Wall clock time and date at job start Tue Mar 31 2020 13:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47024 * 2 1 4 4 N 1.28446 * 125.18632 * 264.28538 * 3 2 1 5 5 C 1.30868 * 110.92586 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.07332 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47320 * 94.96876 * 6 5 4 8 8 C 1.52998 * 109.47369 * 214.97656 * 6 5 4 9 9 C 1.39675 * 107.85876 * 359.76785 * 5 4 3 10 10 C 1.36594 * 125.19315 * 84.30460 * 3 2 1 11 11 C 1.47168 * 126.88286 * 359.94576 * 10 3 2 12 12 O 1.21632 * 120.00020 * 5.48760 * 11 10 3 13 13 N 1.34775 * 120.00254 * 185.48306 * 11 10 3 14 14 C 1.46493 * 120.00071 * 174.54878 * 13 11 10 15 15 H 1.08996 * 109.47681 * 325.28306 * 14 13 11 16 16 C 1.53008 * 109.46861 * 85.28035 * 14 13 11 17 17 C 1.53001 * 109.47404 * 205.27696 * 14 13 11 18 18 N 1.46495 * 109.46877 * 54.99782 * 17 14 13 19 19 C 1.46503 * 120.00404 * 270.00443 * 18 17 14 20 20 C 1.36942 * 119.99746 * 90.00577 * 18 17 14 21 21 H 1.08001 * 120.00018 * 21.00883 * 20 18 17 22 22 C 1.38815 * 119.99948 * 201.01295 * 20 18 17 23 23 N 1.31615 * 120.00134 * 10.17427 * 22 20 18 24 24 Si 1.86802 * 119.99905 * 190.17460 * 22 20 18 25 25 H 1.48495 * 109.47116 * 59.99624 * 24 22 20 26 26 H 1.48499 * 109.46878 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46733 * 299.99675 * 24 22 20 28 28 H 1.09000 * 109.47051 * 60.00045 * 1 2 3 29 29 H 1.08995 * 109.46925 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46966 * 300.00507 * 1 2 3 31 31 H 1.09001 * 109.47232 * 239.99973 * 2 1 3 32 32 H 1.08996 * 109.46674 * 119.99674 * 2 1 3 33 33 H 1.09007 * 109.46617 * 334.97067 * 6 5 4 34 34 H 1.08996 * 109.46977 * 300.00780 * 7 6 5 35 35 H 1.09002 * 109.46581 * 60.00028 * 7 6 5 36 36 H 1.08992 * 109.47313 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47491 * 59.99200 * 8 6 5 38 38 H 1.08992 * 109.47219 * 179.97438 * 8 6 5 39 39 H 1.09008 * 109.46388 * 299.99697 * 8 6 5 40 40 H 1.08000 * 127.31935 * 180.23591 * 9 5 4 41 41 H 0.96998 * 119.99359 * 354.82757 * 13 11 10 42 42 H 1.08994 * 109.47622 * 59.99960 * 16 14 13 43 43 H 1.09001 * 109.47007 * 180.02562 * 16 14 13 44 44 H 1.08997 * 109.47079 * 299.99645 * 16 14 13 45 45 H 1.08995 * 109.47182 * 175.00623 * 17 14 13 46 46 H 1.09000 * 109.46614 * 295.00315 * 17 14 13 47 47 H 1.08997 * 109.47281 * 95.93418 * 19 18 17 48 48 H 1.08997 * 109.46579 * 215.93202 * 19 18 17 49 49 H 1.09003 * 109.46891 * 335.92747 * 19 18 17 50 50 H 0.96998 * 119.99874 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.3636 2.0442 -1.0445 5 6 2.7566 3.2506 -0.7237 6 6 3.2333 4.3125 -1.6809 7 6 2.0641 5.2272 -2.0513 8 6 4.3371 5.1387 -1.0177 9 6 2.6503 3.3812 0.6628 10 6 2.1763 2.1604 1.1108 11 6 1.8933 1.7801 2.5040 12 8 1.5679 0.6384 2.7686 13 7 1.9947 2.6968 3.4867 14 6 1.5987 2.3516 4.8542 15 1 0.7500 1.6683 4.8252 16 6 2.7713 1.6781 5.5701 17 6 1.2039 3.6235 5.6074 18 7 0.1624 4.3310 4.8586 19 6 0.5333 5.3332 3.8564 20 6 -1.1580 4.0556 5.0954 21 1 -1.4553 3.5972 6.0270 22 6 -2.1142 4.3657 4.1381 23 7 -1.7414 4.7355 2.9312 24 14 -3.9301 4.2579 4.5627 25 1 -4.2320 5.1832 5.6842 26 1 -4.7391 4.6364 3.3764 27 1 -4.2627 2.8676 4.9649 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.6246 3.8401 -2.5820 34 1 1.2778 4.6386 -2.5237 35 1 1.6727 5.6995 -1.1502 36 1 2.4087 5.9950 -2.7439 37 1 5.1700 4.4870 -0.7539 38 1 4.6821 5.9064 -1.7102 39 1 3.9457 5.6109 -0.1166 40 1 2.8892 4.2495 1.2590 41 1 2.3262 3.5864 3.2877 42 1 3.6201 2.3613 5.5992 43 1 2.4765 1.4208 6.5874 44 1 3.0525 0.7720 5.0336 45 1 0.8254 3.3585 6.5946 46 1 2.0764 4.2682 5.7138 47 1 0.5453 4.8723 2.8687 48 1 -0.1930 6.1459 3.8693 49 1 1.5235 5.7271 4.0857 50 1 -2.4096 4.9525 2.2624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:01 Heat of formation + Delta-G solvation = 48.367707 kcal Electronic energy + Delta-G solvation = -29256.810383 eV Core-core repulsion = 25514.231927 eV Total energy + Delta-G solvation = -3742.578456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30166 -39.04260 -36.46559 -35.88038 -34.12730 -33.45952 -31.74030 -30.70627 -29.53694 -28.99130 -27.06486 -26.18508 -25.62736 -24.02327 -23.43592 -22.25346 -21.33274 -20.32805 -19.85468 -18.91313 -17.44041 -16.79695 -16.09858 -15.59455 -15.40164 -14.91699 -14.60621 -14.41062 -14.12588 -13.94092 -13.75399 -13.58555 -13.23227 -13.09399 -13.01000 -12.77720 -12.33627 -12.16660 -12.00166 -11.98344 -11.91766 -11.44324 -11.36681 -11.14451 -11.08940 -11.05489 -10.99957 -10.84026 -10.80396 -10.56471 -10.30859 -10.21663 -10.00212 -9.85541 -9.52401 -8.84723 -8.60780 -8.59409 -8.38352 -6.78718 -5.71908 -3.17333 1.65586 2.63645 2.82711 3.38753 3.44302 3.44400 3.59926 3.83023 4.49691 4.53298 4.87140 4.99894 5.08513 5.14567 5.25474 5.33309 5.38973 5.46123 5.47978 5.51025 5.65844 5.70193 5.74086 5.76074 5.80454 5.85547 5.93535 5.96245 5.96916 6.06333 6.08098 6.11257 6.21027 6.32357 6.35407 6.43833 6.45166 6.50818 6.63183 6.76168 6.82593 7.04460 7.09161 7.35936 7.68995 7.80394 7.99329 8.37198 8.37498 8.66873 9.22796 9.85144 10.31984 11.32281 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.004688 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.000980 B = 5970.995205 C = 6389.327923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 N -0.257 5.257 4 N -0.284 5.284 5 C 0.029 3.971 6 C -0.006 4.006 7 C -0.142 4.142 8 C -0.143 4.143 9 C -0.180 4.180 10 C -0.020 4.020 11 C 0.593 3.407 12 O -0.554 6.554 13 N -0.681 5.681 14 C 0.119 3.881 15 H 0.086 0.914 16 C -0.159 4.159 17 C 0.143 3.857 18 N -0.598 5.598 19 C 0.162 3.838 20 C -0.256 4.256 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.155 0.845 41 H 0.398 0.602 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.034 0.966 48 H 0.045 0.955 49 H -0.007 1.007 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.082 -2.419 -5.813 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.001 4.001 3 N -0.044 5.044 4 N -0.117 5.117 5 C -0.128 4.128 6 C -0.026 4.026 7 C -0.201 4.201 8 C -0.201 4.201 9 C -0.209 4.209 10 C -0.149 4.149 11 C 0.378 3.622 12 O -0.433 6.433 13 N -0.329 5.329 14 C 0.012 3.988 15 H 0.104 0.896 16 C -0.218 4.218 17 C 0.014 3.986 18 N -0.320 5.320 19 C 0.018 3.982 20 C -0.386 4.386 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.172 0.828 41 H 0.233 0.767 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.011 0.989 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.481 -4.029 -6.643 13.863 hybrid contribution -1.006 0.792 0.633 1.429 sum 10.475 -3.237 -6.010 12.503 Atomic orbital electron populations 1.22082 0.93455 1.03119 1.03574 1.22063 0.96225 0.76769 1.05010 1.45654 1.44567 1.12148 1.02073 1.73018 1.17760 1.07018 1.13859 1.21812 1.04512 0.92866 0.93565 1.19360 0.95701 0.91884 0.95669 1.21817 0.97549 0.98834 1.01859 1.21819 0.97731 0.99457 1.01054 1.21963 1.07040 0.96957 0.94926 1.21483 1.09938 0.93211 0.90246 1.16822 0.77256 0.85222 0.82865 1.90715 1.49355 1.19454 1.83782 1.45496 1.64375 1.14743 1.08312 1.21961 0.96273 1.00165 0.80395 0.89589 1.22155 0.98671 1.00599 1.00422 1.21201 0.91830 0.90646 0.94910 1.43897 1.01646 1.41916 1.44567 1.20891 0.93540 0.91721 0.92092 1.19131 0.82372 1.37774 0.99279 0.91429 1.24976 0.98077 1.01281 0.95013 1.70040 1.31979 1.50390 1.02470 0.86368 0.85363 0.77910 0.77070 1.21108 1.21723 1.21048 0.92202 0.90471 0.90913 0.88893 0.87034 0.90310 0.92655 0.91868 0.92357 0.92608 0.92206 0.91939 0.82756 0.76719 0.93102 0.91988 0.92831 0.92118 0.93895 0.94803 0.93648 0.98903 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.12 1.74 6.41 -4.04 -0.03 1.71 16 3 N -0.26 -4.41 3.35 -57.13 -0.19 -4.60 16 4 N -0.28 -4.81 11.90 33.64 0.40 -4.41 16 5 C 0.03 0.45 6.13 -82.47 -0.51 -0.05 16 6 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 7 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 8 C -0.14 -1.42 8.79 37.16 0.33 -1.10 16 9 C -0.18 -2.91 9.65 -38.98 -0.38 -3.29 16 10 C -0.02 -0.37 6.96 -82.06 -0.57 -0.94 16 11 C 0.59 11.49 7.75 -12.64 -0.10 11.40 16 12 O -0.55 -11.63 14.38 5.25 0.08 -11.56 16 13 N -0.68 -12.33 4.42 -54.96 -0.24 -12.57 16 14 C 0.12 2.17 2.84 -67.93 -0.19 1.97 16 15 H 0.09 1.87 7.65 -51.93 -0.40 1.48 16 16 C -0.16 -2.32 9.49 37.16 0.35 -1.97 16 17 C 0.14 2.67 5.33 -4.04 -0.02 2.65 16 18 N -0.60 -14.02 2.78 -181.12 -0.50 -14.53 16 19 C 0.16 3.70 7.55 59.85 0.45 4.15 16 20 C -0.26 -6.81 9.70 -15.06 -0.15 -6.96 16 21 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 22 C 0.00 0.14 5.17 -17.43 -0.09 0.05 16 23 N -0.90 -25.71 10.43 55.49 0.58 -25.13 16 24 Si 0.90 21.92 29.57 -169.99 -5.03 16.89 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 1.67 6.54 -51.93 -0.34 1.33 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.63 7.37 -51.92 -0.38 0.25 16 40 H 0.15 2.20 7.05 -52.49 -0.37 1.83 16 41 H 0.40 6.73 6.23 -40.82 -0.25 6.47 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 45 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 46 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 47 H 0.03 0.83 6.98 -51.93 -0.36 0.47 16 48 H 0.04 1.15 7.18 -51.93 -0.37 0.78 16 49 H -0.01 -0.15 7.83 -51.93 -0.41 -0.55 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -31.33 401.29 -8.09 -39.42 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.75 Total: 6.61 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.48 Total: 3.82 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.04 Total: -61.23 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.33 -8.09 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.786 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds