Wall clock time and date at job start Tue Mar 31 2020 13:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46943 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47164 * 304.99834 * 6 5 4 8 8 C 1.52990 * 109.47313 * 65.00114 * 6 5 4 9 9 C 1.53004 * 109.46776 * 185.00435 * 6 5 4 10 10 C 1.50697 * 109.46822 * 175.00203 * 9 6 5 11 11 O 1.21278 * 120.00271 * 359.97438 * 10 9 6 12 12 N 1.34778 * 119.99853 * 179.97438 * 10 9 6 13 13 C 1.46500 * 119.99999 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.56505 * 36.43977 * 13 12 10 15 15 C 1.54859 * 110.62318 * 273.54203 * 13 12 10 16 16 C 1.55841 * 103.44520 * 241.50945 * 15 13 12 17 17 H 1.09003 * 115.56461 * 159.56662 * 16 15 13 18 18 C 1.55845 * 105.06502 * 288.17592 * 16 15 13 19 19 C 1.54852 * 103.44469 * 71.82661 * 18 16 15 20 20 C 1.55839 * 110.62809 * 159.51840 * 13 12 10 21 21 H 1.08997 * 115.56032 * 318.92438 * 20 13 12 22 22 N 1.50238 * 101.05285 * 85.54954 * 20 13 12 23 23 C 1.36938 * 130.84332 * 233.95022 * 22 20 13 24 24 H 1.08007 * 119.99427 * 0.04936 * 23 22 20 25 25 C 1.38804 * 120.00479 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00097 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00123 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47292 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.46954 * 120.00204 * 27 25 23 30 30 H 1.48498 * 109.47280 * 239.99897 * 27 25 23 31 31 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 35 35 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 36 36 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 37 37 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 38 38 H 1.09000 * 109.47380 * 300.00763 * 4 3 2 39 39 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 40 40 H 1.09001 * 109.47502 * 299.99847 * 5 4 3 41 41 H 1.08998 * 109.47076 * 60.00779 * 5 4 3 42 42 H 1.08998 * 109.47520 * 299.99894 * 8 6 5 43 43 H 1.09001 * 109.47234 * 59.99763 * 8 6 5 44 44 H 1.09002 * 109.47564 * 179.97438 * 8 6 5 45 45 H 1.09000 * 109.47030 * 294.99312 * 9 6 5 46 46 H 1.08997 * 109.47660 * 54.99897 * 9 6 5 47 47 H 0.96998 * 120.00119 * 359.97438 * 12 10 9 48 48 H 1.08997 * 110.62828 * 359.97438 * 15 13 12 49 49 H 1.09001 * 110.62351 * 122.86453 * 15 13 12 50 50 H 1.09006 * 110.62980 * 190.31113 * 18 16 15 51 51 H 1.08998 * 110.63042 * 313.33579 * 18 16 15 52 52 H 1.09001 * 110.62942 * 118.48869 * 19 18 16 53 53 H 1.09003 * 110.62475 * 241.35150 * 19 18 16 54 54 H 0.97002 * 119.99930 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9734 2.2951 0.8429 8 6 6.1201 2.2759 -1.3062 9 6 6.1200 4.3219 0.1278 10 6 7.6219 4.3128 0.2512 11 8 8.2250 3.2607 0.2397 12 7 8.2950 5.4740 0.3745 13 6 9.7550 5.4651 0.4950 14 1 10.1855 4.6782 -0.1242 15 6 10.1791 5.2889 1.9740 16 6 10.9685 6.5966 2.2828 17 1 11.0639 6.8502 3.3386 18 6 12.3096 6.4541 1.5018 19 6 11.8855 6.6304 0.0230 20 6 10.3459 6.8553 0.1118 21 1 9.8904 7.3377 -0.7529 22 7 10.2367 7.5853 1.4203 23 6 9.6507 8.7834 1.7312 24 1 9.1629 9.3619 0.9606 25 6 9.6832 9.2539 3.0366 26 7 10.2777 8.5488 3.9758 27 14 8.8845 10.8885 3.4605 28 1 8.2889 11.4807 2.2359 29 1 7.8201 10.6715 4.4730 30 1 9.9092 11.8125 4.0097 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.6767 1.9563 -0.8899 37 1 1.6767 1.9562 0.8900 38 1 3.9330 0.9287 0.8908 39 1 3.9337 0.9286 -0.8892 40 1 3.7171 3.3991 -0.8887 41 1 3.7164 3.3985 0.8913 42 1 5.7568 1.2522 -1.3964 43 1 5.7567 2.8657 -2.1478 44 1 7.2101 2.2763 -1.3065 45 1 5.8318 4.8889 -0.7574 46 1 5.6855 4.7851 1.0135 47 1 7.8127 6.3155 0.3833 48 1 9.3031 5.2086 2.6177 49 1 10.8199 4.4146 2.0880 50 1 13.0103 7.2356 1.7961 51 1 12.7442 5.4674 1.6617 52 1 12.3758 7.4993 -0.4162 53 1 12.1123 5.7320 -0.5512 54 1 10.3001 8.8775 4.8881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111108229.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:46 Heat of formation + Delta-G solvation = -51.079446 kcal Electronic energy + Delta-G solvation = -27959.908246 eV Core-core repulsion = 24316.557782 eV Total energy + Delta-G solvation = -3643.350465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.31828 -40.07498 -37.93417 -35.72175 -35.16446 -34.38583 -31.91980 -30.96959 -30.50841 -29.73170 -28.12082 -27.20617 -26.09121 -23.81451 -22.71227 -21.82002 -21.53965 -21.16604 -20.63348 -20.18025 -18.84542 -17.87624 -17.20407 -16.76599 -16.74040 -16.37028 -15.85792 -15.56626 -15.30557 -15.09316 -14.92190 -14.54181 -14.25261 -14.12198 -13.77657 -13.67568 -13.48564 -13.22871 -12.94169 -12.90113 -12.80378 -12.74714 -12.71182 -12.55792 -12.25499 -12.08459 -11.99599 -11.93856 -11.87134 -11.84846 -11.70189 -11.50404 -11.46952 -11.30885 -11.20507 -11.11872 -10.94627 -10.89800 -10.44518 -9.83965 -8.86518 -7.75120 -5.14895 1.49351 1.50306 1.59329 1.79269 2.41476 2.51184 3.38482 3.45365 3.74196 3.83389 3.98076 4.02198 4.09475 4.14570 4.18492 4.23386 4.28077 4.42959 4.45068 4.46847 4.50513 4.63227 4.67639 4.69659 4.73820 4.75515 4.78599 4.84137 4.85575 4.91785 4.96105 5.00556 5.04826 5.09751 5.10254 5.17692 5.19146 5.22735 5.24135 5.28552 5.37750 5.39006 5.44898 5.50046 5.53503 5.58687 5.62068 5.65496 5.78780 5.91006 6.26087 6.75483 7.06647 7.42033 7.73357 8.59467 9.32695 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002499 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.121007 B =11201.008066 C =12492.163085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.108 4.108 6 C -0.070 4.070 7 H 0.053 0.947 8 C -0.147 4.147 9 C -0.132 4.132 10 C 0.505 3.495 11 O -0.581 6.581 12 N -0.710 5.710 13 C 0.141 3.859 14 H 0.082 0.918 15 C -0.132 4.132 16 C 0.141 3.859 17 H 0.112 0.888 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.128 3.872 21 H 0.105 0.895 22 N -0.609 5.609 23 C -0.210 4.210 24 H 0.087 0.913 25 C -0.071 4.071 26 N -0.949 5.949 27 Si 0.975 3.025 28 H -0.264 1.264 29 H -0.299 1.299 30 H -0.301 1.301 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.405 0.595 48 H 0.030 0.970 49 H 0.061 0.939 50 H 0.038 0.962 51 H 0.069 0.931 52 H 0.060 0.940 53 H 0.080 0.920 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.472 -12.223 -11.167 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.154 4.154 4 C -0.156 4.156 5 C -0.146 4.146 6 C -0.089 4.089 7 H 0.071 0.929 8 C -0.204 4.204 9 C -0.172 4.172 10 C 0.294 3.706 11 O -0.462 6.462 12 N -0.359 5.359 13 C 0.034 3.966 14 H 0.100 0.900 15 C -0.173 4.173 16 C 0.035 3.965 17 H 0.130 0.870 18 C -0.172 4.172 19 C -0.160 4.160 20 C 0.021 3.979 21 H 0.123 0.877 22 N -0.330 5.330 23 C -0.339 4.339 24 H 0.105 0.895 25 C -0.263 4.263 26 N -0.600 5.600 27 Si 0.805 3.195 28 H -0.188 1.188 29 H -0.226 1.226 30 H -0.229 1.229 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.132 0.868 46 H 0.118 0.882 47 H 0.240 0.760 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.057 0.943 51 H 0.087 0.913 52 H 0.078 0.922 53 H 0.099 0.901 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.140 -12.703 -11.013 21.338 hybrid contribution -0.143 1.278 0.954 1.601 sum -13.283 -11.425 -10.059 20.203 Atomic orbital electron populations 1.21782 0.95510 1.01832 1.01906 1.21554 0.96200 0.96885 1.01854 1.21599 0.94878 0.96848 1.02125 1.21620 0.95597 0.96556 1.01877 1.21609 0.92964 0.97361 1.02646 1.20827 0.95693 0.93687 0.98730 0.92887 1.21911 1.01269 1.00791 0.96478 1.21808 0.89700 1.00196 1.05509 1.21290 0.91392 0.83053 0.74880 1.90606 1.71469 1.31913 1.52221 1.46071 1.07732 1.09132 1.72947 1.22356 0.80093 0.98373 0.95734 0.90041 1.23301 0.99278 0.98464 0.96221 1.23513 0.89314 0.85951 0.97741 0.87021 1.22965 0.98143 0.99690 0.96405 1.22844 0.95841 1.01172 0.96119 1.23336 0.95071 0.89900 0.89567 0.87748 1.46700 1.63171 1.19138 1.04035 1.19399 1.26475 0.94511 0.93519 0.89487 1.25461 1.02871 1.01965 0.96050 1.69765 1.50003 1.39263 1.00920 0.85040 0.77057 0.79601 0.77804 1.18847 1.22620 1.22855 0.92810 0.92508 0.92477 0.92474 0.92030 0.91617 0.92219 0.92932 0.91686 0.90764 0.91744 0.92209 0.92197 0.93494 0.86845 0.88218 0.75982 0.95060 0.92053 0.94346 0.91289 0.92164 0.90101 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.64 5.93 30.60 0.18 -1.46 16 3 C -0.12 -1.58 5.21 30.59 0.16 -1.42 16 4 C -0.12 -1.86 4.97 30.59 0.15 -1.71 16 5 C -0.11 -1.78 4.68 30.60 0.14 -1.64 16 6 C -0.07 -1.53 2.04 -10.79 -0.02 -1.55 16 7 H 0.05 1.40 7.95 -2.39 -0.02 1.39 16 8 C -0.15 -3.25 8.69 71.98 0.63 -2.62 16 9 C -0.13 -2.98 5.17 29.85 0.15 -2.83 16 10 C 0.51 15.84 7.54 87.66 0.66 16.50 16 11 O -0.58 -21.94 13.68 -3.02 -0.04 -21.98 16 12 N -0.71 -23.13 5.10 -434.92 -2.22 -25.34 16 13 C 0.14 5.07 2.73 46.61 0.13 5.20 16 14 H 0.08 2.89 7.37 -2.39 -0.02 2.87 16 15 C -0.13 -5.47 6.22 32.21 0.20 -5.27 16 16 C 0.14 6.54 4.69 46.23 0.22 6.75 16 17 H 0.11 6.13 5.57 -2.39 -0.01 6.11 16 18 C -0.13 -5.17 6.44 32.21 0.21 -4.96 16 19 C -0.12 -4.07 6.44 32.21 0.21 -3.86 16 20 C 0.13 4.71 5.04 46.23 0.23 4.94 16 21 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 22 N -0.61 -28.41 2.99 -615.26 -1.84 -30.24 16 23 C -0.21 -10.80 10.59 84.03 0.89 -9.91 16 24 H 0.09 4.22 7.83 -2.91 -0.02 4.19 16 25 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 26 N -0.95 -54.90 10.48 21.65 0.23 -54.67 16 27 Si 0.97 44.17 29.55 68.60 2.03 46.20 16 28 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 30 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.01 6.56 -2.39 -0.02 1.00 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.19 6.56 -2.39 -0.02 1.17 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.32 5.95 -2.39 -0.01 1.31 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.41 12.58 8.62 -92.71 -0.80 11.78 16 48 H 0.03 1.43 7.98 -2.39 -0.02 1.41 16 49 H 0.06 2.38 7.82 -2.39 -0.02 2.36 16 50 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 51 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 52 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.08 2.30 7.83 -2.39 -0.02 2.28 16 54 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -63.14 411.38 3.52 -59.62 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.05 Total: 34.67 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.32 Total: -8.24 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -3.83 Total: -110.26 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.98 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -63.14 3.52 -59.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111108229.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.538 kcal (2) G-P(sol) polarization free energy of solvation -63.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds