Wall clock time and date at job start Tue Mar 31 2020 13:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 C 1.53002 * 109.47095 * 64.99792 * 3 2 1 5 5 C 1.52997 * 109.47264 * 185.00244 * 4 3 2 6 6 N 1.46496 * 109.47452 * 184.99867 * 3 2 1 7 7 C 1.35033 * 124.88783 * 275.00221 * 6 3 2 8 8 C 1.35365 * 107.23063 * 180.02562 * 7 6 3 9 9 C 1.41500 * 105.50387 * 359.97438 * 8 7 6 10 10 C 1.47709 * 126.51722 * 180.02562 * 9 8 7 11 11 O 1.21569 * 120.00120 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00095 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47126 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47371 * 305.00268 * 14 13 12 16 16 C 1.53008 * 109.47019 * 65.00017 * 14 13 12 17 17 C 1.52999 * 109.47359 * 185.00138 * 14 13 12 18 18 N 1.46498 * 109.47427 * 175.00027 * 17 14 13 19 19 C 1.36941 * 119.99809 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99784 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99450 * 180.02562 * 19 18 17 22 22 N 1.31611 * 120.00501 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99510 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47185 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47396 * 120.00043 * 23 21 19 26 26 H 1.48502 * 109.47041 * 239.99990 * 23 21 19 27 27 N 1.28474 * 124.88460 * 95.02568 * 6 3 2 28 28 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47787 * 299.99858 * 1 2 3 30 30 H 1.09001 * 109.47679 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47185 * 239.99862 * 2 1 3 32 32 H 1.08994 * 109.47336 * 119.99965 * 2 1 3 33 33 H 1.09008 * 109.47199 * 305.00124 * 3 2 1 34 34 H 1.09001 * 109.47046 * 305.00431 * 4 3 2 35 35 H 1.08998 * 109.46999 * 65.00197 * 4 3 2 36 36 H 1.09007 * 109.46915 * 60.00249 * 5 4 3 37 37 H 1.09002 * 109.47527 * 179.97438 * 5 4 3 38 38 H 1.08994 * 109.47302 * 300.00409 * 5 4 3 39 39 H 1.08004 * 126.38179 * 0.03477 * 7 6 3 40 40 H 1.08001 * 127.24676 * 180.02562 * 8 7 6 41 41 H 0.97004 * 119.99827 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47024 * 300.00147 * 13 12 10 43 43 H 1.08998 * 109.46575 * 60.00390 * 13 12 10 44 44 H 1.08997 * 109.47229 * 60.00116 * 16 14 13 45 45 H 1.09004 * 109.46537 * 179.97438 * 16 14 13 46 46 H 1.08995 * 109.46958 * 299.99833 * 16 14 13 47 47 H 1.09004 * 109.47047 * 295.00373 * 17 14 13 48 48 H 1.08994 * 109.46765 * 54.99691 * 17 14 13 49 49 H 0.96994 * 119.99921 * 0.02562 * 18 17 14 50 50 H 0.96998 * 120.00139 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1265 1.3073 5 6 2.0352 3.6024 1.2559 6 7 3.5000 1.4443 -0.1203 7 6 4.3602 1.3167 0.9126 8 6 5.6122 1.3665 0.4003 9 6 5.4436 1.5303 -0.9950 10 6 6.5175 1.6388 -2.0034 11 8 7.6823 1.5895 -1.6587 12 7 6.2061 1.7924 -3.3056 13 6 7.2712 1.9006 -4.3057 14 6 6.6516 2.0673 -5.6947 15 1 5.9589 1.2473 -5.8843 16 6 5.8979 3.3972 -5.7606 17 6 7.7579 2.0551 -6.7515 18 7 7.1577 2.0946 -8.0873 19 6 7.9586 2.0922 -9.1981 20 1 9.0327 2.0617 -9.0893 21 6 7.3899 2.1302 -10.4638 22 7 6.0810 2.1689 -10.5963 23 14 8.4824 2.1263 -11.9790 24 1 9.9069 2.0800 -11.5621 25 1 8.1707 0.9364 -12.8110 26 1 8.2380 3.3601 -12.7686 27 7 4.1461 1.5680 -1.2239 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6053 1.9816 -0.8419 34 1 0.5562 2.0470 1.4401 35 1 2.1407 1.6420 2.1426 36 1 1.5296 4.0870 0.4206 37 1 1.7464 4.0899 2.1871 38 1 3.1141 3.6820 1.1231 39 1 4.0982 1.1970 1.9535 40 1 6.5436 1.2953 0.9423 41 1 5.2767 1.8322 -3.5806 42 1 7.8948 2.7657 -4.0802 43 1 7.8814 0.9976 -4.2856 44 1 6.5905 4.2172 -5.5710 45 1 5.4569 3.5161 -6.7503 46 1 5.1097 3.4058 -5.0078 47 1 8.3998 2.9256 -6.6156 48 1 8.3509 1.1466 -6.6462 49 1 6.1932 2.1231 -8.1849 50 1 5.6836 2.1950 -11.4807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:22 Heat of formation + Delta-G solvation = 30.969088 kcal Electronic energy + Delta-G solvation = -26794.143900 eV Core-core repulsion = 23050.810984 eV Total energy + Delta-G solvation = -3743.332917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95784 -39.40111 -37.48411 -36.68786 -34.28962 -32.63015 -32.42778 -31.74997 -30.81306 -29.90596 -27.33465 -26.32067 -25.31608 -23.59516 -23.35960 -22.52679 -22.00133 -20.47594 -20.12038 -19.60470 -18.13059 -17.21959 -16.69427 -16.35194 -15.89527 -15.36944 -15.22438 -14.71789 -14.67449 -14.41644 -14.12546 -14.02540 -13.93183 -13.53910 -13.26546 -13.02600 -12.89472 -12.80274 -12.55402 -12.47535 -12.22883 -12.17610 -11.98358 -11.66407 -11.49686 -11.24055 -11.08684 -11.00497 -10.87875 -10.65147 -10.51103 -10.35856 -10.10910 -9.90280 -9.63687 -9.45424 -9.25895 -8.88219 -8.83980 -6.87757 -5.73366 -3.01373 1.47923 1.96930 2.11678 3.27561 3.45337 3.46212 3.52073 3.54277 3.77274 4.09454 4.31407 4.41721 4.45655 4.52755 4.62985 4.71204 4.73218 4.93498 4.97417 5.07318 5.14295 5.18509 5.29876 5.30636 5.37924 5.41763 5.46246 5.48067 5.52981 5.58750 5.61922 5.66137 5.68559 5.90509 6.04130 6.07192 6.16881 6.22245 6.33808 6.46711 6.53164 6.59216 6.72200 6.84272 6.93843 7.51283 7.74849 7.80906 8.28901 8.45927 9.57158 10.15201 10.50065 11.49823 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002076 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.044629 B =13485.318093 C =14386.504268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.147 3.853 4 C -0.136 4.136 5 C -0.159 4.159 6 N -0.273 5.273 7 C -0.020 4.020 8 C -0.179 4.179 9 C -0.016 4.016 10 C 0.601 3.399 11 O -0.538 6.538 12 N -0.711 5.711 13 C 0.126 3.874 14 C -0.110 4.110 15 H 0.076 0.924 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.259 5.259 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.177 0.823 40 H 0.161 0.839 41 H 0.406 0.594 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.023 0.977 48 H 0.021 0.979 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 -1.422 29.842 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.046 3.954 4 C -0.174 4.174 5 C -0.216 4.216 6 N -0.061 5.061 7 C -0.162 4.162 8 C -0.207 4.207 9 C -0.176 4.176 10 C 0.385 3.615 11 O -0.413 6.413 12 N -0.363 5.363 13 C 0.003 3.997 14 C -0.129 4.129 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.095 5.095 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.195 0.805 40 H 0.178 0.822 41 H 0.242 0.758 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.575 -1.341 29.107 32.145 hybrid contribution 0.312 -0.093 -0.386 0.506 sum -13.262 -1.435 28.721 31.668 Atomic orbital electron populations 1.21796 0.93810 1.02809 1.02484 1.21949 0.97237 0.94473 1.03784 1.21776 0.74044 0.98466 1.01113 1.22004 1.03092 0.96637 0.95642 1.21832 1.02261 0.95023 1.02493 1.45655 1.07265 1.49767 1.03445 1.22703 0.89478 1.08506 0.95527 1.21757 0.98005 1.08018 0.92962 1.21983 0.90351 1.10477 0.94799 1.16897 0.86598 0.76578 0.81431 1.90789 1.18867 1.51043 1.80589 1.45924 1.11190 1.73047 1.06106 1.21459 0.89378 1.02300 0.86579 1.21548 0.99089 0.99040 0.93255 0.90520 1.21790 0.99493 0.96441 1.02162 1.20580 0.93008 0.98157 0.85023 1.42354 1.06347 1.89377 0.99475 1.19297 0.90350 1.42112 0.84961 0.91078 1.24738 0.95749 1.03207 0.97497 1.69665 1.08528 1.58071 1.22111 0.86107 0.79546 0.77124 0.83384 1.20538 1.21921 1.21924 1.73517 1.05854 1.18754 1.11341 0.91720 0.92016 0.91973 0.90549 0.90967 0.87172 0.88804 0.90617 0.92183 0.91846 0.92314 0.80546 0.82181 0.75848 0.91165 0.91160 0.92837 0.91199 0.93825 0.95946 0.96068 0.78208 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.67 37.15 0.36 -0.16 16 2 C -0.14 -0.67 5.73 -26.74 -0.15 -0.82 16 3 C 0.15 0.83 2.66 -67.93 -0.18 0.65 16 4 C -0.14 -0.48 4.94 -26.73 -0.13 -0.61 16 5 C -0.16 -0.77 9.77 37.16 0.36 -0.40 16 6 N -0.27 -2.38 2.81 -54.83 -0.15 -2.53 16 7 C -0.02 -0.16 9.75 -17.17 -0.17 -0.33 16 8 C -0.18 -1.95 10.81 -39.36 -0.43 -2.38 16 9 C -0.02 -0.21 7.13 -82.77 -0.59 -0.80 16 10 C 0.60 9.20 7.82 -12.39 -0.10 9.10 16 11 O -0.54 -9.76 16.93 5.30 0.09 -9.67 16 12 N -0.71 -10.03 5.28 -61.29 -0.32 -10.36 16 13 C 0.13 1.91 5.06 -4.04 -0.02 1.89 16 14 C -0.11 -1.81 2.46 -90.62 -0.22 -2.04 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.25 8.94 37.16 0.33 -1.91 16 17 C 0.16 3.30 5.65 -4.04 -0.02 3.27 16 18 N -0.73 -18.75 5.33 -59.91 -0.32 -19.07 16 19 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 N -0.26 -3.05 11.67 33.42 0.39 -2.66 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.14 6.46 -51.93 -0.34 -0.20 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.09 0.19 6.34 -51.93 -0.33 -0.14 16 35 H 0.08 0.21 6.80 -51.93 -0.35 -0.14 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.40 7.09 -51.93 -0.37 0.03 16 39 H 0.18 0.79 7.04 -52.48 -0.37 0.42 16 40 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.41 5.23 7.38 -40.82 -0.30 4.93 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 46 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.38 10.24 6.85 -40.82 -0.28 9.96 16 50 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -34.25 404.20 -8.28 -42.52 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.55 Total: 7.75 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.20 Total: -1.98 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.32 Total: -62.46 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.25 -8.28 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.493 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds