Wall clock time and date at job start Tue Mar 31 2020 14:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47067 * 2 1 4 4 C 1.52994 * 109.47456 * 239.99526 * 2 1 3 5 5 C 1.50705 * 109.46782 * 60.00391 * 4 2 1 6 6 H 1.07995 * 119.99999 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00127 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99913 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47289 * 59.99857 * 9 7 5 11 11 H 1.48498 * 109.47133 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47109 * 299.99986 * 9 7 5 13 13 C 1.53003 * 109.47005 * 119.99636 * 2 1 3 14 14 N 1.46500 * 109.47033 * 300.00236 * 13 2 1 15 15 C 1.34784 * 119.99770 * 180.02562 * 14 13 2 16 16 O 1.21584 * 120.00032 * 359.97438 * 15 14 13 17 17 N 1.34770 * 119.99949 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00273 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47125 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.01434 * 302.04665 * 19 18 17 21 21 C 1.54263 * 110.03081 * 63.49530 * 19 18 17 22 22 C 1.54889 * 104.19439 * 142.89373 * 21 19 18 23 23 C 1.54886 * 102.74847 * 322.05366 * 22 21 19 24 24 C 1.53880 * 110.02863 * 180.66006 * 19 18 17 25 25 H 1.09000 * 110.03319 * 121.43094 * 24 19 18 26 26 C 1.53004 * 110.03322 * 0.05027 * 24 19 18 27 27 C 1.53005 * 117.49589 * 241.64295 * 26 24 19 28 28 C 1.53000 * 117.49783 * 173.01925 * 26 24 19 29 29 H 1.08997 * 109.47092 * 299.99918 * 1 2 3 30 30 H 1.08995 * 109.46711 * 60.00205 * 1 2 3 31 31 H 1.08998 * 109.46645 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47182 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46773 * 299.99830 * 3 2 1 34 34 H 1.08999 * 109.46819 * 59.99362 * 3 2 1 35 35 H 1.09000 * 109.47253 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47321 * 300.00223 * 4 2 1 37 37 H 0.97001 * 120.00552 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47094 * 180.02562 * 13 2 1 39 39 H 1.08995 * 109.46989 * 60.00256 * 13 2 1 40 40 H 0.97000 * 120.00498 * 0.02562 * 14 13 2 41 41 H 0.97004 * 120.00339 * 359.72671 * 17 15 14 42 42 H 1.08999 * 109.47158 * 300.00656 * 18 17 15 43 43 H 1.08995 * 109.46590 * 60.00462 * 18 17 15 44 44 H 1.09000 * 110.48537 * 261.56759 * 21 19 18 45 45 H 1.09003 * 110.48807 * 24.21276 * 21 19 18 46 46 H 1.09005 * 110.75382 * 203.74252 * 22 21 19 47 47 H 1.09001 * 110.75746 * 80.37082 * 22 21 19 48 48 H 1.08999 * 110.48935 * 279.26728 * 23 22 21 49 49 H 1.09002 * 110.60094 * 156.67826 * 23 22 21 50 50 H 1.08996 * 115.54921 * 27.34360 * 26 24 19 51 51 H 1.08999 * 117.49735 * 359.97438 * 27 26 24 52 52 H 1.08999 * 117.49739 * 145.02182 * 27 26 24 53 53 H 1.08998 * 117.49788 * 214.97462 * 28 26 24 54 54 H 1.09000 * 117.49776 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4796 6 1 0.9166 0.8670 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2474 0.3978 -5.2571 10 1 1.7423 1.7979 -5.2577 11 1 1.7415 -0.3029 -6.4696 12 1 -0.2376 0.3978 -5.2567 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8776 -0.4907 3.6696 16 8 2.5767 -1.4792 3.7812 17 7 1.4288 0.1450 4.7700 18 6 1.7826 -0.3554 6.1006 19 6 1.1493 0.5402 7.1674 20 1 1.4849 1.5690 7.0379 21 6 -0.3887 0.4688 7.0721 22 6 -0.8634 0.5226 8.5454 23 6 0.2047 -0.3251 9.2799 24 6 1.5267 0.0353 8.5712 25 1 2.0446 0.8196 9.1233 26 6 2.4181 -1.2033 8.4607 27 6 1.8919 -2.5082 9.0620 28 6 3.0289 -1.7516 9.7519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1301 -0.7209 -1.2493 36 1 1.6768 -1.7489 -1.2491 37 1 2.8604 -1.8835 -4.7335 38 1 3.1300 -0.7208 1.2496 39 1 1.6767 -1.7488 1.2493 40 1 0.9936 0.7579 2.3564 41 1 0.8743 0.9360 4.6810 42 1 1.4129 -1.3743 6.2158 43 1 2.8665 -0.3471 6.2155 44 1 -0.7764 1.3217 6.5150 45 1 -0.6990 -0.4660 6.6051 46 1 -1.8513 0.0738 8.6496 47 1 -0.8631 1.5483 8.9142 48 1 -0.0097 -1.3881 9.1695 49 1 0.2510 -0.0537 10.3346 50 1 3.0159 -1.2727 7.5519 51 1 0.9110 -2.4840 9.5367 52 1 2.1436 -3.4363 8.5488 53 1 4.0285 -2.1820 9.6925 54 1 2.7961 -1.2295 10.6800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413560868.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:26 Heat of formation + Delta-G solvation = -47.401559 kcal Electronic energy + Delta-G solvation = -27770.258258 eV Core-core repulsion = 24127.067279 eV Total energy + Delta-G solvation = -3643.190979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.32943 -40.42983 -38.74182 -36.88299 -35.33431 -35.19928 -33.86982 -31.06378 -29.34732 -29.02326 -27.94218 -27.56924 -25.63253 -24.53360 -23.70273 -23.06472 -21.87253 -21.24701 -20.16679 -19.53678 -18.65326 -18.34465 -17.46163 -16.84557 -16.77157 -16.54913 -16.37813 -15.93863 -15.52540 -15.34275 -15.01507 -14.72704 -14.63613 -14.38860 -14.30026 -13.91868 -13.79681 -13.46800 -13.27925 -12.82232 -12.74324 -12.56550 -12.42871 -12.35627 -12.31059 -12.20964 -11.98603 -11.90998 -11.85315 -11.68808 -11.51579 -11.40252 -11.33712 -11.27216 -10.97383 -10.95433 -10.84755 -10.62073 -10.49392 -10.31866 -9.69046 -8.12394 -6.20378 1.43367 1.45733 1.52849 1.76869 2.19804 2.45552 2.93351 3.21735 3.35451 3.52835 3.74624 3.75410 3.99778 4.04504 4.11011 4.12393 4.18159 4.24733 4.35966 4.47160 4.52130 4.55887 4.65398 4.70934 4.75443 4.77655 4.79173 4.86305 4.91487 4.93816 4.98867 5.07728 5.09446 5.13181 5.13725 5.14253 5.21010 5.29723 5.33459 5.42032 5.42431 5.49160 5.51165 5.51849 5.55772 5.57143 5.59965 5.61900 5.82379 5.91235 6.05836 6.32320 6.94445 7.16611 7.47132 7.63612 8.99952 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.002052 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.417241 B =13643.677782 C =14205.040104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.162 3.838 14 N -0.724 5.724 15 C 0.696 3.304 16 O -0.644 6.644 17 N -0.730 5.730 18 C 0.150 3.850 19 C -0.088 4.088 20 H 0.092 0.908 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.048 4.048 25 H 0.087 0.913 26 C -0.169 4.169 27 C -0.192 4.192 28 C -0.176 4.176 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.070 0.930 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.259 0.741 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.410 0.590 41 H 0.410 0.590 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.099 0.901 51 H 0.115 0.885 52 H 0.080 0.920 53 H 0.088 0.912 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 8.590 29.645 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.037 3.963 14 N -0.381 5.381 15 C 0.395 3.605 16 O -0.526 6.526 17 N -0.387 5.387 18 C 0.027 3.973 19 C -0.107 4.107 20 H 0.110 0.890 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.168 4.168 24 C -0.066 4.066 25 H 0.105 0.895 26 C -0.187 4.187 27 C -0.229 4.229 28 C -0.213 4.213 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.247 0.753 41 H 0.247 0.753 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.117 0.883 51 H 0.133 0.867 52 H 0.099 0.901 53 H 0.107 0.893 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.902 7.594 29.630 31.357 hybrid contribution -0.036 0.142 -1.475 1.483 sum -6.938 7.736 28.155 30.011 Atomic orbital electron populations 1.21684 0.93524 1.00908 1.01657 1.20699 0.96740 0.96305 0.92591 1.21685 0.99848 0.94588 1.01660 1.18975 0.94269 0.94212 0.92395 1.21559 1.30431 1.12102 0.90999 0.90827 1.25980 0.95718 0.95905 1.02808 1.70120 1.38778 1.24983 1.24128 0.85572 0.78953 0.78730 0.78216 1.19094 1.21818 1.19106 1.21029 0.97328 0.94893 0.83042 1.45001 1.56202 1.33393 1.03455 1.16209 0.80183 0.82655 0.81427 1.90886 1.45039 1.29934 1.86751 1.45013 1.56539 1.32884 1.04267 1.21521 0.98801 0.97476 0.79539 1.21969 0.96194 0.99382 0.93176 0.88962 1.22454 0.93531 1.02099 0.97677 1.22465 0.98408 1.00526 0.94457 1.22761 0.93639 1.00906 0.99461 1.21245 0.95406 0.95310 0.94686 0.89507 1.22744 1.03101 0.95109 0.97700 1.23296 0.99709 0.95242 1.04611 1.22997 0.97704 1.04094 0.96531 0.91111 0.92496 0.94580 0.94567 0.92497 0.91110 0.99645 0.99648 0.93206 0.94108 0.94125 0.75259 0.75332 0.93070 0.92904 0.90290 0.92506 0.91272 0.90601 0.90593 0.90812 0.88329 0.86669 0.90092 0.89349 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.55 7.65 25.60 0.20 -27.35 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.16 5.99 4.56 86.38 0.39 6.38 16 14 N -0.72 -20.50 4.96 -478.53 -2.37 -22.87 16 15 C 0.70 21.31 8.57 179.05 1.53 22.85 16 16 O -0.64 -26.52 16.34 -3.98 -0.07 -26.58 16 17 N -0.73 -14.99 5.35 -478.53 -2.56 -17.55 16 18 C 0.15 2.91 3.53 86.38 0.30 3.22 16 19 C -0.09 -1.07 3.02 -10.07 -0.03 -1.10 16 20 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 21 C -0.12 -1.28 5.86 31.67 0.19 -1.10 16 22 C -0.12 -1.07 6.91 31.88 0.22 -0.85 16 23 C -0.13 -1.27 5.78 31.67 0.18 -1.09 16 24 C -0.05 -0.55 3.23 -10.07 -0.03 -0.58 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 C -0.17 -2.55 4.63 -10.79 -0.05 -2.60 16 27 C -0.19 -2.82 9.49 30.60 0.29 -2.53 16 28 C -0.18 -2.36 10.20 30.60 0.31 -2.05 16 29 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 30 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 34 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.41 8.71 6.18 -92.71 -0.57 8.14 16 41 H 0.41 5.55 8.22 -92.70 -0.76 4.79 16 42 H 0.05 1.20 7.47 -2.39 -0.02 1.18 16 43 H 0.05 1.19 6.55 -2.39 -0.02 1.17 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.80 7.83 -2.39 -0.02 0.78 16 46 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.08 0.84 5.03 -2.39 -0.01 0.83 16 49 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.10 1.89 5.23 -2.39 -0.01 1.88 16 51 H 0.12 1.40 5.42 -2.39 -0.01 1.39 16 52 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 53 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.48 405.38 2.08 -69.39 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.45 Total: 23.14 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.22 Total: -13.94 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -4.65 Total: -97.70 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.07 Total: -26.58 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.48 2.08 -69.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413560868.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.992 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds