Wall clock time and date at job start Tue Mar 31 2020 13:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47661 * 2 1 4 4 C 1.52999 * 109.46923 * 64.99517 * 3 2 1 5 5 C 1.53001 * 109.47005 * 185.00297 * 4 3 2 6 6 N 1.46500 * 109.47555 * 184.99706 * 3 2 1 7 7 C 1.35032 * 124.88635 * 275.00421 * 6 3 2 8 8 C 1.35367 * 107.22837 * 179.97438 * 7 6 3 9 9 C 1.41504 * 105.50330 * 0.26137 * 8 7 6 10 10 C 1.47705 * 126.51490 * 179.70452 * 9 8 7 11 11 O 1.21564 * 120.00576 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00007 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47307 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47407 * 54.99296 * 14 13 12 16 16 C 1.53004 * 109.46764 * 295.00013 * 14 13 12 17 17 C 1.52999 * 109.47342 * 175.00408 * 14 13 12 18 18 N 1.46499 * 109.47209 * 184.99802 * 17 14 13 19 19 C 1.36934 * 120.00312 * 179.97438 * 18 17 14 20 20 H 1.07995 * 119.99499 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00304 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47350 * 90.00106 * 23 21 19 25 25 H 1.48500 * 109.47314 * 210.00447 * 23 21 19 26 26 H 1.48503 * 109.47139 * 330.00269 * 23 21 19 27 27 N 1.28472 * 124.88099 * 94.97456 * 6 3 2 28 28 H 1.09001 * 109.46883 * 59.99862 * 1 2 3 29 29 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46857 * 300.00229 * 1 2 3 31 31 H 1.09001 * 109.47356 * 239.99601 * 2 1 3 32 32 H 1.09001 * 109.46883 * 120.00138 * 2 1 3 33 33 H 1.09008 * 109.47032 * 304.99978 * 3 2 1 34 34 H 1.08994 * 109.47616 * 305.00211 * 4 3 2 35 35 H 1.08999 * 109.47135 * 65.00700 * 4 3 2 36 36 H 1.09002 * 109.47314 * 60.00391 * 5 4 3 37 37 H 1.09000 * 109.47458 * 180.02562 * 5 4 3 38 38 H 1.09003 * 109.47315 * 299.99974 * 5 4 3 39 39 H 1.07999 * 126.38674 * 359.94633 * 7 6 3 40 40 H 1.08002 * 127.24456 * 179.97438 * 8 7 6 41 41 H 0.97003 * 120.00212 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.46817 * 299.99967 * 13 12 10 43 43 H 1.09002 * 109.47133 * 60.00013 * 13 12 10 44 44 H 1.08998 * 109.47410 * 300.00172 * 16 14 13 45 45 H 1.09003 * 109.47354 * 60.00244 * 16 14 13 46 46 H 1.09003 * 109.47041 * 180.02562 * 16 14 13 47 47 H 1.09000 * 109.46480 * 304.99670 * 17 14 13 48 48 H 1.08990 * 109.47273 * 64.99619 * 17 14 13 49 49 H 0.97010 * 119.99907 * 359.97438 * 18 17 14 50 50 H 0.96993 * 119.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0355 3.6023 1.2558 6 7 3.5002 1.4441 -0.1203 7 6 4.3604 1.3164 0.9127 8 6 5.6123 1.3651 0.4002 9 6 5.4438 1.5350 -0.9944 10 6 6.5178 1.6514 -2.0017 11 8 7.6825 1.6038 -1.6568 12 7 6.2065 1.8103 -3.3034 13 6 7.2716 1.9263 -4.3025 14 6 6.6522 2.0978 -5.6909 15 1 5.9702 2.9480 -5.6820 16 6 5.8819 0.8301 -6.0658 17 6 7.7602 2.3434 -6.7170 18 7 7.1617 2.6258 -8.0240 19 6 7.9641 2.8794 -9.1042 20 1 9.0382 2.8716 -8.9925 21 6 7.3970 3.1465 -10.3427 22 7 6.0878 3.1565 -10.4786 23 14 8.4916 3.4931 -11.8161 24 1 8.8040 2.2187 -12.5114 25 1 7.7883 4.4077 -12.7510 26 1 9.7529 4.1286 -11.3571 27 7 4.1463 1.5669 -1.2239 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6055 1.9815 -0.8419 34 1 0.5564 2.0471 1.4401 35 1 2.1408 1.6419 2.1426 36 1 1.5299 4.0870 0.4205 37 1 1.7475 4.0896 2.1873 38 1 3.1145 3.6818 1.1231 39 1 4.0984 1.1981 1.9537 40 1 6.5437 1.2942 0.9424 41 1 5.2771 1.8487 -3.5787 42 1 7.8927 2.7922 -4.0726 43 1 7.8845 1.0250 -4.2865 44 1 6.5638 -0.0202 -6.0746 45 1 5.0924 0.6551 -5.3348 46 1 5.4409 0.9521 -7.0551 47 1 8.3644 3.1944 -6.4025 48 1 8.3907 1.4574 -6.7900 49 1 6.1968 2.6332 -8.1241 50 1 5.6916 3.3428 -11.3441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:19 Heat of formation + Delta-G solvation = 31.046577 kcal Electronic energy + Delta-G solvation = -26793.905421 eV Core-core repulsion = 23050.575865 eV Total energy + Delta-G solvation = -3743.329556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95753 -39.40127 -37.48398 -36.68734 -34.28809 -32.62974 -32.42632 -31.74917 -30.81249 -29.90405 -27.33423 -26.31962 -25.31445 -23.59323 -23.35972 -22.52636 -21.99931 -20.47630 -20.11931 -19.60424 -18.13105 -17.21833 -16.69403 -16.35133 -15.88145 -15.34982 -15.29054 -14.73030 -14.55967 -14.45429 -14.15025 -14.04956 -13.92481 -13.51381 -13.26904 -13.03738 -12.88662 -12.80112 -12.55285 -12.47678 -12.23179 -12.17324 -11.97932 -11.66453 -11.49444 -11.24422 -11.08364 -11.00411 -10.86631 -10.64206 -10.51819 -10.35860 -10.12550 -9.91546 -9.63064 -9.45414 -9.25866 -8.88112 -8.83302 -6.87656 -5.73070 -3.01110 1.47937 1.96932 2.11675 3.27615 3.45368 3.46794 3.51892 3.53655 3.77339 4.09408 4.31543 4.41650 4.45618 4.52765 4.63165 4.70962 4.73296 4.93547 4.97687 5.07303 5.14211 5.18576 5.30089 5.30725 5.38288 5.41512 5.45907 5.48153 5.52942 5.58797 5.62036 5.65803 5.69132 5.90578 6.04220 6.07232 6.16991 6.22283 6.33888 6.46817 6.53187 6.59288 6.72311 6.84364 6.93983 7.51326 7.74474 7.80939 8.28943 8.46269 9.57355 10.15400 10.50271 11.50075 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.002074 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.708483 B =13499.369510 C =14359.066040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.147 3.853 4 C -0.136 4.136 5 C -0.159 4.159 6 N -0.273 5.273 7 C -0.020 4.020 8 C -0.179 4.179 9 C -0.016 4.016 10 C 0.601 3.399 11 O -0.538 6.538 12 N -0.711 5.711 13 C 0.126 3.874 14 C -0.110 4.110 15 H 0.076 0.924 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 N -0.259 5.259 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.177 0.823 40 H 0.161 0.839 41 H 0.406 0.594 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.021 0.979 48 H 0.023 0.977 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.734 -5.187 29.368 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.046 3.954 4 C -0.174 4.174 5 C -0.216 4.216 6 N -0.061 5.061 7 C -0.162 4.162 8 C -0.207 4.207 9 C -0.176 4.176 10 C 0.385 3.615 11 O -0.413 6.413 12 N -0.363 5.363 13 C 0.003 3.997 14 C -0.129 4.129 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.095 5.095 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.195 0.805 40 H 0.178 0.822 41 H 0.242 0.758 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.041 0.959 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.630 -5.074 28.633 32.115 hybrid contribution 0.327 0.116 -0.358 0.498 sum -13.303 -4.959 28.276 31.640 Atomic orbital electron populations 1.21798 0.93812 1.02797 1.02497 1.21950 0.97236 0.94483 1.03763 1.21777 0.74045 0.98456 1.01130 1.22002 1.03089 0.96647 0.95629 1.21835 1.02274 0.95015 1.02502 1.45654 1.07265 1.49780 1.03429 1.22703 0.89481 1.08503 0.95528 1.21759 0.98005 1.07993 0.92986 1.21984 0.90351 1.10456 0.94821 1.16896 0.86597 0.76592 0.81417 1.90787 1.18869 1.51093 1.80533 1.45925 1.11187 1.73002 1.06157 1.21459 0.89376 1.02304 0.86578 1.21547 0.99030 0.99213 0.93138 0.90519 1.21791 0.99411 0.96849 1.01836 1.20578 0.93002 0.97523 0.85661 1.42348 1.06301 1.85181 1.03713 1.19248 0.90283 1.39537 0.87716 0.91141 1.24737 0.95748 1.02933 0.97751 1.69659 1.08549 1.56498 1.23701 0.86174 0.79429 0.77638 0.82877 1.21763 1.21827 1.20760 1.73518 1.05852 1.18756 1.11335 0.91977 0.91728 0.92002 0.90570 0.90971 0.87164 0.88803 0.90621 0.92163 0.91842 0.92314 0.80546 0.82181 0.75849 0.91170 0.91157 0.92839 0.93827 0.91200 0.96073 0.95948 0.78204 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.67 37.16 0.36 -0.15 16 2 C -0.14 -0.66 5.73 -26.73 -0.15 -0.81 16 3 C 0.15 0.83 2.66 -67.93 -0.18 0.65 16 4 C -0.14 -0.48 4.94 -26.73 -0.13 -0.62 16 5 C -0.16 -0.78 9.77 37.16 0.36 -0.42 16 6 N -0.27 -2.38 2.81 -54.83 -0.15 -2.53 16 7 C -0.02 -0.16 9.76 -17.17 -0.17 -0.33 16 8 C -0.18 -1.95 10.81 -39.36 -0.43 -2.38 16 9 C -0.02 -0.21 7.13 -82.77 -0.59 -0.80 16 10 C 0.60 9.20 7.82 -12.39 -0.10 9.11 16 11 O -0.54 -9.77 16.93 5.31 0.09 -9.68 16 12 N -0.71 -10.04 5.28 -61.29 -0.32 -10.36 16 13 C 0.13 1.91 5.06 -4.04 -0.02 1.89 16 14 C -0.11 -1.81 2.46 -90.62 -0.22 -2.04 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.25 8.94 37.16 0.33 -1.92 16 17 C 0.16 3.30 5.65 -4.04 -0.02 3.28 16 18 N -0.73 -18.75 5.33 -59.92 -0.32 -19.07 16 19 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.94 -28.58 13.06 55.49 0.72 -27.86 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 N -0.26 -3.05 11.67 33.42 0.39 -2.66 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.13 6.46 -51.93 -0.34 -0.20 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.11 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.09 0.19 6.34 -51.93 -0.33 -0.14 16 35 H 0.08 0.21 6.80 -51.93 -0.35 -0.14 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.40 7.09 -51.93 -0.37 0.03 16 39 H 0.18 0.79 7.04 -52.49 -0.37 0.42 16 40 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.41 5.23 7.38 -40.82 -0.30 4.93 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 46 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.38 10.25 6.85 -40.82 -0.28 9.97 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -34.24 404.20 -8.28 -42.51 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.55 Total: 7.80 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.20 Total: -2.00 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.32 Total: -62.49 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.24 -8.28 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.560 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds