Wall clock time and date at job start Tue Mar 31 2020 13:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47143 * 2 1 4 4 N 1.28444 * 125.19173 * 89.08027 * 3 2 1 5 5 C 1.30859 * 110.93052 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.07279 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46937 * 265.02486 * 6 5 4 8 8 C 1.52994 * 109.47184 * 145.02127 * 6 5 4 9 9 C 1.39677 * 107.86161 * 0.26031 * 5 4 3 10 10 C 1.36598 * 125.19343 * 269.07924 * 3 2 1 11 11 C 1.47168 * 126.88171 * 0.03834 * 10 3 2 12 12 O 1.21628 * 120.00134 * 3.17266 * 11 10 3 13 13 N 1.34774 * 120.00015 * 183.16915 * 11 10 3 14 14 C 1.46497 * 119.99897 * 184.96771 * 13 11 10 15 15 H 1.08994 * 109.47393 * 35.00943 * 14 13 11 16 16 C 1.52993 * 109.47475 * 275.00415 * 14 13 11 17 17 C 1.53008 * 109.46969 * 155.00468 * 14 13 11 18 18 N 1.46501 * 109.46990 * 305.00199 * 17 14 13 19 19 C 1.46506 * 120.00127 * 270.00106 * 18 17 14 20 20 C 1.36934 * 120.00126 * 89.99850 * 18 17 14 21 21 H 1.08004 * 120.00012 * 22.51912 * 20 18 17 22 22 C 1.38814 * 120.00372 * 202.51286 * 20 18 17 23 23 N 1.31623 * 119.99816 * 15.12649 * 22 20 18 24 24 Si 1.86797 * 120.00374 * 195.12665 * 22 20 18 25 25 H 1.48498 * 109.47139 * 90.00003 * 24 22 20 26 26 H 1.48496 * 109.47063 * 210.00114 * 24 22 20 27 27 H 1.48498 * 109.47121 * 330.00213 * 24 22 20 28 28 H 1.09003 * 109.47057 * 300.00285 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99443 * 1 2 3 30 30 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46748 * 240.00034 * 2 1 3 32 32 H 1.08998 * 109.47089 * 119.99825 * 2 1 3 33 33 H 1.08999 * 109.46905 * 25.01704 * 6 5 4 34 34 H 1.08999 * 109.46980 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47068 * 59.99285 * 7 6 5 36 36 H 1.08999 * 109.46685 * 299.99353 * 7 6 5 37 37 H 1.09010 * 109.46960 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47768 * 299.99842 * 8 6 5 39 39 H 1.09004 * 109.47335 * 60.00411 * 8 6 5 40 40 H 1.08002 * 127.32020 * 179.69732 * 9 5 4 41 41 H 0.97003 * 120.00235 * 4.97164 * 13 11 10 42 42 H 1.08995 * 109.47700 * 59.99764 * 16 14 13 43 43 H 1.09004 * 109.47319 * 180.02562 * 16 14 13 44 44 H 1.09004 * 109.47228 * 300.00104 * 16 14 13 45 45 H 1.08998 * 109.47260 * 64.99650 * 17 14 13 46 46 H 1.08998 * 109.47158 * 185.00422 * 17 14 13 47 47 H 1.08999 * 109.47245 * 95.02248 * 19 18 17 48 48 H 1.09001 * 109.47063 * 215.02651 * 19 18 17 49 49 H 1.08999 * 109.46725 * 335.02521 * 19 18 17 50 50 H 0.97001 * 120.00490 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2492 2.0847 1.0495 5 6 2.6763 3.2789 0.7272 6 6 3.0488 4.3776 1.6891 7 6 1.8480 5.3029 1.8962 8 6 4.2189 5.1807 1.1176 9 6 2.7206 3.3563 -0.6667 10 6 2.2977 2.1174 -1.1161 11 6 2.1672 1.6832 -2.5162 12 8 1.7194 0.5816 -2.7721 13 7 2.5437 2.5061 -3.5149 14 6 2.3136 2.1191 -4.9090 15 1 1.3799 1.5616 -4.9820 16 6 3.4703 1.2423 -5.3925 17 6 2.2271 3.3747 -5.7792 18 7 1.1983 4.2699 -5.2439 19 6 -0.1872 4.1522 -5.7052 20 6 1.5317 5.2165 -4.3123 21 1 2.5527 5.5595 -4.2324 22 6 0.5574 5.7355 -3.4707 23 7 -0.6032 5.1259 -3.3530 24 14 0.8933 7.2989 -2.5052 25 1 0.4743 8.4760 -3.3078 26 1 0.1278 7.2692 -1.2331 27 1 2.3450 7.3944 -2.2072 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3400 3.9410 2.6444 34 1 2.1172 6.0974 2.5922 35 1 1.0143 4.7307 2.3032 36 1 1.5568 5.7396 0.9408 37 1 4.4880 5.9758 1.8131 38 1 5.0744 4.5216 0.9700 39 1 3.9277 5.6175 0.1623 40 1 3.0228 4.2022 -1.2663 41 1 2.9671 3.3546 -3.3107 42 1 3.5321 0.3479 -4.7727 43 1 3.2993 0.9548 -6.4300 44 1 4.4041 1.7999 -5.3196 45 1 3.1900 3.8855 -5.7768 46 1 1.9680 3.0925 -6.7996 47 1 -0.7474 3.5209 -5.0156 48 1 -0.6426 5.1418 -5.7436 49 1 -0.2023 3.7065 -6.6998 50 1 -1.2840 5.4882 -2.7646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:57 Heat of formation + Delta-G solvation = 46.113602 kcal Electronic energy + Delta-G solvation = -29626.739943 eV Core-core repulsion = 25884.063742 eV Total energy + Delta-G solvation = -3742.676201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18136 -38.91563 -36.39665 -35.79114 -34.05374 -33.39965 -31.70181 -30.67634 -29.38541 -28.93055 -26.96103 -26.20697 -25.61786 -23.94841 -23.33890 -22.14547 -21.38550 -20.24057 -19.66562 -18.81905 -17.40311 -16.67091 -15.95787 -15.53432 -15.35606 -14.91150 -14.45004 -14.34127 -14.07004 -13.88103 -13.69895 -13.58374 -13.10538 -13.00085 -12.93881 -12.72213 -12.25808 -12.22714 -11.94123 -11.89709 -11.87861 -11.42404 -11.35543 -11.28603 -11.03936 -10.97453 -10.95129 -10.81557 -10.70782 -10.44636 -10.29911 -10.18762 -10.05435 -9.84607 -9.40480 -8.71145 -8.58421 -8.48190 -8.26975 -6.80238 -5.76251 -3.22210 1.77735 2.74554 2.94029 3.32783 3.39946 3.43366 3.73436 3.95951 4.45177 4.63338 4.98312 5.07504 5.17343 5.21774 5.32871 5.35987 5.41944 5.47761 5.57129 5.60649 5.64114 5.77223 5.80440 5.85594 5.87316 5.95630 5.99302 6.01216 6.06959 6.13668 6.17838 6.22327 6.25262 6.29749 6.42257 6.45382 6.49532 6.56538 6.70521 6.84437 6.90910 7.15404 7.20609 7.31725 7.68771 7.74681 8.18519 8.33793 8.48628 8.82110 9.17347 9.82134 10.32248 11.27573 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.006725 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.327399 B = 4162.766653 C = 5937.175241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.261 5.261 4 N -0.285 5.285 5 C 0.026 3.974 6 C -0.005 4.005 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.171 4.171 10 C -0.022 4.022 11 C 0.593 3.407 12 O -0.564 6.564 13 N -0.669 5.669 14 C 0.121 3.879 15 H 0.077 0.923 16 C -0.160 4.160 17 C 0.141 3.859 18 N -0.596 5.596 19 C 0.162 3.838 20 C -0.263 4.263 21 H 0.066 0.934 22 C 0.014 3.986 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.158 0.842 41 H 0.407 0.593 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.029 0.971 48 H 0.040 0.960 49 H -0.002 1.002 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 -5.324 4.996 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.048 5.048 4 N -0.118 5.118 5 C -0.131 4.131 6 C -0.025 4.025 7 C -0.202 4.202 8 C -0.203 4.203 9 C -0.199 4.199 10 C -0.149 4.149 11 C 0.378 3.622 12 O -0.445 6.445 13 N -0.317 5.317 14 C 0.013 3.987 15 H 0.095 0.905 16 C -0.219 4.219 17 C 0.013 3.987 18 N -0.318 5.318 19 C 0.017 3.983 20 C -0.392 4.392 21 H 0.084 0.916 22 C -0.186 4.186 23 N -0.536 5.536 24 Si 0.720 3.280 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.201 1.201 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.176 0.824 41 H 0.243 0.757 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.759 -6.869 5.769 11.232 hybrid contribution 0.157 1.758 0.063 1.766 sum 6.916 -5.111 5.831 10.391 Atomic orbital electron populations 1.22064 0.93724 1.02911 1.03367 1.22042 0.96129 0.76943 1.04976 1.45615 1.45390 1.12110 1.01719 1.72975 1.19192 1.05659 1.13931 1.21815 1.04562 0.93118 0.93613 1.19342 0.95749 0.91397 0.96001 1.21834 0.97359 0.98748 1.02255 1.21838 0.97239 0.99539 1.01636 1.22075 1.06509 0.96793 0.94562 1.21469 1.09881 0.93675 0.89924 1.16812 0.77826 0.84454 0.83065 1.90683 1.47987 1.21237 1.84628 1.45419 1.59601 1.21525 1.05175 1.21896 0.97675 0.98015 0.81066 0.90492 1.22161 0.98848 1.00041 1.00858 1.21210 0.93691 0.89149 0.94664 1.43879 1.04292 1.36422 1.47253 1.20784 0.85120 0.99772 0.92582 1.19027 0.95093 1.14081 1.11010 0.91630 1.24931 0.97081 0.98986 0.97625 1.70067 1.06119 1.38114 1.39272 0.86492 0.77875 0.84096 0.79584 1.21666 1.21585 1.20126 0.92216 0.91147 0.90605 0.86843 0.89192 0.90301 0.92355 0.92659 0.92049 0.92254 0.92491 0.91836 0.82414 0.75676 0.92829 0.92177 0.92951 0.93229 0.92823 0.95228 0.94158 0.98354 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.12 1.77 6.51 -4.04 -0.03 1.75 16 3 N -0.26 -4.69 3.35 -57.14 -0.19 -4.88 16 4 N -0.29 -5.13 11.90 33.64 0.40 -4.73 16 5 C 0.03 0.44 6.13 -82.47 -0.51 -0.06 16 6 C 0.00 -0.07 3.38 -91.77 -0.31 -0.38 16 7 C -0.14 -2.06 9.18 37.16 0.34 -1.72 16 8 C -0.14 -1.79 8.79 37.15 0.33 -1.46 16 9 C -0.17 -3.15 9.65 -38.98 -0.38 -3.53 16 10 C -0.02 -0.42 6.96 -82.06 -0.57 -0.99 16 11 C 0.59 12.02 7.75 -12.64 -0.10 11.92 16 12 O -0.56 -12.08 14.38 5.25 0.08 -12.00 16 13 N -0.67 -12.85 4.47 -54.97 -0.25 -13.09 16 14 C 0.12 2.20 2.84 -67.93 -0.19 2.01 16 15 H 0.08 1.60 7.65 -51.93 -0.40 1.21 16 16 C -0.16 -2.35 9.48 37.15 0.35 -2.00 16 17 C 0.14 2.62 5.36 -4.04 -0.02 2.60 16 18 N -0.60 -13.73 2.81 -181.11 -0.51 -14.24 16 19 C 0.16 3.85 9.03 59.85 0.54 4.39 16 20 C -0.26 -6.47 7.99 -15.06 -0.12 -6.59 16 21 H 0.07 1.56 7.86 -52.48 -0.41 1.15 16 22 C 0.01 0.36 5.06 -17.43 -0.09 0.27 16 23 N -0.89 -24.88 10.80 55.49 0.60 -24.28 16 24 Si 0.89 20.61 29.58 -169.99 -5.03 15.58 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 1.74 6.33 -51.93 -0.33 1.42 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.85 7.37 -51.93 -0.38 0.47 16 40 H 0.16 2.83 7.07 -52.49 -0.37 2.46 16 41 H 0.41 7.77 6.45 -40.82 -0.26 7.51 16 42 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 46 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 47 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 48 H 0.04 1.03 7.36 -51.93 -0.38 0.64 16 49 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -29.84 402.26 -7.99 -37.83 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.78 Total: 9.51 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.37 Total: 4.25 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.05 Total: -61.23 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.84 -7.99 -37.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.942 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds