Wall clock time and date at job start Tue Mar 31 2020 13:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47135 * 2 1 4 4 N 1.46497 * 109.46756 * 179.97438 * 3 2 1 5 5 C 1.36735 * 127.14053 * 275.25163 * 4 3 2 6 6 C 1.50705 * 126.34505 * 359.96985 * 5 4 3 7 7 H 1.08994 * 109.48269 * 345.26122 * 6 5 4 8 8 C 1.53097 * 109.48055 * 105.28457 * 6 5 4 9 9 C 1.53175 * 109.16081 * 177.59041 * 8 6 5 10 10 C 1.53177 * 109.04051 * 303.01828 * 9 8 6 11 11 C 1.53093 * 109.16116 * 56.98066 * 10 9 8 12 12 O 1.42906 * 109.41670 * 302.39230 * 11 10 9 13 13 N 1.30289 * 107.30880 * 180.22645 * 5 4 3 14 14 N 1.28531 * 110.05274 * 359.77843 * 13 5 4 15 15 C 1.31213 * 109.85760 * 359.97438 * 14 13 5 16 16 N 1.38582 * 126.47245 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99890 * 290.42020 * 16 15 14 18 18 C 1.46903 * 110.99843 * 54.37102 * 16 15 14 19 19 H 1.09006 * 109.47049 * 299.99731 * 18 16 15 20 20 C 1.53000 * 109.47194 * 60.00099 * 18 16 15 21 21 C 1.50696 * 109.46949 * 180.02562 * 18 16 15 22 22 H 1.08001 * 120.00837 * 359.97438 * 21 18 16 23 23 C 1.37881 * 120.00089 * 179.97438 * 21 18 16 24 24 N 1.31509 * 120.00306 * 179.97438 * 23 21 18 25 25 Si 1.86804 * 119.99833 * 0.02562 * 23 21 18 26 26 H 1.48502 * 109.47468 * 89.99473 * 25 23 21 27 27 H 1.48496 * 109.46942 * 209.99416 * 25 23 21 28 28 H 1.48506 * 109.46983 * 329.99368 * 25 23 21 29 29 H 1.09002 * 109.47023 * 300.00009 * 1 2 3 30 30 H 1.09002 * 109.47095 * 59.99568 * 1 2 3 31 31 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46679 * 240.00410 * 2 1 3 33 33 H 1.08992 * 109.46940 * 120.00361 * 2 1 3 34 34 H 1.08995 * 109.46812 * 59.99982 * 3 2 1 35 35 H 1.08993 * 109.46999 * 299.99856 * 3 2 1 36 36 H 1.08997 * 109.51990 * 297.49423 * 8 6 5 37 37 H 1.08999 * 109.51944 * 57.68888 * 8 6 5 38 38 H 1.09001 * 109.54251 * 62.88597 * 9 8 6 39 39 H 1.08999 * 109.54391 * 183.15439 * 9 8 6 40 40 H 1.09001 * 109.52751 * 176.88355 * 10 9 8 41 41 H 1.09003 * 109.52089 * 297.01802 * 10 9 8 42 42 H 1.09002 * 109.48102 * 62.37378 * 11 10 9 43 43 H 1.08994 * 109.48213 * 182.40886 * 11 10 9 44 44 H 1.09002 * 109.46858 * 189.96154 * 17 16 15 45 45 H 1.09001 * 109.46836 * 309.95204 * 17 16 15 46 46 H 1.08998 * 109.47333 * 69.96203 * 17 16 15 47 47 H 1.08996 * 109.46934 * 179.97438 * 20 18 16 48 48 H 1.08995 * 109.46947 * 59.99783 * 20 18 16 49 49 H 1.09003 * 109.47089 * 300.00007 * 20 18 16 50 50 H 0.97009 * 120.00538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3302 1.3428 1.0864 6 6 3.9011 1.2114 2.5251 7 1 2.8452 1.4662 2.6143 8 6 4.1199 -0.2296 2.9936 9 6 3.7385 -0.3408 4.4729 10 6 4.5662 0.6646 5.2793 11 6 4.3302 2.0711 4.7226 12 8 4.6756 2.0973 3.3361 13 7 5.5559 1.3880 0.6472 14 7 5.5615 1.5038 -0.6329 15 6 4.3293 1.5385 -1.0826 16 7 3.9387 1.6569 -2.4069 17 6 4.2430 2.9964 -2.9277 18 6 4.5625 0.6160 -3.2348 19 1 5.6472 0.7101 -3.1806 20 6 4.1438 -0.7631 -2.7214 21 6 4.1159 0.7770 -4.6650 22 1 3.4362 1.5726 -4.9323 23 6 4.5748 -0.0915 -5.6326 24 7 4.1847 0.0486 -6.8806 25 14 5.7498 -1.4682 -5.1703 26 1 4.9732 -2.6798 -4.8037 27 1 6.6308 -1.7758 -6.3255 28 1 6.5796 -1.0435 -4.0142 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.4964 -0.9026 2.4050 37 1 5.1686 -0.4986 2.8666 38 1 2.6779 -0.1199 4.5935 39 1 3.9446 -1.3505 4.8278 40 1 4.2618 0.6313 6.3254 41 1 5.6238 0.4130 5.1994 42 1 3.2798 2.3372 4.8406 43 1 4.9495 2.7854 5.2649 44 1 3.7721 3.1228 -3.9026 45 1 3.8602 3.7496 -2.2390 46 1 5.3223 3.1108 -3.0281 47 1 4.6063 -1.5354 -3.3359 48 1 3.0593 -0.8570 -2.7756 49 1 4.4672 -0.8792 -1.6869 50 1 4.5073 -0.5627 -7.5613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417513621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:43 Heat of formation + Delta-G solvation = 40.788345 kcal Electronic energy + Delta-G solvation = -29396.535279 eV Core-core repulsion = 25653.628157 eV Total energy + Delta-G solvation = -3742.907122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68851 -39.51466 -37.24152 -36.08595 -33.91088 -32.95782 -32.63173 -31.98596 -30.33981 -28.82336 -26.82470 -25.71532 -25.20649 -24.49744 -23.98188 -22.22375 -21.89858 -20.78267 -20.22885 -19.46636 -17.16543 -16.81942 -16.39841 -16.25480 -15.94545 -15.45474 -15.02652 -14.97613 -14.76422 -14.72007 -14.06296 -13.85967 -13.47834 -13.31292 -13.01543 -12.94974 -12.62948 -12.43731 -12.41998 -12.23985 -11.82601 -11.70930 -11.62846 -11.45086 -11.32281 -11.13178 -10.98989 -10.94467 -10.75882 -10.70361 -10.63571 -10.24507 -10.11220 -9.83053 -9.77193 -9.59406 -9.25441 -8.65199 -8.58351 -7.91601 -6.14832 -4.15412 1.97662 2.41093 3.17209 3.24169 3.37346 3.41780 3.65661 4.24746 4.35326 4.36693 4.48791 4.53799 4.60179 4.63062 4.69187 4.75948 4.82854 5.02945 5.12558 5.15946 5.17740 5.24986 5.38971 5.42296 5.51286 5.55156 5.58058 5.60150 5.72272 5.76094 5.80842 5.84130 5.93386 6.02745 6.09424 6.14646 6.22689 6.27012 6.31250 6.34880 6.49646 6.64336 6.77697 6.90120 6.99119 7.12552 7.42275 7.65013 7.94816 8.50330 8.87759 9.14274 9.45737 10.97010 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003793 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.990904 B = 7380.237033 C = 7673.310243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.112 3.888 4 N -0.463 5.463 5 C 0.157 3.843 6 C 0.195 3.805 7 H 0.070 0.930 8 C -0.144 4.144 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.061 3.939 12 O -0.361 6.361 13 N -0.262 5.262 14 N -0.320 5.320 15 C 0.381 3.619 16 N -0.461 5.461 17 C 0.051 3.949 18 C 0.196 3.804 19 H 0.022 0.978 20 C -0.144 4.144 21 C -0.513 4.513 22 H 0.086 0.914 23 C 0.078 3.922 24 N -0.894 5.894 25 Si 0.878 3.122 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.263 1.263 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.023 0.977 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 1.083 22.884 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.011 4.011 4 N -0.157 5.157 5 C -0.110 4.110 6 C 0.134 3.866 7 H 0.087 0.913 8 C -0.183 4.183 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.015 4.015 12 O -0.279 6.279 13 N -0.103 5.103 14 N -0.164 5.164 15 C 0.025 3.975 16 N -0.188 5.188 17 C -0.096 4.096 18 C 0.090 3.910 19 H 0.040 0.960 20 C -0.201 4.201 21 C -0.551 4.551 22 H 0.104 0.896 23 C -0.125 4.125 24 N -0.531 5.531 25 Si 0.708 3.292 26 H -0.205 1.205 27 H -0.221 1.221 28 H -0.188 1.188 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.042 0.958 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.415 1.101 22.578 23.497 hybrid contribution -0.280 -0.986 0.211 1.046 sum -6.695 0.115 22.789 23.752 Atomic orbital electron populations 1.21665 0.94199 1.02405 1.02135 1.21941 0.96887 0.95524 1.03639 1.21925 0.75501 0.99041 1.04670 1.46322 1.08321 1.54776 1.06320 1.23815 0.87814 1.08962 0.90415 1.19782 0.93780 0.90592 0.82415 0.91255 1.22188 1.04201 0.95507 0.96393 1.21594 0.99769 0.99984 0.94409 1.22220 1.01783 0.95829 0.99777 1.22628 1.00240 0.96923 0.81750 1.88071 1.60528 1.61571 1.17719 1.73981 1.17053 1.15768 1.03508 1.74767 1.17593 1.21167 1.02873 1.22853 0.84986 1.00061 0.89568 1.59018 1.58860 1.06592 0.94320 1.22244 1.00433 0.86065 1.00867 1.19821 0.93495 0.85506 0.92129 0.96021 1.22173 1.01545 0.98756 0.97659 1.20852 1.29481 1.16368 0.88358 0.89564 1.24814 0.95672 0.97222 0.94775 1.69851 1.44337 1.38052 1.00900 0.86985 0.81549 0.82822 0.77840 1.20507 1.22111 1.18835 0.92762 0.91822 0.92033 0.90001 0.91858 0.89803 0.87439 0.90682 0.89730 0.91733 0.90965 0.90773 0.90587 0.93196 0.88411 0.88713 0.93594 0.94332 0.93307 0.92286 0.95813 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.58 6.26 -26.73 -0.17 -1.75 16 3 C 0.11 1.36 5.90 -4.04 -0.02 1.34 16 4 N -0.46 -7.60 2.81 -114.09 -0.32 -7.92 16 5 C 0.16 2.62 6.95 -154.02 -1.07 1.55 16 6 C 0.19 2.41 3.06 -27.83 -0.09 2.32 16 7 H 0.07 0.70 7.08 -51.93 -0.37 0.33 16 8 C -0.14 -1.53 5.40 -26.59 -0.14 -1.68 16 9 C -0.12 -0.91 6.03 -26.55 -0.16 -1.07 16 10 C -0.16 -1.17 6.14 -26.59 -0.16 -1.33 16 11 C 0.06 0.52 6.84 37.21 0.25 0.78 16 12 O -0.36 -4.74 10.39 -35.23 -0.37 -5.11 16 13 N -0.26 -5.38 12.18 32.99 0.40 -4.98 16 14 N -0.32 -7.16 12.01 30.31 0.36 -6.80 16 15 C 0.38 7.68 5.05 -318.88 -1.61 6.07 16 16 N -0.46 -9.70 4.63 -176.08 -0.82 -10.52 16 17 C 0.05 1.00 9.10 60.07 0.55 1.55 16 18 C 0.20 4.75 1.54 -68.86 -0.11 4.64 16 19 H 0.02 0.59 7.08 -51.93 -0.37 0.22 16 20 C -0.14 -3.27 8.55 37.16 0.32 -2.95 16 21 C -0.51 -13.86 8.57 -34.44 -0.30 -14.15 16 22 H 0.09 2.46 6.66 -52.49 -0.35 2.11 16 23 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 24 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 25 Si 0.88 22.01 24.37 -169.99 -4.14 17.87 16 26 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.26 -6.64 6.53 56.52 0.37 -6.27 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.15 7.55 -51.93 -0.39 0.76 16 33 H 0.06 0.66 7.54 -51.93 -0.39 0.26 16 34 H 0.08 0.78 7.31 -51.93 -0.38 0.40 16 35 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 36 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.88 6.47 -51.93 -0.34 1.55 16 45 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 46 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 47 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 48 H 0.06 1.27 7.55 -51.93 -0.39 0.88 16 49 H 0.02 0.51 7.22 -51.93 -0.38 0.13 16 50 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -33.04 384.88 -9.32 -42.36 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.58 Total: -1.50 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.44 Total: -3.49 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.40 Total: -55.93 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.37 Total: -5.11 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.04 -9.32 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417513621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.150 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds