Wall clock time and date at job start Tue Mar 31 2020 13:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00396 * 2 1 4 4 H 1.08003 * 120.00032 * 154.66493 * 3 2 1 5 5 C 1.38818 * 119.99900 * 334.66813 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.07492 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.07226 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46505 * 119.99695 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.49525 * 180.02562 * 11 2 1 13 13 C 1.53040 * 109.50179 * 59.99526 * 11 2 1 14 14 C 1.53038 * 109.53889 * 178.68367 * 13 11 2 15 15 C 1.53191 * 109.31101 * 61.36574 * 14 13 11 16 16 N 1.46925 * 108.77573 * 305.36545 * 15 14 13 17 17 C 1.34774 * 120.62831 * 233.62637 * 16 15 14 18 18 O 1.21286 * 120.00052 * 179.97438 * 17 16 15 19 19 C 1.50704 * 120.00224 * 0.02562 * 17 16 15 20 20 H 1.09004 * 115.54457 * 34.41261 * 19 17 16 21 21 C 1.52995 * 117.49863 * 248.74277 * 19 17 16 22 22 C 1.52994 * 117.49943 * 180.02562 * 19 17 16 23 23 H 1.08995 * 117.50277 * 0.02562 * 22 19 17 24 24 C 1.52998 * 117.49899 * 215.00017 * 22 19 17 25 25 C 1.53008 * 109.47193 * 175.00337 * 24 22 19 26 26 C 1.53006 * 109.46971 * 60.00248 * 25 24 22 27 27 C 1.52998 * 109.47193 * 179.97438 * 25 24 22 28 28 C 1.52994 * 109.47062 * 300.00319 * 25 24 22 29 29 C 1.46920 * 118.74092 * 53.61081 * 16 15 14 30 30 H 1.09001 * 109.47227 * 84.47596 * 1 2 3 31 31 H 1.08997 * 109.46970 * 324.48298 * 1 2 3 32 32 H 1.08999 * 109.47624 * 204.48216 * 1 2 3 33 33 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.46007 * 298.70936 * 13 11 2 35 35 H 1.09003 * 109.45850 * 58.67591 * 13 11 2 36 36 H 1.08999 * 109.49458 * 181.31686 * 14 13 11 37 37 H 1.08998 * 109.49882 * 301.41395 * 14 13 11 38 38 H 1.09005 * 109.58316 * 65.15386 * 15 14 13 39 39 H 1.09001 * 109.58148 * 185.43194 * 15 14 13 40 40 H 1.08996 * 117.50087 * 0.02562 * 21 19 17 41 41 H 1.09006 * 117.49754 * 145.01446 * 21 19 17 42 42 H 1.08998 * 109.47377 * 295.00434 * 24 22 19 43 43 H 1.08995 * 109.47508 * 55.00521 * 24 22 19 44 44 H 1.09002 * 109.46852 * 59.99789 * 26 25 24 45 45 H 1.08998 * 109.46997 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.46912 * 300.00284 * 26 25 24 47 47 H 1.09009 * 109.46941 * 60.00147 * 27 25 24 48 48 H 1.08998 * 109.46822 * 179.97438 * 27 25 24 49 49 H 1.08998 * 109.47377 * 300.00097 * 27 25 24 50 50 H 1.09003 * 109.47083 * 59.99555 * 28 25 24 51 51 H 1.08998 * 109.47407 * 179.97438 * 28 25 24 52 52 H 1.09000 * 109.46929 * 300.00069 * 28 25 24 53 53 H 1.09001 * 109.58727 * 186.60614 * 29 16 15 54 54 H 1.08995 * 109.58833 * 66.17387 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1519 1.2308 0.4002 5 6 1.5558 2.3303 -0.5144 6 7 0.3069 2.2944 -0.9282 7 14 2.5292 3.9212 -0.6190 8 1 3.8997 3.6986 -0.0925 9 1 2.6078 4.3611 -2.0352 10 1 1.8535 4.9689 0.1879 11 6 2.1974 -1.2688 -0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8281 -2.0714 -1.2502 14 6 2.6174 -3.3824 -1.2683 15 6 2.2494 -4.2123 -0.0344 16 7 2.4652 -3.3946 1.1671 17 6 3.2363 -3.8465 2.1758 18 8 3.4071 -3.1618 3.1622 19 6 3.8872 -5.2022 2.0777 20 1 4.2028 -5.5009 1.0780 21 6 3.3795 -6.2992 3.0156 22 6 4.7500 -5.6585 3.2560 23 1 4.8465 -4.9785 4.1023 24 6 5.9883 -6.4999 2.9407 25 6 6.7780 -6.7474 4.2277 26 6 5.8965 -7.4936 5.2313 27 6 8.0160 -7.5893 3.9125 28 6 7.2106 -5.4075 4.8263 29 6 1.8247 -2.0749 1.2477 30 1 -0.3634 0.0989 -1.0229 31 1 -0.3633 0.8364 0.5970 32 1 -0.3634 -0.9352 0.4259 33 1 -0.1079 3.0939 -1.2880 34 1 0.7604 -2.2904 -1.2387 35 1 2.0699 -1.4898 -2.1399 36 1 2.3713 -3.9427 -2.1703 37 1 3.6853 -3.1644 -1.2549 38 1 1.2018 -4.5079 -0.0920 39 1 2.8782 -5.1017 0.0084 40 1 2.5744 -6.0405 3.7033 41 1 3.3613 -7.3197 2.6331 42 1 5.6802 -7.4544 2.5142 43 1 6.6163 -5.9684 2.2257 44 1 5.5883 -8.4481 4.8047 45 1 6.4588 -7.6695 6.1483 46 1 5.0142 -6.8942 5.4559 47 1 8.6442 -7.0581 3.1973 48 1 8.5787 -7.7652 4.8292 49 1 7.7074 -8.5439 3.4863 50 1 6.3283 -4.8081 5.0508 51 1 7.7727 -5.5838 5.7433 52 1 7.8385 -4.8760 4.1112 53 1 2.1750 -1.5525 2.1380 54 1 0.7426 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027419008.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:52 Heat of formation + Delta-G solvation = -21.964195 kcal Electronic energy + Delta-G solvation = -28478.378920 eV Core-core repulsion = 24836.290987 eV Total energy + Delta-G solvation = -3642.087933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45612 -39.66301 -38.65150 -36.78603 -36.45251 -33.93590 -32.87283 -30.63355 -28.62987 -28.13007 -28.09942 -28.03417 -26.75166 -25.46402 -24.05735 -23.03576 -22.06482 -20.75333 -19.83183 -19.54284 -18.82468 -18.22732 -17.25720 -16.92271 -16.29139 -15.86985 -15.53835 -15.46953 -15.40088 -15.24232 -15.12282 -14.82780 -14.45576 -14.19450 -14.06882 -13.84773 -13.74971 -13.63483 -13.13967 -13.07722 -12.95214 -12.75985 -12.60452 -12.54131 -12.51324 -12.34157 -12.27153 -12.10039 -11.96842 -11.88584 -11.80196 -11.71374 -11.57783 -11.41578 -11.29999 -11.03356 -10.81529 -10.72015 -10.64033 -9.71313 -8.75696 -7.87495 -5.36624 1.42128 1.42710 1.50348 1.53834 1.96400 2.46978 2.89827 3.25678 3.45137 3.61566 3.73605 3.83090 3.93633 4.01969 4.07356 4.08798 4.10754 4.16845 4.23457 4.29618 4.35403 4.50786 4.62041 4.72311 4.73489 4.75316 4.77967 4.81861 4.86318 4.89383 4.90343 4.96437 4.99558 5.02399 5.03425 5.08335 5.15435 5.16171 5.19820 5.29714 5.31758 5.39188 5.43623 5.48122 5.49914 5.53121 5.57852 5.61242 5.62175 5.75205 6.31190 6.48511 7.12898 7.19710 7.83156 8.26406 9.15177 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.002632 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.028545 B =10637.255071 C =11358.235414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.615 5.615 3 C -0.267 4.267 4 H 0.060 0.940 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.272 1.272 9 H -0.286 1.286 10 H -0.290 1.290 11 C 0.170 3.830 12 H 0.042 0.958 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.106 3.894 16 N -0.602 5.602 17 C 0.530 3.470 18 O -0.598 6.598 19 C -0.193 4.193 20 H 0.153 0.847 21 C -0.128 4.128 22 C -0.120 4.120 23 H 0.091 0.909 24 C -0.072 4.072 25 C -0.066 4.066 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.147 4.147 29 C 0.112 3.888 30 H 0.005 0.995 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.249 0.751 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.066 0.934 50 H 0.042 0.958 51 H 0.057 0.943 52 H 0.049 0.951 53 H 0.050 0.950 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 -26.669 4.303 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.338 5.338 3 C -0.397 4.397 4 H 0.078 0.922 5 C -0.242 4.242 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.196 1.196 9 H -0.212 1.212 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.061 0.939 13 C -0.162 4.162 14 C -0.162 4.162 15 C -0.015 4.015 16 N -0.334 5.334 17 C 0.321 3.679 18 O -0.480 6.480 19 C -0.214 4.214 20 H 0.170 0.830 21 C -0.166 4.166 22 C -0.138 4.138 23 H 0.109 0.891 24 C -0.110 4.110 25 C -0.066 4.066 26 C -0.196 4.196 27 C -0.195 4.195 28 C -0.205 4.205 29 C -0.013 4.013 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.156 0.844 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.076 0.924 52 H 0.068 0.932 53 H 0.069 0.931 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.034 -26.165 4.742 28.421 hybrid contribution -0.028 2.098 0.005 2.098 sum 10.007 -24.067 4.747 26.493 Atomic orbital electron populations 1.20533 0.82437 0.95390 0.97598 1.44105 1.02225 1.00981 1.86475 1.19499 0.98994 0.87826 1.33368 0.92173 1.25859 0.97518 1.01789 0.98995 1.70256 1.12296 1.28415 1.47194 0.85179 0.78395 0.79548 0.77206 1.19641 1.21202 1.21653 1.20688 0.94647 0.85269 0.93209 0.93945 1.21932 1.00253 0.96436 0.97582 1.21910 1.00041 0.95222 0.99013 1.22088 1.03336 0.93919 0.82157 1.48200 1.48329 1.17683 1.19167 1.20539 0.77605 0.88185 0.81576 1.90659 1.63564 1.60219 1.33516 1.22361 1.07254 0.92006 0.99747 0.82951 1.23212 0.96849 0.97061 0.99439 1.22505 0.92834 1.01135 0.97352 0.89133 1.21273 0.93439 0.99259 0.96993 1.20510 0.95780 0.95107 0.95219 1.21860 0.99086 1.00220 0.98422 1.21841 0.96431 0.99688 1.01588 1.21970 1.00696 0.97055 1.00734 1.21902 0.96827 0.83259 0.99312 0.97647 0.96102 0.95970 0.94118 0.92367 0.93798 0.87656 0.91979 0.89984 0.86111 0.89942 0.84404 0.89306 0.91594 0.91485 0.92900 0.93422 0.92775 0.92550 0.91545 0.93893 0.92419 0.93159 0.93094 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.48 8.00 127.77 1.02 10.50 16 2 N -0.61 -32.20 2.82 -702.33 -1.98 -34.19 16 3 C -0.27 -15.46 9.59 84.04 0.81 -14.65 16 4 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 5 C -0.05 -2.70 5.38 84.86 0.46 -2.24 16 6 N -0.93 -56.15 10.12 21.65 0.22 -55.94 16 7 Si 0.97 46.68 29.56 68.60 2.03 48.71 16 8 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 C 0.17 7.22 2.74 45.07 0.12 7.34 16 12 H 0.04 1.95 7.88 -2.39 -0.02 1.93 16 13 C -0.12 -4.20 5.15 30.62 0.16 -4.04 16 14 C -0.12 -2.82 6.08 30.67 0.19 -2.63 16 15 C 0.11 2.15 6.34 86.36 0.55 2.69 16 16 N -0.60 -18.21 2.97 -818.90 -2.43 -20.65 16 17 C 0.53 16.67 7.48 87.66 0.66 17.33 16 18 O -0.60 -24.94 15.67 -3.05 -0.05 -24.99 16 19 C -0.19 -3.83 4.84 -11.54 -0.06 -3.89 16 20 H 0.15 2.08 6.57 -2.38 -0.02 2.06 16 21 C -0.13 -1.98 9.89 30.65 0.30 -1.68 16 22 C -0.12 -2.25 3.77 -10.74 -0.04 -2.29 16 23 H 0.09 2.32 5.58 -2.39 -0.01 2.31 16 24 C -0.07 -0.97 4.55 30.60 0.14 -0.83 16 25 C -0.07 -0.89 0.80 -52.18 -0.04 -0.94 16 26 C -0.14 -1.77 8.23 71.98 0.59 -1.18 16 27 C -0.14 -1.49 8.47 71.98 0.61 -0.88 16 28 C -0.15 -2.56 8.23 71.98 0.59 -1.97 16 29 C 0.11 4.37 5.78 86.37 0.50 4.87 16 30 H 0.01 0.29 7.44 -2.39 -0.02 0.27 16 31 H 0.02 1.16 7.03 -2.39 -0.02 1.15 16 32 H 0.02 0.97 6.36 -2.39 -0.02 0.96 16 33 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.06 1.98 7.72 -2.39 -0.02 1.96 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.12 1.54 5.52 -2.39 -0.01 1.53 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.14 1.17 8.03 -2.38 -0.02 1.16 16 42 H 0.09 0.81 7.88 -2.39 -0.02 0.79 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.05 0.73 7.20 -2.39 -0.02 0.71 16 47 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.04 0.91 6.14 -2.39 -0.01 0.90 16 51 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 52 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.05 2.36 7.00 -2.39 -0.02 2.34 16 54 H 0.06 2.44 6.50 -2.39 -0.02 2.43 16 Total: -1.00 -73.49 406.62 5.18 -68.31 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.84 Total: 13.22 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.55 Total: 5.52 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.20 Total: -110.77 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.49 5.18 -68.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027419008.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.341 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds