Wall clock time and date at job start Tue Mar 31 2020 12:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 C 1.53000 * 109.46758 * 240.00571 * 2 1 3 5 5 C 1.53006 * 109.46788 * 174.99919 * 4 2 1 6 6 H 1.08997 * 109.46927 * 54.99954 * 5 4 2 7 7 C 1.53003 * 109.46906 * 175.00033 * 5 4 2 8 8 N 1.46498 * 109.47225 * 295.00044 * 5 4 2 9 9 C 1.34769 * 119.99875 * 155.00199 * 8 5 4 10 10 O 1.21598 * 120.00404 * 359.97438 * 9 8 5 11 11 C 1.47435 * 119.99797 * 179.97438 * 9 8 5 12 12 C 1.38041 * 126.41455 * 355.75593 * 11 9 8 13 13 N 1.34263 * 107.41677 * 179.87400 * 12 11 9 14 14 H 0.96999 * 125.75268 * 180.14813 * 13 12 11 15 15 N 1.39929 * 108.48897 * 0.39618 * 13 12 11 16 16 C 1.30449 * 108.90274 * 359.75192 * 15 13 12 17 17 C 1.50698 * 125.99217 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.46966 * 241.24817 * 17 16 15 19 19 C 1.53000 * 109.47139 * 1.24659 * 17 16 15 20 20 C 1.53004 * 109.47075 * 121.24757 * 17 16 15 21 21 N 1.46499 * 109.47079 * 120.00388 * 2 1 3 22 22 C 1.36931 * 120.00011 * 274.99774 * 21 2 1 23 23 H 1.08001 * 120.00289 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99808 * 180.02562 * 22 21 2 25 25 N 1.31622 * 120.00252 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99967 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47109 * 89.99554 * 26 24 22 28 28 H 1.48503 * 109.47042 * 209.99684 * 26 24 22 29 29 H 1.48502 * 109.47220 * 329.99582 * 26 24 22 30 30 H 1.09000 * 109.47262 * 59.99047 * 1 2 3 31 31 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46850 * 299.99519 * 1 2 3 33 33 H 1.09000 * 109.47273 * 55.00095 * 4 2 1 34 34 H 1.09003 * 109.47051 * 294.99615 * 4 2 1 35 35 H 1.08999 * 109.47065 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.46899 * 300.00020 * 7 5 4 37 37 H 1.08997 * 109.47024 * 59.99808 * 7 5 4 38 38 H 0.96999 * 119.99463 * 334.99684 * 8 5 4 39 39 H 1.08006 * 126.29298 * 0.03016 * 12 11 9 40 40 H 1.08998 * 109.47531 * 68.38236 * 18 17 16 41 41 H 1.09000 * 109.47277 * 188.37927 * 18 17 16 42 42 H 1.09001 * 109.47833 * 308.38075 * 18 17 16 43 43 H 1.09008 * 109.46895 * 60.00074 * 19 17 16 44 44 H 1.08995 * 109.47140 * 179.97438 * 19 17 16 45 45 H 1.08996 * 109.47066 * 300.00581 * 19 17 16 46 46 H 1.09000 * 109.46952 * 51.72354 * 20 17 16 47 47 H 1.09001 * 109.46902 * 171.72175 * 20 17 16 48 48 H 1.08997 * 109.46932 * 291.72197 * 20 17 16 49 49 H 0.97009 * 119.99834 * 95.00372 * 21 2 1 50 50 H 0.96991 * 119.99896 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9953 -0.9922 -0.3870 7 6 4.0851 -1.4381 -2.4927 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2136 -1.0867 10 8 5.9376 0.4321 -0.5719 11 6 5.5469 2.6251 -1.2670 12 6 4.8081 3.6015 -1.9044 13 7 5.5141 4.7420 -1.8458 14 1 5.2398 5.5977 -2.2111 15 7 6.7147 4.4868 -1.1739 16 6 6.7448 3.2302 -0.8250 17 6 7.8611 2.5443 -0.0805 18 6 8.4389 1.4236 -0.9471 19 6 8.9600 3.5596 0.2395 20 6 7.3178 1.9532 1.2220 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0077 2.3757 23 1 1.8927 1.0403 2.4242 24 6 2.6124 -0.6620 3.5089 25 7 2.9254 -1.9391 3.4497 26 14 2.7902 0.2695 5.1183 27 1 1.5225 0.1773 5.8862 28 1 3.8952 -0.3232 5.9138 29 1 3.0942 1.6951 4.8341 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6053 -0.2615 -2.1370 34 1 1.7516 -1.7714 -1.2057 35 1 5.1714 -1.3615 -2.5384 36 1 3.8000 -2.4817 -2.3598 37 1 3.6544 -1.0590 -3.4195 38 1 3.3284 1.4129 -1.9028 39 1 3.8391 3.4724 -2.3636 40 1 8.9572 1.8564 -1.8028 41 1 9.1408 0.8336 -0.3577 42 1 7.6306 0.7823 -1.2984 43 1 8.5483 4.3581 0.8569 44 1 9.7673 3.0636 0.7783 45 1 9.3470 3.9807 -0.6884 46 1 6.4405 1.3436 1.0061 47 1 8.0847 1.3343 1.6878 48 1 7.0413 2.7608 1.8998 49 1 2.2491 -1.6319 1.1525 50 1 3.2494 -2.3962 4.2415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135900708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:32 Heat of formation + Delta-G solvation = 32.684455 kcal Electronic energy + Delta-G solvation = -29178.805750 eV Core-core repulsion = 25435.547218 eV Total energy + Delta-G solvation = -3743.258533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53609 -39.09796 -37.01677 -36.26560 -34.31635 -32.17949 -31.28134 -30.94289 -29.52495 -28.53806 -26.91778 -26.80038 -26.27608 -23.64333 -23.25029 -22.63356 -21.02597 -19.99335 -19.65465 -18.44289 -18.08967 -17.16266 -16.26484 -15.66063 -15.14450 -14.85496 -14.69720 -14.47206 -14.08169 -13.91443 -13.78753 -13.68185 -13.38190 -12.94734 -12.73168 -12.63535 -12.12789 -12.00733 -11.92671 -11.73395 -11.69376 -11.57942 -11.25463 -11.18504 -10.94410 -10.88949 -10.78335 -10.73502 -10.55501 -10.38147 -10.24180 -10.17469 -9.83947 -9.56795 -9.50061 -9.22132 -8.82581 -8.78993 -8.48667 -6.86549 -5.67711 -2.95266 1.51767 2.27512 2.64379 3.48873 3.54706 3.56101 3.58090 3.78140 4.41229 4.58404 4.67177 4.98675 5.13851 5.25951 5.28144 5.39987 5.47063 5.51702 5.56277 5.61349 5.68817 5.75442 5.88244 5.93922 5.97464 5.99985 6.04845 6.13200 6.17441 6.19240 6.25477 6.31149 6.33982 6.38710 6.41202 6.48613 6.59157 6.61418 6.70115 6.80909 6.87934 6.95192 7.03981 7.09691 7.13353 7.53351 7.77452 7.95144 8.50657 8.74138 9.62229 10.19430 10.53618 11.54996 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004881 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.119512 B = 5735.475416 C = 6944.467561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.714 5.714 9 C 0.589 3.411 10 O -0.518 6.518 11 C -0.275 4.275 12 C 0.097 3.903 13 N -0.467 5.467 14 H 0.441 0.559 15 N -0.300 5.300 16 C 0.150 3.850 17 C 0.018 3.982 18 C -0.147 4.147 19 C -0.136 4.136 20 C -0.150 4.150 21 N -0.719 5.719 22 C -0.232 4.232 23 H 0.065 0.935 24 C -0.010 4.010 25 N -0.930 5.930 26 Si 0.900 3.100 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.388 0.612 39 H 0.183 0.817 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.043 0.957 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 10.038 -16.024 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.042 3.958 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.364 5.364 9 C 0.376 3.624 10 O -0.395 6.395 11 C -0.290 4.290 12 C -0.055 4.055 13 N -0.171 5.171 14 H 0.285 0.715 15 N -0.121 5.121 16 C -0.018 4.018 17 C 0.016 3.984 18 C -0.204 4.204 19 C -0.194 4.194 20 C -0.207 4.207 21 N -0.361 5.361 22 C -0.363 4.363 23 H 0.083 0.917 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.731 3.269 27 H -0.220 1.220 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.221 0.779 39 H 0.200 0.800 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.180 10.695 -15.484 19.519 hybrid contribution -1.032 0.405 0.500 1.216 sum 4.149 11.100 -14.984 19.104 Atomic orbital electron populations 1.22470 0.99718 1.00768 0.99640 1.20209 0.91404 0.95552 0.86624 0.93682 1.22167 0.93958 1.02147 0.98669 1.21004 0.94862 0.80058 0.99870 0.87468 1.22184 1.01598 1.00105 0.97980 1.45803 1.16174 1.11481 1.62982 1.17133 0.81758 0.85820 0.77670 1.90654 1.50355 1.55754 1.42784 1.20406 0.98533 0.95788 1.14260 1.23096 0.97684 0.86424 0.98333 1.46079 1.15011 1.10549 1.45470 0.71520 1.77147 1.01334 1.16959 1.16665 1.22476 0.94701 0.89944 0.94669 1.18999 0.90168 0.94181 0.95027 1.22097 1.02108 0.97833 0.98387 1.21833 0.97756 0.98349 1.01419 1.22112 1.03895 1.00831 0.93904 1.42377 1.77930 1.10537 1.05217 1.19121 1.36315 0.93579 0.87333 0.91653 1.24659 1.02237 0.95907 0.97818 1.69638 1.50972 1.08579 1.28705 0.86298 0.77178 0.78942 0.84450 1.21974 1.21778 1.20918 0.94836 0.93552 0.92996 0.92249 0.90703 0.92412 0.91883 0.93361 0.77868 0.80042 0.94151 0.92339 0.88768 0.92621 0.92384 0.92744 0.88458 0.92303 0.93798 0.78332 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.15 2.84 -67.93 -0.19 2.96 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.90 4.29 -26.73 -0.11 -2.01 16 5 C 0.15 2.24 2.52 -67.93 -0.17 2.07 16 6 H 0.11 2.19 7.05 -51.93 -0.37 1.82 16 7 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 8 N -0.71 -9.82 4.44 -54.88 -0.24 -10.07 16 9 C 0.59 9.42 7.18 -12.52 -0.09 9.33 16 10 O -0.52 -9.88 10.04 5.28 0.05 -9.82 16 11 C -0.27 -3.86 5.90 -105.06 -0.62 -4.48 16 12 C 0.10 0.96 11.52 -16.56 -0.19 0.77 16 13 N -0.47 -4.57 7.29 30.85 0.22 -4.34 16 14 H 0.44 2.58 8.96 -182.73 -1.64 0.94 16 15 N -0.30 -4.09 11.93 33.90 0.40 -3.69 16 16 C 0.15 2.24 5.64 -82.02 -0.46 1.78 16 17 C 0.02 0.27 0.75 -155.66 -0.12 0.16 16 18 C -0.15 -2.11 8.20 37.15 0.30 -1.80 16 19 C -0.14 -1.75 7.94 37.16 0.30 -1.46 16 20 C -0.15 -2.53 8.19 37.16 0.30 -2.23 16 21 N -0.72 -17.27 4.49 -53.43 -0.24 -17.51 16 22 C -0.23 -6.38 9.93 -15.06 -0.15 -6.53 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 26 Si 0.90 22.96 29.55 -169.99 -5.02 17.94 16 27 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.39 4.10 7.54 -40.82 -0.31 3.80 16 39 H 0.18 1.00 7.48 -52.48 -0.39 0.61 16 40 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.09 1.54 4.71 -51.93 -0.24 1.29 16 43 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 1.95 4.64 -51.93 -0.24 1.71 16 47 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 48 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 49 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -33.76 395.34 -8.52 -42.27 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -9.78 Total: 12.81 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.59 Total: -6.05 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.87 Total: -63.11 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.05 Total: -9.82 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.76 -8.52 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135900708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.959 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds