179.97438 * 24 23 22 26 26 C 1.42899 * 114.00052 * 180.02562 * 25 24 23 27 27 C 1.47900 * 105.82238 * 39.20647 * 7 6 5 28 28 H 1.08998 * 109.47402 * 59.99725 * 1 2 3 29 29 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46897 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.46664 * 240.00082 * 2 1 3 32 32 H 1.08998 * 109.47402 * 120.00275 * 2 1 3 33 33 H 1.08999 * 110.72162 * 259.23449 * 5 3 2 34 34 H 1.09003 * 110.72036 * 22.51971 * 5 3 2 35 35 H 1.09006 * 110.66497 * 204.15095 * 6 5 3 36 36 H 1.08999 * 110.66952 * 81.02355 * 6 5 3 37 37 H 1.08998 * 109.47064 * 209.98253 * 12 11 10 38 38 H 1.09000 * 109.46741 * 329.97784 * 12 11 10 39 39 H 1.08998 * 109.47563 * 300.00039 * 13 12 11 40 40 H 1.09000 * 109.47543 * 60.00368 * 13 12 11 41 41 H 0.97003 * 119.99853 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.46895 * 210.00549 * 23 22 8 43 43 H 1.08998 * 109.46920 * 329.99582 * 23 22 8 44 44 H 1.08994 * 109.47200 * 299.99980 * 24 23 22 45 45 H 1.09005 * 109.46856 * 60.00045 * 24 23 22 46 46 H 1.09000 * 109.47094 * 300.00223 * 26 25 24 47 47 H 1.09006 * 109.47159 * 59.99759 * 26 25 24 48 48 H 1.08997 * 109.47226 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.91417 * 94.01892 * 27 7 6 50 50 H 1.08993 * 109.92156 * 215.31453 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5847 2.0056 -0.8146 5 6 1.7354 2.1194 1.3561 6 6 3.0093 2.9618 1.6167 7 7 4.1011 2.0939 1.1057 8 6 5.2407 2.8356 0.8373 9 7 5.8125 2.9909 -0.3334 10 7 6.8463 3.7457 -0.2177 11 6 6.9939 4.1141 1.0232 12 6 8.0839 5.0007 1.5682 13 6 7.6326 6.4612 1.5051 14 6 8.7229 7.3478 2.0495 15 1 9.6451 6.9131 2.4053 16 6 8.5423 8.7140 2.0943 17 7 7.4190 9.2434 1.6615 18 14 9.8934 9.8130 2.7697 19 1 11.1245 9.6401 1.9573 20 1 9.4555 11.2305 2.7084 21 1 10.1747 9.4419 4.1797 22 7 5.9766 3.5470 1.7396 23 6 5.7277 3.6771 3.1775 24 6 6.4607 2.5615 3.9250 25 8 6.2185 2.6888 5.3275 26 6 6.8621 1.6901 6.1215 27 6 3.5746 1.4667 -0.1259 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8578 2.7611 1.2783 34 1 1.6003 1.3723 2.1383 35 1 3.1346 3.1499 2.6831 36 1 2.9711 3.8990 1.0616 37 1 8.2901 4.7285 2.6033 38 1 8.9876 4.8735 0.9721 39 1 7.4263 6.7334 0.4700 40 1 6.7289 6.5883 2.1012 41 1 7.2922 10.2046 1.6926 42 1 6.0906 4.6453 3.5229 43 1 4.6575 3.6009 3.3693 44 1 6.0979 1.5935 3.5797 45 1 7.5311 2.6379 3.7331 46 1 6.5077 0.7038 5.8221 47 1 7.9406 1.7485 5.9748 48 1 6.6293 1.8564 7.1733 49 1 3.8665 2.0548 -0.9960 50 1 3.9558 0.4497 -0.2169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122276607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:22 Heat of formation + Delta-G solvation = 8.542344 kcal Electronic energy + Delta-G solvation = -28146.322597 eV Core-core repulsion = 24402.017184 eV Total energy + Delta-G solvation = -3744.305413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.14630 -40.36254 -39.11366 -36.56798 -36.16133 -35.32044 -33.62669 -31.76747 -30.93321 -29.82611 -29.32150 -27.35949 -27.11222 -24.87883 -24.35804 -23.52931 -23.31941 -21.87902 -21.57023 -20.75481 -18.73382 -18.50771 -17.81480 -17.42820 -17.16122 -16.66847 -16.54603 -16.45316 -15.92523 -15.49039 -15.28538 -15.11668 -14.97677 -14.62229 -14.35447 -14.24732 -13.85573 -13.63860 -13.47856 -13.31624 -12.96625 -12.89207 -12.84236 -12.71151 -12.56864 -12.52423 -12.32856 -12.09505 -12.07846 -11.85110 -11.75791 -11.59938 -11.43763 -11.38843 -11.34371 -11.23370 -10.80260 -10.69879 -10.56750 -9.39343 -8.20892 -6.33347 0.63616 1.04540 1.42805 1.46094 1.53546 1.70166 2.41673 2.48752 2.86267 3.13351 3.33302 3.44928 3.46371 3.54246 3.76399 3.81554 3.93852 4.04784 4.11079 4.16916 4.25328 4.32133 4.39688 4.44637 4.49337 4.52705 4.54638 4.61274 4.64869 4.71210 4.77021 4.79142 4.82906 4.83935 4.89513 4.94867 5.02725 5.05775 5.20431 5.25022 5.31503 5.40323 5.43665 5.49448 5.56000 5.60677 5.76994 5.98465 6.08053 6.15418 6.81853 7.36636 7.66187 8.91039 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003188 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.393915 B = 8779.509782 C = 9919.071153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.093 4.093 4 H 0.082 0.918 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.428 5.428 8 C 0.348 3.652 9 N -0.354 5.354 10 N -0.326 5.326 11 C 0.202 3.798 12 C -0.015 4.015 13 C 0.045 3.955 14 C -0.540 4.540 15 H 0.072 0.928 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.261 1.261 22 N -0.471 5.471 23 C 0.107 3.893 24 C 0.065 3.935 25 O -0.402 6.402 26 C 0.027 3.973 27 C 0.049 3.951 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.091 0.909 39 H -0.016 1.016 40 H -0.006 1.006 41 H 0.264 0.736 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.053 0.947 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 -20.487 6.480 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.100 0.900 5 C -0.141 4.141 6 C -0.100 4.100 7 N -0.152 5.152 8 C -0.009 4.009 9 N -0.197 5.197 10 N -0.164 5.164 11 C -0.067 4.067 12 C -0.055 4.055 13 C 0.006 3.994 14 C -0.578 4.578 15 H 0.090 0.910 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.186 1.186 22 N -0.167 5.167 23 C -0.015 4.015 24 C -0.013 4.013 25 O -0.320 6.320 26 C -0.069 4.069 27 C -0.078 4.078 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.002 0.998 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.124 0.876 49 H 0.071 0.929 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.451 -20.738 5.449 24.795 hybrid contribution 0.533 1.469 0.596 1.673 sum -11.918 -19.269 6.045 23.449 Atomic orbital electron populations 1.21769 0.94754 1.02117 1.02166 1.21544 0.96587 0.93877 1.02567 1.22095 0.92033 0.98539 0.98506 0.89959 1.22601 0.95252 0.98930 0.97288 1.23611 0.90233 0.94758 1.01404 1.61731 1.00350 1.24174 1.28973 1.23067 0.96866 0.95371 0.85634 1.74383 1.07540 1.18688 1.19128 1.73909 1.13663 1.12655 1.16198 1.25337 0.93668 0.99181 0.88519 1.20161 0.92283 0.92176 1.00892 1.18819 0.95808 0.89749 0.94993 1.21551 1.02436 0.92144 1.41694 0.90977 1.25988 0.98107 1.00009 0.95533 1.70113 1.27081 1.12237 1.47957 0.85462 0.78925 0.77034 0.79416 1.19193 1.21224 1.18597 1.46060 1.22113 1.38787 1.09763 1.21818 1.03955 1.01326 0.74433 1.22509 0.99158 0.97631 0.82043 1.87782 1.73829 1.54197 1.16240 1.23001 0.96982 0.90797 0.96136 1.23047 0.95661 1.00198 0.88876 0.92826 0.92132 0.92044 0.91710 0.91238 0.88572 0.88542 0.88104 0.94356 0.88987 0.89048 0.99753 0.98806 0.92765 0.88245 0.86344 0.91680 0.92858 0.92696 0.93425 0.87563 0.92896 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.78 71.98 0.70 -0.77 16 2 C -0.11 -1.30 5.09 30.59 0.16 -1.15 16 3 C -0.09 -1.45 3.00 -9.91 -0.03 -1.48 16 4 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.10 -1.46 5.87 31.80 0.19 -1.27 16 6 C 0.03 0.56 5.92 86.65 0.51 1.07 16 7 N -0.43 -11.06 5.32 -693.51 -3.69 -14.75 16 8 C 0.35 11.98 7.04 260.11 1.83 13.81 16 9 N -0.35 -14.64 10.70 -58.00 -0.62 -15.26 16 10 N -0.33 -14.85 12.18 -49.54 -0.60 -15.45 16 11 C 0.20 8.35 7.32 137.64 1.01 9.36 16 12 C -0.02 -0.65 5.36 29.85 0.16 -0.49 16 13 C 0.04 2.36 4.95 29.85 0.15 2.51 16 14 C -0.54 -29.93 9.11 25.60 0.23 -29.69 16 15 H 0.07 3.71 7.74 -2.92 -0.02 3.69 16 16 C 0.00 0.10 5.46 84.65 0.46 0.56 16 17 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 18 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 N -0.47 -16.31 2.81 -514.83 -1.45 -17.76 16 23 C 0.11 2.99 6.17 86.38 0.53 3.53 16 24 C 0.06 1.56 6.26 71.98 0.45 2.01 16 25 O -0.40 -9.39 10.70 -148.98 -1.59 -10.98 16 26 C 0.03 0.43 11.01 113.37 1.25 1.68 16 27 C 0.05 1.12 6.14 86.45 0.53 1.65 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.54 7.58 -2.38 -0.02 0.52 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.83 7.99 -2.39 -0.02 0.81 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.12 7.76 -2.39 -0.02 1.10 16 35 H 0.10 1.91 6.01 -2.38 -0.01 1.89 16 36 H 0.04 0.99 7.99 -2.39 -0.02 0.97 16 37 H 0.09 3.40 7.92 -2.39 -0.02 3.38 16 38 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.10 3.09 7.88 -2.38 -0.02 3.07 16 43 H 0.12 2.83 5.38 -2.39 -0.01 2.82 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.05 1.51 6.84 -2.39 -0.02 1.50 16 50 H 0.09 2.01 7.68 -2.39 -0.02 1.99 16 Total: -1.00 -72.47 399.27 3.39 -69.07 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.90 Total: 14.88 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 8.13 Total: 1.32 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -6.07 Total: -119.85 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.59 Total: -10.98 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -72.47 3.39 -69.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122276607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.616 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds