Wall clock time and date at job start Tue Mar 31 2020 13:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47661 * 2 1 4 4 C 1.52999 * 109.46923 * 64.99517 * 3 2 1 5 5 C 1.53001 * 109.47005 * 185.00297 * 4 3 2 6 6 N 1.46500 * 109.47555 * 184.99706 * 3 2 1 7 7 C 1.35032 * 124.88635 * 275.00421 * 6 3 2 8 8 C 1.35367 * 107.22837 * 179.97438 * 7 6 3 9 9 C 1.41504 * 105.50330 * 0.26137 * 8 7 6 10 10 C 1.47705 * 126.51490 * 179.70452 * 9 8 7 11 11 O 1.21564 * 120.00576 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00007 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47307 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47407 * 54.99296 * 14 13 12 16 16 C 1.53004 * 109.46764 * 295.00013 * 14 13 12 17 17 C 1.52999 * 109.47342 * 175.00408 * 14 13 12 18 18 N 1.46499 * 109.47209 * 184.99802 * 17 14 13 19 19 C 1.36934 * 120.00312 * 179.97438 * 18 17 14 20 20 H 1.07995 * 119.99499 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00304 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47350 * 90.00106 * 23 21 19 25 25 H 1.48500 * 109.47314 * 210.00447 * 23 21 19 26 26 H 1.48503 * 109.47139 * 330.00269 * 23 21 19 27 27 N 1.28472 * 124.88099 * 94.97456 * 6 3 2 28 28 H 1.09001 * 109.46883 * 59.99862 * 1 2 3 29 29 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46857 * 300.00229 * 1 2 3 31 31 H 1.09001 * 109.47356 * 239.99601 * 2 1 3 32 32 H 1.09001 * 109.46883 * 120.00138 * 2 1 3 33 33 H 1.09008 * 109.47032 * 304.99978 * 3 2 1 34 34 H 1.08994 * 109.47616 * 305.00211 * 4 3 2 35 35 H 1.08999 * 109.47135 * 65.00700 * 4 3 2 36 36 H 1.09002 * 109.47314 * 60.00391 * 5 4 3 37 37 H 1.09000 * 109.47458 * 180.02562 * 5 4 3 38 38 H 1.09003 * 109.47315 * 299.99974 * 5 4 3 39 39 H 1.07999 * 126.38674 * 359.94633 * 7 6 3 40 40 H 1.08002 * 127.24456 * 179.97438 * 8 7 6 41 41 H 0.97003 * 120.00212 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.46817 * 299.99967 * 13 12 10 43 43 H 1.09002 * 109.47133 * 60.00013 * 13 12 10 44 44 H 1.08998 * 109.47410 * 300.00172 * 16 14 13 45 45 H 1.09003 * 109.47354 * 60.00244 * 16 14 13 46 46 H 1.09003 * 109.47041 * 180.02562 * 16 14 13 47 47 H 1.09000 * 109.46480 * 304.99670 * 17 14 13 48 48 H 1.08990 * 109.47273 * 64.99619 * 17 14 13 49 49 H 0.97010 * 119.99907 * 359.97438 * 18 17 14 50 50 H 0.96993 * 119.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0355 3.6023 1.2558 6 7 3.5002 1.4441 -0.1203 7 6 4.3604 1.3164 0.9127 8 6 5.6123 1.3651 0.4002 9 6 5.4438 1.5350 -0.9944 10 6 6.5178 1.6514 -2.0017 11 8 7.6825 1.6038 -1.6568 12 7 6.2065 1.8103 -3.3034 13 6 7.2716 1.9263 -4.3025 14 6 6.6522 2.0978 -5.6909 15 1 5.9702 2.9480 -5.6820 16 6 5.8819 0.8301 -6.0658 17 6 7.7602 2.3434 -6.7170 18 7 7.1617 2.6258 -8.0240 19 6 7.9641 2.8794 -9.1042 20 1 9.0382 2.8716 -8.9925 21 6 7.3970 3.1465 -10.3427 22 7 6.0878 3.1565 -10.4786 23 14 8.4916 3.4931 -11.8161 24 1 8.8040 2.2187 -12.5114 25 1 7.7883 4.4077 -12.7510 26 1 9.7529 4.1286 -11.3571 27 7 4.1463 1.5669 -1.2239 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6055 1.9815 -0.8419 34 1 0.5564 2.0471 1.4401 35 1 2.1408 1.6419 2.1426 36 1 1.5299 4.0870 0.4205 37 1 1.7475 4.0896 2.1873 38 1 3.1145 3.6818 1.1231 39 1 4.0984 1.1981 1.9537 40 1 6.5437 1.2942 0.9424 41 1 5.2771 1.8487 -3.5787 42 1 7.8927 2.7922 -4.0726 43 1 7.8845 1.0250 -4.2865 44 1 6.5638 -0.0202 -6.0746 45 1 5.0924 0.6551 -5.3348 46 1 5.4409 0.9521 -7.0551 47 1 8.3644 3.1944 -6.4025 48 1 8.3907 1.4574 -6.7900 49 1 6.1968 2.6332 -8.1241 50 1 5.6916 3.3428 -11.3441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753632314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:18 Heat of formation + Delta-G solvation = 8.695121 kcal Electronic energy + Delta-G solvation = -26794.874653 eV Core-core repulsion = 23050.575865 eV Total energy + Delta-G solvation = -3744.298788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.72067 -40.60427 -38.28553 -37.87803 -35.98288 -34.16508 -32.92300 -32.52447 -31.98518 -31.36362 -28.19609 -27.56746 -26.83217 -24.79552 -23.94593 -23.57974 -23.00786 -21.61857 -21.01335 -20.68543 -19.28581 -18.73638 -17.75345 -17.26760 -17.07615 -16.48867 -16.43783 -15.76080 -15.58875 -15.47200 -15.32682 -15.06603 -14.79141 -14.77501 -14.61174 -14.13209 -13.93375 -13.64359 -13.59245 -13.42186 -13.11983 -12.96879 -12.83441 -12.79569 -12.52774 -12.21674 -12.18277 -12.04753 -12.01101 -11.95016 -11.79853 -11.76277 -11.66976 -11.57290 -11.24907 -10.94385 -10.32565 -10.12831 -9.93071 -8.99638 -7.95277 -5.23776 0.53257 1.21055 1.47198 1.47979 1.49304 1.57835 2.15243 2.36951 2.56931 3.25884 3.38265 3.60404 3.69674 3.73825 3.90648 3.93826 3.94408 4.05195 4.14791 4.25062 4.33836 4.41661 4.42852 4.52496 4.55305 4.66078 4.68975 4.73295 4.77853 4.80683 4.83474 4.92252 5.01591 5.01814 5.04923 5.11858 5.12231 5.16676 5.28578 5.32273 5.34386 5.38686 5.41563 5.45387 5.50061 5.91482 6.27247 6.41648 6.92383 7.14453 7.33849 8.08808 8.33379 9.28400 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.002074 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.708483 B =13499.369510 C =14359.066040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.139 3.861 4 C -0.128 4.128 5 C -0.159 4.159 6 N -0.264 5.264 7 C 0.002 3.998 8 C -0.200 4.200 9 C -0.046 4.046 10 C 0.599 3.401 11 O -0.574 6.574 12 N -0.704 5.704 13 C 0.137 3.863 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.134 4.134 17 C 0.158 3.842 18 N -0.742 5.742 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.270 1.270 27 N -0.275 5.275 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.219 0.781 40 H 0.163 0.837 41 H 0.413 0.587 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.022 0.978 48 H 0.024 0.976 49 H 0.376 0.624 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.889 -5.557 31.513 35.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.040 3.960 4 C -0.166 4.166 5 C -0.217 4.217 6 N -0.053 5.053 7 C -0.141 4.141 8 C -0.228 4.228 9 C -0.205 4.205 10 C 0.385 3.615 11 O -0.452 6.452 12 N -0.355 5.355 13 C 0.013 3.987 14 C -0.113 4.113 15 H 0.094 0.906 16 C -0.192 4.192 17 C 0.031 3.969 18 N -0.385 5.385 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.804 3.196 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.195 1.195 27 N -0.112 5.112 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.236 0.764 40 H 0.180 0.820 41 H 0.249 0.751 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.042 0.958 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.785 -5.450 30.795 34.593 hybrid contribution 0.609 0.222 -0.921 1.126 sum -14.176 -5.227 29.874 33.478 Atomic orbital electron populations 1.21798 0.92461 1.03152 1.03223 1.21903 0.98289 0.93511 1.03139 1.22118 0.72170 0.99341 1.02380 1.22036 1.04641 0.95311 0.94600 1.21832 1.00707 0.96238 1.02887 1.46048 1.08444 1.47899 1.02901 1.23229 0.88187 1.05781 0.96898 1.21960 0.99498 1.09162 0.92219 1.21784 0.90446 1.12993 0.95248 1.17220 0.86761 0.75681 0.81796 1.90753 1.20419 1.52885 1.81113 1.45813 1.11212 1.72676 1.05843 1.21235 0.89445 1.02108 0.85888 1.21324 0.97697 0.99528 0.92734 0.90635 1.21709 0.99921 0.96428 1.01105 1.20713 0.94203 0.97346 0.84651 1.42519 1.05863 1.85149 1.04973 1.19643 0.90847 1.38540 0.88726 0.90732 1.25574 0.97117 1.03581 1.00581 1.69812 1.10186 1.57918 1.24083 0.85120 0.77956 0.77347 0.79218 1.21347 1.22073 1.19543 1.73455 1.05436 1.19371 1.12932 0.92417 0.91592 0.90125 0.92870 0.89928 0.87839 0.86532 0.88914 0.92953 0.90546 0.94463 0.76449 0.81958 0.75066 0.91594 0.91229 0.92702 0.91367 0.93649 0.96012 0.95767 0.79146 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.67 71.98 0.70 0.07 16 2 C -0.13 -0.99 5.73 30.59 0.18 -0.81 16 3 C 0.14 1.28 2.66 44.99 0.12 1.40 16 4 C -0.13 -0.48 4.94 30.59 0.15 -0.33 16 5 C -0.16 -1.22 9.77 71.98 0.70 -0.51 16 6 N -0.26 -4.20 2.81 -327.38 -0.92 -5.12 16 7 C 0.00 0.03 9.76 83.54 0.81 0.84 16 8 C -0.20 -4.22 10.81 22.41 0.24 -3.97 16 9 C -0.05 -1.23 7.13 42.46 0.30 -0.92 16 10 C 0.60 18.68 7.82 86.74 0.68 19.36 16 11 O -0.57 -21.36 16.93 -3.92 -0.07 -21.43 16 12 N -0.70 -19.92 5.28 -466.10 -2.46 -22.39 16 13 C 0.14 4.14 5.06 86.38 0.44 4.58 16 14 C -0.09 -3.08 2.46 -10.79 -0.03 -3.11 16 15 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.13 -4.24 8.94 71.98 0.64 -3.60 16 17 C 0.16 6.52 5.65 86.38 0.49 7.01 16 18 N -0.74 -38.56 5.33 -343.47 -1.83 -40.39 16 19 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 20 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 22 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 23 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 N -0.27 -6.36 11.67 -48.18 -0.56 -6.92 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.05 6.46 -2.39 -0.02 0.04 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.12 -0.02 6.34 -2.39 -0.02 -0.03 16 35 H 0.09 0.08 6.80 -2.39 -0.02 0.07 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.04 0.45 7.09 -2.39 -0.02 0.43 16 39 H 0.22 1.03 7.04 -2.91 -0.02 1.01 16 40 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.41 10.55 7.38 -92.71 -0.68 9.87 16 42 H 0.07 2.06 8.14 -2.38 -0.02 2.05 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.07 1.80 7.18 -2.39 -0.02 1.78 16 46 H 0.04 1.66 7.18 -2.39 -0.02 1.65 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.38 20.51 6.85 -92.70 -0.63 19.88 16 50 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.97 404.20 2.81 -72.15 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.39 Total: 32.05 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 6.73 Total: 2.76 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -5.49 Total: -134.58 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.97 2.81 -72.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.850 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds