Wall clock time and date at job start Tue Mar 31 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.49884 * 2 1 4 4 C 1.53049 * 109.49906 * 239.90374 * 2 1 3 5 5 C 1.53036 * 109.53858 * 178.68097 * 4 2 1 6 6 C 1.52769 * 109.38409 * 61.24125 * 5 4 2 7 7 H 1.08996 * 109.43074 * 65.42234 * 6 5 4 8 8 C 1.52991 * 109.50831 * 185.70564 * 6 5 4 9 9 N 1.46498 * 109.46914 * 179.84857 * 8 6 5 10 10 C 1.34785 * 120.00080 * 180.02562 * 9 8 6 11 11 O 1.21276 * 119.99847 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.46650 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46704 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46959 * 180.02562 * 14 13 12 16 16 C 1.53004 * 117.49310 * 243.61889 * 15 14 13 17 17 C 1.52999 * 117.49775 * 174.99919 * 15 14 13 18 18 N 1.46930 * 109.00604 * 305.58685 * 6 5 4 19 19 C 1.36930 * 120.63009 * 233.58328 * 18 6 5 20 20 H 1.08007 * 119.99974 * 29.59770 * 19 18 6 21 21 C 1.38816 * 120.00192 * 209.59743 * 19 18 6 22 22 N 1.31624 * 119.99990 * 197.18300 * 21 19 18 23 23 Si 1.86793 * 119.99857 * 17.17866 * 21 19 18 24 24 H 1.48496 * 109.47251 * 265.52201 * 23 21 19 25 25 H 1.48508 * 109.47238 * 25.52046 * 23 21 19 26 26 H 1.48500 * 109.47105 * 145.51843 * 23 21 19 27 27 C 1.46928 * 118.74065 * 53.30841 * 18 6 5 28 28 H 1.08998 * 109.46690 * 299.93333 * 1 2 3 29 29 H 1.09000 * 109.46844 * 59.93677 * 1 2 3 30 30 H 1.08998 * 109.46526 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47628 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46840 * 300.06248 * 3 2 1 33 33 H 1.08999 * 109.47525 * 60.06139 * 3 2 1 34 34 H 1.09002 * 109.45291 * 298.70329 * 4 2 1 35 35 H 1.08997 * 109.45950 * 58.65735 * 4 2 1 36 36 H 1.08996 * 109.49582 * 181.31449 * 5 4 2 37 37 H 1.08997 * 109.50193 * 301.41398 * 5 4 2 38 38 H 1.09001 * 109.47373 * 299.84452 * 8 6 5 39 39 H 1.08994 * 109.47569 * 59.84959 * 8 6 5 40 40 H 0.97000 * 120.00668 * 0.02562 * 9 8 6 41 41 H 1.08997 * 109.46982 * 299.99301 * 12 10 9 42 42 H 1.08998 * 109.46711 * 59.99897 * 12 10 9 43 43 H 1.08997 * 109.46933 * 299.99424 * 13 12 10 44 44 H 1.08994 * 109.47570 * 59.99986 * 13 12 10 45 45 H 1.09006 * 109.46956 * 299.99139 * 14 13 12 46 46 H 1.08991 * 109.47528 * 60.00062 * 14 13 12 47 47 H 1.08996 * 115.55196 * 29.31959 * 15 14 13 48 48 H 1.08991 * 117.50213 * 359.97438 * 16 15 14 49 49 H 1.09000 * 117.49710 * 145.02252 * 16 15 14 50 50 H 1.09009 * 117.49617 * 214.97298 * 17 15 14 51 51 H 1.08996 * 117.50102 * 359.97438 * 17 15 14 52 52 H 0.97001 * 119.99839 * 359.97438 * 22 21 19 53 53 H 1.09000 * 109.58575 * 66.42541 * 27 18 6 54 54 H 1.09000 * 109.58779 * 186.71532 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0409 -0.7235 -1.2482 5 6 3.5709 -0.6953 -1.2659 6 6 4.1056 -1.4216 -0.0328 7 1 3.8414 -2.4774 -0.0909 8 6 5.6271 -1.2732 0.0277 9 7 6.1386 -1.9669 1.2123 10 6 7.4610 -1.9701 1.4729 11 8 8.2275 -1.3992 0.7263 12 6 7.9872 -2.6842 2.6912 13 6 9.5088 -2.5357 2.7518 14 6 10.0431 -3.2612 3.9884 15 6 11.5646 -3.1123 4.0494 16 6 12.4043 -4.3861 3.9340 17 6 12.2803 -3.6709 5.2809 18 7 3.5047 -0.8288 1.1698 19 6 4.2936 -0.3778 2.1941 20 1 5.2862 -0.0053 1.9875 21 6 3.8179 -0.3995 3.4980 22 7 4.4075 0.3244 4.4258 23 14 2.3407 -1.4557 3.9357 24 1 1.1058 -0.6342 3.8630 25 1 2.2399 -2.5868 2.9787 26 1 2.5022 -1.9859 5.3134 27 6 2.0414 -0.7234 1.2498 28 1 -0.3632 0.5128 0.8906 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1307 1.4418 -0.0005 32 1 1.6767 1.9565 -0.8895 33 1 1.6785 1.9560 0.8905 34 1 1.6967 -1.7576 -1.2348 35 1 1.6582 -0.2252 -2.1389 36 1 3.9334 -1.1903 -2.1668 37 1 3.9160 0.3385 -1.2543 38 1 6.0706 -1.7085 -0.8679 39 1 5.8872 -0.2163 0.0850 40 1 5.5257 -2.4239 1.8093 41 1 7.5435 -2.2497 3.5870 42 1 7.7276 -3.7412 2.6332 43 1 9.9522 -2.9706 1.8561 44 1 9.7688 -1.4788 2.8096 45 1 9.5997 -2.8267 4.8844 46 1 9.7832 -4.3181 3.9302 47 1 11.9662 -2.2024 3.6034 48 1 11.8727 -5.3302 3.8152 49 1 13.3585 -4.3144 3.4121 50 1 13.1531 -3.1286 5.6449 51 1 11.6673 -4.1441 6.0478 52 1 5.1748 0.8726 4.1985 53 1 1.6053 -1.7212 1.2985 54 1 1.7638 -0.1594 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099188607.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:32 Heat of formation + Delta-G solvation = -34.701035 kcal Electronic energy + Delta-G solvation = -28878.396288 eV Core-core repulsion = 25235.756045 eV Total energy + Delta-G solvation = -3642.640243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.00796 -40.12633 -38.58093 -36.74761 -35.04596 -34.70526 -33.74521 -32.43298 -29.83473 -28.23938 -28.11295 -27.00543 -25.12345 -24.06623 -23.28074 -22.94082 -21.56106 -21.37638 -20.84842 -20.10310 -18.83075 -17.79824 -17.20292 -16.89928 -16.65629 -16.39647 -16.21048 -15.82391 -15.29091 -15.15686 -15.08170 -14.92439 -14.75675 -14.39093 -14.14758 -13.96473 -13.52450 -13.42664 -13.22614 -12.94002 -12.88652 -12.82282 -12.65243 -12.44625 -12.36093 -12.35021 -12.12929 -12.03128 -11.97635 -11.80237 -11.62912 -11.36808 -11.27221 -11.13611 -11.03195 -10.95326 -10.75286 -10.67327 -10.51691 -9.84976 -8.88217 -8.34711 -5.39120 1.48793 1.57795 1.74504 1.75724 2.44024 2.62554 2.93020 3.17218 3.39600 3.68410 3.85877 3.87745 3.92212 4.02259 4.04653 4.06876 4.16945 4.22662 4.25270 4.34692 4.42152 4.43395 4.53605 4.62993 4.69374 4.73282 4.78797 4.79450 4.81974 4.84734 4.87332 4.91761 4.94528 4.96518 5.01296 5.07966 5.08031 5.09921 5.16568 5.22549 5.25834 5.27063 5.32617 5.42416 5.44569 5.46260 5.52957 5.65816 5.71680 6.01396 6.35275 6.73293 7.03315 7.37964 7.67929 8.21340 9.00937 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.003158 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.774445 B = 8864.572600 C = 9895.129466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.090 4.090 5 C -0.128 4.128 6 C 0.163 3.837 7 H 0.052 0.948 8 C 0.141 3.859 9 N -0.695 5.695 10 C 0.501 3.499 11 O -0.602 6.602 12 C -0.133 4.133 13 C -0.088 4.088 14 C -0.082 4.082 15 C -0.169 4.169 16 C -0.176 4.176 17 C -0.180 4.180 18 N -0.610 5.610 19 C -0.298 4.298 20 H 0.041 0.959 21 C -0.064 4.064 22 N -0.962 5.962 23 Si 1.095 2.905 24 H -0.292 1.292 25 H -0.252 1.252 26 H -0.318 1.318 27 C 0.132 3.868 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.411 0.589 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.242 0.758 53 H 0.038 0.962 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -10.063 -7.167 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 C -0.179 4.179 4 C -0.127 4.127 5 C -0.167 4.167 6 C 0.058 3.942 7 H 0.070 0.930 8 C 0.017 3.983 9 N -0.345 5.345 10 C 0.289 3.711 11 O -0.485 6.485 12 C -0.173 4.173 13 C -0.126 4.126 14 C -0.120 4.120 15 C -0.187 4.187 16 C -0.213 4.213 17 C -0.217 4.217 18 N -0.336 5.336 19 C -0.428 4.428 20 H 0.059 0.941 21 C -0.258 4.258 22 N -0.605 5.605 23 Si 0.924 3.076 24 H -0.220 1.220 25 H -0.177 1.177 26 H -0.248 1.248 27 C 0.007 3.993 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.247 0.753 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.117 0.883 52 H 0.051 0.949 53 H 0.056 0.944 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.145 -10.136 -6.488 12.089 hybrid contribution 1.032 1.263 -0.442 1.690 sum 2.177 -8.873 -6.930 11.467 Atomic orbital electron populations 1.21792 0.93324 1.02292 1.01877 1.21039 0.95895 0.95466 0.96310 1.21655 1.00461 0.95705 1.00030 1.21401 0.94246 1.00505 0.96582 1.21902 0.96938 1.00539 0.97366 1.20814 0.89747 0.96069 0.87597 0.93019 1.21175 0.94224 0.95471 0.87446 1.46021 1.07175 1.53801 1.27460 1.21236 0.82205 0.80328 0.87314 1.90594 1.57876 1.48027 1.51964 1.21665 0.97802 1.02527 0.95314 1.21170 0.92441 1.00190 0.98802 1.21137 0.92781 1.00971 0.97071 1.22327 0.94161 0.98431 1.03815 1.23115 1.01820 0.96004 1.00331 1.23046 1.02970 1.04166 0.91496 1.44453 1.01133 1.70815 1.17180 1.20023 0.99259 1.36661 0.86841 0.94084 1.27042 1.05747 1.01051 0.91994 1.71008 1.23415 1.29282 1.36815 0.83403 0.73395 0.76498 0.74298 1.22034 1.17668 1.24784 1.21526 0.83759 0.97365 0.96627 0.93785 0.91003 0.91694 0.94253 0.91845 0.95374 0.91253 0.90530 0.89903 0.93132 0.91123 0.95505 0.75265 0.89522 0.86469 0.91819 0.93827 0.91846 0.90329 0.88742 0.88095 0.88329 0.88279 0.88308 0.94860 0.94371 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.48 71.98 0.61 -2.72 16 2 C -0.09 -2.59 0.77 -52.10 -0.04 -2.63 16 3 C -0.12 -4.04 7.99 71.98 0.57 -3.47 16 4 C -0.09 -2.27 4.71 30.62 0.14 -2.13 16 5 C -0.13 -3.65 5.00 30.53 0.15 -3.49 16 6 C 0.16 5.59 2.99 44.83 0.13 5.73 16 7 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 8 C 0.14 5.28 4.42 86.38 0.38 5.66 16 9 N -0.70 -26.50 3.82 -463.07 -1.77 -28.27 16 10 C 0.50 19.46 7.83 87.66 0.69 20.14 16 11 O -0.60 -27.23 15.98 -3.02 -0.05 -27.28 16 12 C -0.13 -4.10 5.70 29.85 0.17 -3.93 16 13 C -0.09 -2.53 4.46 30.60 0.14 -2.40 16 14 C -0.08 -1.90 5.50 30.60 0.17 -1.73 16 15 C -0.17 -3.63 5.74 -10.79 -0.06 -3.70 16 16 C -0.18 -3.10 10.18 30.60 0.31 -2.79 16 17 C -0.18 -3.24 10.25 30.59 0.31 -2.92 16 18 N -0.61 -25.25 2.18 -676.01 -1.48 -26.73 16 19 C -0.30 -15.03 7.36 84.04 0.62 -14.41 16 20 H 0.04 2.37 5.97 -2.91 -0.02 2.35 16 21 C -0.06 -3.47 5.28 84.86 0.45 -3.02 16 22 N -0.96 -58.58 13.71 21.65 0.30 -58.29 16 23 Si 1.10 49.96 24.70 68.60 1.69 51.65 16 24 H -0.29 -13.01 6.74 99.48 0.67 -12.34 16 25 H -0.25 -10.10 6.32 99.48 0.63 -9.47 16 26 H -0.32 -15.21 7.11 99.48 0.71 -14.51 16 27 C 0.13 5.03 2.86 86.36 0.25 5.27 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.52 5.97 -2.39 -0.01 1.51 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.63 6.34 -2.39 -0.02 1.61 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 39 H 0.03 1.19 7.42 -2.39 -0.02 1.17 16 40 H 0.41 15.57 7.40 -92.71 -0.69 14.88 16 41 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 44 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 45 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.08 1.56 7.88 -2.39 -0.02 1.54 16 47 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 48 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 49 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 51 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.24 15.27 8.73 -92.71 -0.81 14.47 16 53 H 0.04 1.38 6.85 -2.39 -0.02 1.36 16 54 H 0.04 1.87 4.62 -2.39 -0.01 1.86 16 Total: -1.00 -65.93 403.82 3.71 -62.22 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.01 Total: 39.22 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.00 Total: -12.52 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -2.95 Total: -113.28 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 1.69 Total: 51.65 kcal Total: -65.93 3.71 -62.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099188607.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.519 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds