Wall clock time and date at job start Tue Mar 31 2020 13:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47495 * 2 1 4 4 C 1.53003 * 109.47495 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47015 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46623 * 184.99741 * 5 4 3 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46991 * 60.00378 * 7 6 5 9 9 C 1.50712 * 109.46964 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99514 * 120.00126 * 9 8 7 11 11 N 1.34767 * 119.99915 * 299.99685 * 9 8 7 12 12 C 1.46500 * 119.99822 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.85131 * 25.33374 * 12 11 9 14 14 C 1.53781 * 113.61611 * 156.53377 * 12 11 9 15 15 C 1.53776 * 87.08480 * 139.97992 * 14 12 11 16 16 H 1.08997 * 113.61644 * 220.01815 * 15 14 12 17 17 N 1.46502 * 113.61336 * 89.19909 * 15 14 12 18 18 C 1.36937 * 119.99909 * 155.00592 * 17 15 14 19 19 H 1.07998 * 120.00196 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99716 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00437 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99751 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46804 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47074 * 119.99968 * 22 20 18 25 25 H 1.48491 * 109.47034 * 239.99878 * 22 20 18 26 26 C 1.53788 * 113.61476 * 254.14003 * 12 11 9 27 27 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 28 28 C 1.52997 * 109.47317 * 64.99921 * 5 4 3 29 29 H 1.08994 * 109.47229 * 300.00382 * 1 2 3 30 30 H 1.09006 * 109.46261 * 60.00210 * 1 2 3 31 31 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47145 * 239.99141 * 2 1 3 33 33 H 1.09000 * 109.46883 * 120.00073 * 2 1 3 34 34 H 1.08999 * 109.47626 * 59.99435 * 3 2 1 35 35 H 1.09000 * 109.47115 * 299.99931 * 3 2 1 36 36 H 1.08994 * 109.47229 * 59.99618 * 4 3 2 37 37 H 1.08998 * 109.46376 * 300.00059 * 4 3 2 38 38 H 1.09001 * 109.47362 * 304.99190 * 5 4 3 39 39 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 40 40 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 41 41 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 42 42 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 43 43 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 44 44 H 0.97003 * 120.00646 * 0.02562 * 11 9 8 45 45 H 1.09000 * 113.61369 * 254.52901 * 14 12 11 46 46 H 1.09005 * 113.61590 * 25.42865 * 14 12 11 47 47 H 0.97000 * 119.99962 * 334.99467 * 17 15 14 48 48 H 0.96996 * 120.00611 * 180.02562 * 21 20 18 49 49 H 1.08997 * 113.61571 * 334.56593 * 26 12 11 50 50 H 1.09000 * 113.61423 * 105.47181 * 26 12 11 51 51 H 1.08996 * 109.47452 * 300.00000 * 27 8 7 52 52 H 1.09000 * 109.47054 * 180.02562 * 27 8 7 53 53 H 1.09002 * 109.47153 * 299.99641 * 28 5 4 54 54 H 1.08996 * 109.46952 * 59.99813 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6049 2.8867 -0.1263 7 6 6.1149 4.3292 -0.1263 8 6 5.7106 5.0130 1.1813 9 6 6.2135 6.4337 1.1816 10 8 5.4294 7.3544 1.2736 11 7 7.5343 6.6810 1.0797 12 6 8.0231 8.0621 1.0794 13 1 7.3470 8.7505 1.5866 14 6 9.4885 8.1971 1.5255 15 6 9.6470 9.2507 0.4166 16 1 10.5943 9.1827 -0.1182 17 7 9.3372 10.6142 0.8540 18 6 9.8916 11.6843 0.2038 19 1 10.5574 11.5232 -0.6311 20 6 9.5985 12.9762 0.6187 21 7 8.7874 13.1726 1.6364 22 14 10.3552 14.4361 -0.2678 23 1 11.2240 13.9500 -1.3696 24 1 9.2761 15.2886 -0.8282 25 1 11.1665 15.2301 0.6894 26 6 8.4787 8.5541 -0.3046 27 6 4.1859 5.0112 1.3076 28 6 3.6759 3.5682 1.3079 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9562 -0.8900 36 1 3.9331 0.9287 -0.8908 37 1 3.9337 0.9284 0.8891 38 1 3.6453 3.4244 -0.8414 39 1 6.0398 2.3472 0.7150 40 1 5.8929 2.3999 -1.0581 41 1 7.2011 4.3305 -0.2167 42 1 5.6800 4.8684 -0.9678 43 1 6.1456 4.4739 2.0229 44 1 8.1615 5.9447 1.0058 45 1 9.6033 8.6012 2.5313 46 1 10.0801 7.2967 1.3600 47 1 8.7394 10.7589 1.6040 48 1 8.5823 14.0753 1.9261 49 1 8.7936 7.7514 -0.9714 50 1 7.7794 9.2459 -0.7741 51 1 3.7509 5.5504 0.4661 52 1 3.8979 5.4987 2.2390 53 1 2.5896 3.5669 1.3979 54 1 4.1108 3.0287 2.1492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021017708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:19 Heat of formation + Delta-G solvation = -76.083621 kcal Electronic energy + Delta-G solvation = -27178.426654 eV Core-core repulsion = 23533.991927 eV Total energy + Delta-G solvation = -3644.434727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42142 -39.98587 -38.88347 -36.34005 -35.74257 -34.32223 -33.12461 -31.76725 -31.50549 -29.31089 -26.54693 -26.41778 -25.50934 -24.35985 -23.51613 -22.65601 -21.68903 -21.09831 -20.63929 -20.16469 -19.35735 -18.06104 -17.43892 -16.68768 -16.53111 -16.22269 -15.79385 -15.78659 -15.22583 -15.12983 -15.04405 -14.89930 -14.53961 -14.34426 -14.01566 -13.79851 -13.57049 -13.38987 -13.28546 -13.25618 -13.02874 -12.93040 -12.83930 -12.58642 -12.37832 -12.13313 -12.05648 -11.95407 -11.91246 -11.81905 -11.76755 -11.71337 -11.36630 -11.33212 -11.30246 -11.07864 -10.91494 -10.78023 -10.52243 -9.94924 -9.04261 -7.97156 -5.27050 1.46203 1.47750 1.57813 1.66811 2.27567 2.54194 3.35048 3.60454 3.65381 3.68439 3.77797 3.83736 3.90215 4.00097 4.09268 4.15152 4.26772 4.29936 4.31624 4.39988 4.40804 4.48159 4.54745 4.60470 4.65038 4.69289 4.79885 4.82342 4.86837 4.92171 4.97978 4.98923 5.03099 5.07421 5.15623 5.16546 5.19180 5.24551 5.25240 5.28534 5.30876 5.32782 5.34628 5.37883 5.43887 5.50629 5.51873 5.60522 5.67657 5.71028 6.25342 6.65477 7.29747 7.35801 8.06125 8.27366 9.26664 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.001804 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.225970 B =15517.660431 C =15804.550720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.106 4.106 7 C -0.106 4.106 8 C -0.094 4.094 9 C 0.504 3.496 10 O -0.597 6.597 11 N -0.700 5.700 12 C 0.130 3.870 13 H 0.064 0.936 14 C -0.137 4.137 15 C 0.150 3.850 16 H 0.079 0.921 17 N -0.723 5.723 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.977 3.023 23 H -0.261 1.261 24 H -0.297 1.297 25 H -0.292 1.292 26 C -0.170 4.170 27 C -0.100 4.100 28 C -0.106 4.106 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.121 0.879 44 H 0.417 0.583 45 H 0.060 0.940 46 H 0.127 0.873 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.106 0.894 50 H 0.030 0.970 51 H 0.044 0.956 52 H 0.049 0.951 53 H 0.066 0.934 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -33.042 -2.951 34.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.145 4.145 5 C -0.107 4.107 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.115 4.115 9 C 0.293 3.707 10 O -0.477 6.477 11 N -0.352 5.352 12 C 0.025 3.975 13 H 0.082 0.918 14 C -0.176 4.176 15 C 0.039 3.961 16 H 0.097 0.903 17 N -0.361 5.361 18 C -0.375 4.375 19 H 0.101 0.899 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.185 1.185 24 H -0.225 1.225 25 H -0.219 1.219 26 C -0.212 4.212 27 C -0.138 4.138 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.139 0.861 44 H 0.255 0.745 45 H 0.079 0.921 46 H 0.145 0.855 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.124 0.876 50 H 0.049 0.951 51 H 0.063 0.937 52 H 0.068 0.932 53 H 0.084 0.916 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.491 -32.287 -3.011 33.521 hybrid contribution -0.167 1.524 -0.007 1.533 sum -8.659 -30.763 -3.018 32.101 Atomic orbital electron populations 1.21801 0.96123 1.01745 1.01630 1.21528 0.95717 0.96774 1.02099 1.21680 0.95890 0.96764 1.01739 1.21579 0.94961 0.95458 1.02506 1.21199 0.96028 0.96197 0.97307 1.21556 0.94622 0.94805 1.03315 1.21532 1.01967 0.96572 0.94339 1.21382 0.97586 0.90314 1.02243 1.21573 0.82323 0.92539 0.74307 1.90706 1.56830 1.48682 1.51528 1.45911 1.07424 1.08293 1.73549 1.22144 0.94729 0.83132 0.97519 0.91769 1.23722 0.94176 1.00433 0.99264 1.21298 0.96143 0.83463 0.95181 0.90276 1.42408 1.55398 1.00745 1.37544 1.19775 1.21083 0.86179 1.10456 0.89889 1.25649 1.01265 1.00445 0.99744 1.69846 1.41449 1.20670 1.30350 0.85024 0.77339 0.79229 0.77868 1.18508 1.22484 1.21903 1.24200 0.99993 1.00219 0.96833 1.21320 0.93309 0.97843 1.01308 1.21611 1.00879 0.93461 0.98360 0.92955 0.93068 0.92415 0.91975 0.91799 0.92096 0.92830 0.91541 0.91250 0.92447 0.90144 0.90574 0.89541 0.93170 0.86088 0.74463 0.92134 0.85461 0.79776 0.94072 0.87591 0.95077 0.93725 0.93175 0.91570 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.16 5.93 30.59 0.18 -0.98 16 3 C -0.12 -1.30 4.97 30.59 0.15 -1.15 16 4 C -0.11 -1.00 4.68 30.60 0.14 -0.86 16 5 C -0.09 -1.05 2.19 -10.79 -0.02 -1.07 16 6 C -0.11 -1.04 5.20 30.60 0.16 -0.88 16 7 C -0.11 -1.47 5.10 30.59 0.16 -1.31 16 8 C -0.09 -1.73 2.53 -11.54 -0.03 -1.76 16 9 C 0.50 14.43 7.15 87.66 0.63 15.06 16 10 O -0.60 -24.38 15.60 -3.01 -0.05 -24.43 16 11 N -0.70 -17.28 5.25 -440.03 -2.31 -19.59 16 12 C 0.13 4.34 4.09 45.52 0.19 4.52 16 13 H 0.06 2.80 7.50 -2.39 -0.02 2.78 16 14 C -0.14 -4.06 7.58 31.12 0.24 -3.82 16 15 C 0.15 5.76 4.57 45.58 0.21 5.97 16 16 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 17 N -0.72 -37.40 5.31 -320.17 -1.70 -39.10 16 18 C -0.24 -13.72 9.97 84.03 0.84 -12.88 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 21 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 22 Si 0.98 46.99 29.55 68.60 2.03 49.01 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 C -0.17 -5.96 7.69 31.18 0.24 -5.72 16 27 C -0.10 -2.07 4.50 30.61 0.14 -1.93 16 28 C -0.11 -1.47 4.96 30.61 0.15 -1.32 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.69 6.56 -2.39 -0.02 0.68 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.42 6.52 8.13 -92.71 -0.75 5.76 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.13 2.57 8.11 -2.38 -0.02 2.55 16 47 H 0.37 21.07 7.90 -92.71 -0.73 20.34 16 48 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 50 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 52 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 53 H 0.07 0.93 6.56 -2.39 -0.02 0.92 16 54 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.90 417.81 2.16 -72.74 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.63 Total: 35.87 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.54 Total: -13.11 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -3.73 Total: -120.08 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -74.90 2.16 -72.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021017708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.343 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds