Wall clock time and date at job start Tue Mar 31 2020 13:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46817 * 2 1 4 4 C 1.52993 * 109.47323 * 64.99877 * 3 2 1 5 5 C 1.53001 * 109.47324 * 185.49486 * 4 3 2 6 6 C 1.50705 * 109.46937 * 185.00095 * 3 2 1 7 7 O 1.21278 * 119.99883 * 274.46248 * 6 3 2 8 8 N 1.34777 * 120.00060 * 94.46229 * 6 3 2 9 9 C 1.46924 * 120.63053 * 354.79485 * 8 6 3 10 10 C 1.53162 * 108.76947 * 233.59190 * 9 8 6 11 11 C 1.53042 * 109.32553 * 305.35470 * 10 9 8 12 12 C 1.53040 * 109.52672 * 61.37341 * 11 10 9 13 13 H 1.09003 * 109.49661 * 58.59535 * 12 11 10 14 14 C 1.53007 * 109.49755 * 178.65816 * 12 11 10 15 15 H 1.09001 * 110.88584 * 56.11975 * 14 12 11 16 16 C 1.55153 * 111.00148 * 179.97438 * 14 12 11 17 17 C 1.54326 * 102.93966 * 153.57557 * 16 14 12 18 18 N 1.47022 * 107.26999 * 337.80688 * 17 16 14 19 19 C 1.36937 * 125.64671 * 178.91782 * 18 17 16 20 20 H 1.07997 * 120.00006 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00164 * 0.02562 * 19 18 17 22 22 N 1.31629 * 119.99851 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00315 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47120 * 120.00048 * 23 21 19 26 26 H 1.48501 * 109.47397 * 240.00247 * 23 21 19 27 27 C 1.47424 * 108.70439 * 358.94277 * 18 17 16 28 28 C 1.46929 * 120.63163 * 174.77689 * 8 6 3 29 29 H 1.08994 * 109.47186 * 60.00266 * 1 2 3 30 30 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46839 * 300.00285 * 1 2 3 32 32 H 1.08994 * 109.47439 * 240.00065 * 2 1 3 33 33 H 1.09004 * 109.47263 * 119.99207 * 2 1 3 34 34 H 1.09003 * 109.47150 * 304.99801 * 3 2 1 35 35 H 1.08995 * 109.47306 * 305.49685 * 4 3 2 36 36 H 1.09007 * 109.47398 * 65.50072 * 4 3 2 37 37 H 1.09000 * 109.47687 * 174.98011 * 5 4 3 38 38 H 1.08999 * 109.47117 * 294.98471 * 5 4 3 39 39 H 1.09007 * 109.46973 * 54.97675 * 5 4 3 40 40 H 1.09005 * 109.58860 * 353.37462 * 9 8 6 41 41 H 1.08998 * 109.59008 * 113.80175 * 9 8 6 42 42 H 1.09003 * 109.47869 * 185.41212 * 10 9 8 43 43 H 1.08992 * 109.50434 * 65.31552 * 10 9 8 44 44 H 1.09006 * 109.46237 * 301.36033 * 11 10 9 45 45 H 1.08998 * 109.45872 * 181.38861 * 11 10 9 46 46 H 1.08993 * 110.72406 * 271.93952 * 16 14 12 47 47 H 1.09005 * 110.72250 * 35.03867 * 16 14 12 48 48 H 1.09004 * 109.88155 * 97.22294 * 17 16 14 49 49 H 1.08999 * 109.88480 * 218.23413 * 17 16 14 50 50 H 0.96995 * 119.99851 * 179.97438 * 22 21 19 51 51 H 1.09004 * 110.36029 * 265.28521 * 27 18 17 52 52 H 1.09000 * 110.36326 * 142.96735 * 27 18 17 53 53 H 1.09003 * 109.58557 * 6.62296 * 28 8 6 54 54 H 1.08994 * 109.58625 * 246.19908 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0241 3.6053 1.2509 6 6 3.5419 1.4444 -0.1239 7 8 4.2322 1.3330 0.8671 8 7 4.1180 1.5698 -1.3358 9 6 3.2989 1.5913 -2.5554 10 6 3.8228 0.5229 -3.5198 11 6 5.3169 0.7485 -3.7624 12 6 6.0753 0.6185 -2.4395 13 1 5.9011 -0.3707 -2.0160 14 6 7.5727 0.8110 -2.6882 15 1 7.7661 1.7673 -3.1742 16 6 8.3764 0.6865 -1.3669 17 6 9.7670 0.2238 -1.8506 18 7 9.5859 -0.3954 -3.1717 19 6 10.5831 -0.9164 -3.9523 20 1 10.3462 -1.3510 -4.9121 21 6 11.8985 -0.8860 -3.5098 22 7 12.1872 -0.3567 -2.3397 23 14 13.2587 -1.5974 -4.5743 24 1 12.6759 -2.1286 -5.8326 25 1 14.2433 -0.5332 -4.8960 26 1 13.9384 -2.6953 -3.8408 27 6 8.1531 -0.3619 -3.5171 28 6 5.5770 1.6880 -1.4626 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 1.6053 1.9816 -0.8419 35 1 0.5574 2.0394 1.4444 36 1 2.1476 1.6478 2.1418 37 1 1.6569 4.1120 2.1434 38 1 3.1095 3.6940 1.2034 39 1 1.5831 4.0635 0.3655 40 1 2.2605 1.3773 -2.3020 41 1 3.3679 2.5726 -3.0247 42 1 3.2860 0.5927 -4.4659 43 1 3.6698 -0.4652 -3.0861 44 1 5.4716 1.7463 -4.1731 45 1 5.6867 0.0042 -4.4677 46 1 8.4442 1.6512 -0.8644 47 1 7.9261 -0.0581 -0.7103 48 1 10.4355 1.0810 -1.9314 49 1 10.1798 -0.5033 -1.1512 50 1 13.1063 -0.3358 -2.0304 51 1 7.6732 -1.2993 -3.2358 52 1 8.0242 -0.1736 -4.5830 53 1 6.0418 1.5379 -0.4881 54 1 5.8318 2.6773 -1.8427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961144049.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:07 Heat of formation + Delta-G solvation = -59.227325 kcal Electronic energy + Delta-G solvation = -28916.555361 eV Core-core repulsion = 25272.851578 eV Total energy + Delta-G solvation = -3643.703783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56890 -39.85414 -38.10657 -36.80314 -35.15367 -33.60013 -32.61113 -32.52101 -30.71135 -29.26864 -28.04387 -26.61904 -25.93801 -24.02696 -23.69199 -22.74028 -21.76450 -21.49245 -20.83431 -19.49328 -18.86341 -18.44968 -16.98575 -16.89793 -16.55065 -16.06233 -15.72201 -15.48024 -15.46523 -15.19825 -14.89057 -14.77967 -14.43225 -14.21073 -13.99137 -13.85953 -13.77526 -13.59150 -13.35914 -13.21394 -12.95793 -12.84631 -12.79873 -12.74063 -12.42554 -12.30710 -12.09180 -12.07659 -11.95692 -11.81671 -11.78443 -11.71153 -11.57003 -11.43047 -11.37059 -11.32488 -11.03730 -10.73949 -10.55319 -9.57909 -8.91680 -7.86188 -5.22500 1.43658 1.45563 1.55970 1.64855 2.03669 2.48436 3.31796 3.47440 3.59259 3.71503 3.76960 3.82501 3.90071 3.97030 4.11995 4.14688 4.20007 4.30439 4.35795 4.40210 4.42470 4.51219 4.55025 4.56602 4.62426 4.67538 4.71450 4.79609 4.80792 4.86722 4.90369 4.92299 4.96425 4.98348 5.03802 5.08788 5.14696 5.17923 5.22152 5.23619 5.30391 5.35965 5.39166 5.41996 5.43991 5.49715 5.55175 5.60101 5.64014 5.74657 6.18101 6.48291 7.08183 7.23016 7.76454 8.42185 9.24836 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.002592 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.962034 B =10801.427314 C =11279.082088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.100 4.100 4 C -0.110 4.110 5 C -0.152 4.152 6 C 0.511 3.489 7 O -0.591 6.591 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.128 4.128 11 C -0.114 4.114 12 C -0.073 4.073 13 H 0.055 0.945 14 C -0.076 4.076 15 H 0.080 0.920 16 C -0.126 4.126 17 C 0.187 3.813 18 N -0.630 5.630 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.073 4.073 22 N -0.955 5.955 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.142 3.858 28 C 0.120 3.880 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.010 0.990 49 H -0.002 1.002 50 H 0.246 0.754 51 H 0.016 0.984 52 H 0.047 0.953 53 H 0.064 0.936 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.031 6.672 -0.385 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.121 4.121 4 C -0.147 4.147 5 C -0.210 4.210 6 C 0.301 3.699 7 O -0.471 6.471 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.166 4.166 11 C -0.151 4.151 12 C -0.093 4.093 13 H 0.073 0.927 14 C -0.096 4.096 15 H 0.098 0.902 16 C -0.165 4.165 17 C 0.061 3.939 18 N -0.356 5.356 19 C -0.369 4.369 20 H 0.103 0.897 21 C -0.265 4.265 22 N -0.604 5.604 23 Si 0.810 3.190 24 H -0.186 1.186 25 H -0.218 1.218 26 H -0.221 1.221 27 C 0.018 3.982 28 C -0.003 4.003 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.029 0.971 49 H 0.016 0.984 50 H 0.055 0.945 51 H 0.033 0.967 52 H 0.066 0.934 53 H 0.082 0.918 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.475 6.585 0.109 30.202 hybrid contribution 1.967 -0.601 0.066 2.058 sum -27.508 5.984 0.175 28.152 Atomic orbital electron populations 1.21798 0.92784 1.02621 1.03143 1.21452 0.98132 0.93323 1.02141 1.21558 0.89249 0.99576 1.01753 1.21504 1.02418 0.95347 0.95470 1.21790 1.00130 0.96208 1.02850 1.21397 0.91982 0.74358 0.82131 1.90671 1.66327 1.51632 1.38479 1.48306 1.07088 1.71815 1.07020 1.22123 0.95593 1.00605 0.83888 1.21899 0.95345 0.98791 1.00556 1.21588 0.95258 1.02922 0.95378 1.21285 0.92651 0.98422 0.96909 0.92655 1.22198 0.93544 0.98647 0.95219 0.90156 1.22749 0.95723 1.00639 0.97352 1.20849 0.92749 0.94448 0.85815 1.44857 1.02819 1.69649 1.18313 1.19544 0.86892 1.31032 0.99475 0.89698 1.25745 0.99776 1.02257 0.98720 1.70235 1.17765 1.51474 1.20973 0.84954 0.78810 0.77136 0.78110 1.18622 1.21790 1.22080 1.21695 0.83552 0.95516 0.97479 1.21501 0.80258 0.98830 0.99742 0.90787 0.92077 0.91792 0.91372 0.93310 0.86197 0.88301 0.93382 0.91741 0.95483 0.91004 0.87169 0.89461 0.87780 0.92307 0.90626 0.91704 0.90828 0.92627 0.97134 0.98378 0.94504 0.96651 0.93424 0.91752 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.68 71.98 0.70 -0.49 16 2 C -0.11 -1.54 5.28 30.60 0.16 -1.38 16 3 C -0.10 -1.52 1.39 -11.54 -0.02 -1.54 16 4 C -0.11 -1.71 5.04 30.59 0.15 -1.56 16 5 C -0.15 -2.41 9.65 71.98 0.69 -1.72 16 6 C 0.51 12.40 5.84 87.66 0.51 12.91 16 7 O -0.59 -20.41 15.36 -3.02 -0.05 -20.45 16 8 N -0.61 -12.88 2.97 -818.96 -2.43 -15.31 16 9 C 0.10 1.21 6.15 86.35 0.53 1.74 16 10 C -0.13 -1.71 6.08 30.66 0.19 -1.52 16 11 C -0.11 -2.23 5.05 30.62 0.15 -2.07 16 12 C -0.07 -1.93 1.86 -10.71 -0.02 -1.95 16 13 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 14 C -0.08 -2.61 2.57 -9.40 -0.02 -2.63 16 15 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 16 C -0.13 -5.10 5.40 31.78 0.17 -4.93 16 17 C 0.19 9.96 5.37 86.73 0.47 10.42 16 18 N -0.63 -34.07 3.39 -691.99 -2.35 -36.42 16 19 C -0.24 -13.99 10.28 84.03 0.86 -13.13 16 20 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 21 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 22 N -0.96 -60.30 10.31 21.65 0.22 -60.08 16 23 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 27 C 0.14 5.93 5.94 86.85 0.52 6.45 16 28 C 0.12 3.09 5.40 86.36 0.47 3.55 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.48 6.45 -2.38 -0.02 0.46 16 32 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.12 1.10 6.20 -2.39 -0.01 1.08 16 35 H 0.10 1.00 6.32 -2.39 -0.02 0.99 16 36 H 0.05 1.03 7.66 -2.38 -0.02 1.01 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.03 0.58 7.40 -2.39 -0.02 0.57 16 39 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.11 0.80 5.50 -2.38 -0.01 0.79 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.06 1.38 7.46 -2.39 -0.02 1.36 16 46 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.05 2.24 8.04 -2.38 -0.02 2.22 16 48 H 0.01 0.62 7.38 -2.39 -0.02 0.60 16 49 H 0.00 -0.12 7.50 -2.39 -0.02 -0.14 16 50 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 51 H 0.02 0.66 7.98 -2.38 -0.02 0.64 16 52 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 53 H 0.06 2.08 6.38 -2.39 -0.02 2.06 16 54 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -77.25 401.71 4.24 -73.01 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.84 Total: 11.70 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.98 Total: -1.67 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.56 Total: -111.81 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -77.25 4.24 -73.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961144049.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.783 kcal (2) G-P(sol) polarization free energy of solvation -77.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds