Wall clock time and date at job start Tue Mar 31 2020 13:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47135 * 120.00019 * 2 1 3 5 5 C 1.53000 * 109.46864 * 175.00312 * 4 2 1 6 6 C 1.53000 * 109.46864 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47118 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47118 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46921 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99841 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99805 * 179.97438 * 9 8 7 12 12 C 1.47885 * 134.33936 * 179.97438 * 11 9 8 13 13 C 1.52368 * 85.58964 * 156.48622 * 12 11 9 14 14 C 1.47887 * 134.34262 * 359.96292 * 11 9 8 15 15 C 1.53658 * 116.39717 * 141.35074 * 13 12 11 16 16 C 1.54607 * 102.73022 * 162.91744 * 15 13 12 17 17 N 1.47137 * 107.36428 * 339.24245 * 16 15 13 18 18 C 1.36938 * 125.58257 * 179.11256 * 17 16 15 19 19 H 1.08002 * 119.99870 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00021 * 359.97336 * 18 17 16 21 21 N 1.31613 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99551 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47081 * 90.00589 * 22 20 18 24 24 H 1.48508 * 109.46873 * 210.00041 * 22 20 18 25 25 H 1.48498 * 109.47609 * 329.99978 * 22 20 18 26 26 C 1.47725 * 108.82669 * 359.07915 * 17 16 15 27 27 H 1.09001 * 109.46790 * 300.00204 * 1 2 3 28 28 H 1.09000 * 109.47252 * 60.00081 * 1 2 3 29 29 H 1.09000 * 109.46685 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46790 * 239.99796 * 2 1 3 31 31 H 1.08997 * 109.47207 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46861 * 299.99628 * 3 2 1 33 33 H 1.08994 * 109.47880 * 59.99675 * 3 2 1 34 34 H 1.08997 * 109.47378 * 54.99409 * 4 2 1 35 35 H 1.09007 * 109.46850 * 294.99839 * 4 2 1 36 36 H 1.08990 * 109.47407 * 59.99895 * 5 4 2 37 37 H 1.08997 * 109.47050 * 299.99297 * 5 4 2 38 38 H 1.09002 * 109.47739 * 59.99374 * 6 5 4 39 39 H 1.09007 * 109.46850 * 299.99527 * 6 5 4 40 40 H 1.08996 * 109.46716 * 59.99721 * 7 6 5 41 41 H 1.09004 * 109.46773 * 300.00072 * 7 6 5 42 42 H 1.08998 * 109.47032 * 59.99699 * 8 7 6 43 43 H 1.09007 * 109.46850 * 299.99720 * 8 7 6 44 44 H 1.09005 * 113.85578 * 42.32235 * 12 11 9 45 45 H 1.09009 * 113.97216 * 270.66636 * 12 11 9 46 46 H 1.08995 * 113.85518 * 89.34905 * 14 11 9 47 47 H 1.09002 * 113.85341 * 317.67535 * 14 11 9 48 48 H 1.08993 * 110.76200 * 44.60660 * 15 13 12 49 49 H 1.09003 * 110.75888 * 281.22670 * 15 13 12 50 50 H 1.08997 * 109.86564 * 98.69116 * 16 15 13 51 51 H 1.09000 * 109.86527 * 219.65895 * 16 15 13 52 52 H 0.97004 * 119.99629 * 179.97438 * 21 20 18 53 53 H 1.08994 * 110.39981 * 141.25248 * 26 17 16 54 54 H 1.09000 * 110.39188 * 263.54275 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8309 1.1879 6 6 4.0749 -1.5528 2.4369 7 6 5.5997 -1.6630 2.3753 8 6 6.1097 -2.3843 3.6245 9 6 7.6115 -2.4935 3.5636 10 8 8.2145 -2.0387 2.6146 11 7 8.2845 -3.0955 4.5641 12 6 9.7128 -3.3734 4.8284 13 6 9.3081 -3.4338 6.2961 14 6 7.8886 -3.7410 5.8344 15 6 9.9959 -4.5097 7.1507 16 6 9.7233 -4.0247 8.5933 17 7 9.4133 -2.5881 8.5223 18 6 9.0964 -1.7879 9.5874 19 1 8.8844 -0.7404 9.4315 20 6 9.0475 -2.3229 10.8673 21 7 9.3063 -3.5993 11.0573 22 14 8.6144 -1.2313 12.3200 23 1 7.1440 -1.2435 12.5273 24 1 9.2906 -1.7401 13.5404 25 1 9.0645 0.1573 12.0473 26 6 9.5008 -2.1505 7.1141 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6054 -1.7197 1.2952 35 1 1.7517 -0.1582 2.1370 36 1 3.9995 0.1675 1.1420 37 1 3.8533 -1.3939 0.3003 38 1 3.6402 -2.5513 2.4824 39 1 3.7865 -0.9901 3.3249 40 1 6.0345 -0.6646 2.3296 41 1 5.8877 -2.2258 1.4873 42 1 5.6747 -3.3827 3.6707 43 1 5.8217 -1.8211 4.5123 44 1 10.3755 -2.5420 4.5878 45 1 10.0604 -4.3256 4.4274 46 1 7.6765 -4.8059 5.7404 47 1 7.1192 -3.1982 6.3835 48 1 11.0665 -4.5377 6.9484 49 1 9.5436 -5.4865 6.9796 50 1 8.8753 -4.5665 9.0121 51 1 10.6068 -4.1851 9.2111 52 1 9.2725 -3.9731 11.9518 53 1 8.7108 -1.4341 6.8891 54 1 10.4784 -1.7126 6.9126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148390331.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:07 Heat of formation + Delta-G solvation = -30.562912 kcal Electronic energy + Delta-G solvation = -27119.190349 eV Core-core repulsion = 23476.729548 eV Total energy + Delta-G solvation = -3642.460801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77115 -39.73224 -38.20612 -37.22165 -35.70221 -34.10367 -32.27496 -31.28788 -29.92273 -28.10294 -27.98447 -27.36144 -26.96715 -25.29638 -23.40223 -22.09970 -21.83103 -20.74406 -20.32744 -19.51240 -18.79716 -17.79489 -17.16004 -17.05699 -16.66144 -16.49291 -15.88006 -15.81477 -15.56259 -15.16737 -15.06205 -14.59069 -14.24867 -14.19774 -13.98934 -13.73536 -13.61982 -13.40552 -13.20989 -13.04669 -12.96192 -12.86776 -12.75974 -12.74845 -12.42351 -12.37961 -12.08726 -12.02533 -11.93549 -11.92901 -11.72573 -11.65451 -11.53532 -11.44077 -11.28716 -11.25060 -11.17938 -10.69888 -10.62442 -9.69355 -8.86995 -7.83126 -5.17861 1.47352 1.48247 1.56873 1.63542 1.83749 2.50117 3.27991 3.36898 3.49018 3.67505 3.74678 3.79056 3.96388 4.05171 4.09314 4.12204 4.15835 4.20926 4.33897 4.41246 4.47823 4.58205 4.60935 4.64749 4.65700 4.73373 4.75478 4.79328 4.80148 4.82373 4.90746 4.92168 4.98216 4.99757 5.02985 5.06904 5.10394 5.12985 5.13853 5.17902 5.24201 5.28847 5.37626 5.38593 5.46699 5.47532 5.58196 5.59031 5.73884 5.83687 6.22778 6.72495 7.13710 7.14188 7.79581 8.43497 9.26547 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.002133 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.778559 B =13124.982130 C =14606.645296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.097 4.097 8 C -0.129 4.129 9 C 0.526 3.474 10 O -0.593 6.593 11 N -0.644 5.644 12 C 0.126 3.874 13 C -0.099 4.099 14 C 0.130 3.870 15 C -0.113 4.113 16 C 0.184 3.816 17 N -0.624 5.624 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.974 3.026 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.160 3.840 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.018 0.982 51 H 0.004 0.996 52 H 0.247 0.753 53 H 0.033 0.967 54 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 0.249 -20.221 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.135 4.135 8 C -0.169 4.169 9 C 0.318 3.682 10 O -0.474 6.474 11 N -0.379 5.379 12 C 0.003 3.997 13 C -0.101 4.101 14 C 0.008 3.992 15 C -0.151 4.151 16 C 0.060 3.940 17 N -0.351 5.351 18 C -0.370 4.370 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.803 3.197 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.034 3.966 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.114 0.886 50 H 0.036 0.964 51 H 0.022 0.978 52 H 0.056 0.944 53 H 0.051 0.949 54 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.197 0.585 -20.656 24.519 hybrid contribution 0.208 0.647 1.259 1.430 sum -12.989 1.232 -19.398 23.378 Atomic orbital electron populations 1.21840 0.94873 1.01879 1.01828 1.21148 0.95999 0.96337 0.98355 1.21900 1.01051 0.96086 1.01709 1.21631 0.94920 1.00605 0.97759 1.21617 0.95774 1.00492 0.97794 1.21573 0.93440 1.01469 0.98607 1.21279 0.96049 0.99975 0.96203 1.21679 0.89159 1.04529 1.01516 1.21063 0.91126 0.76356 0.79684 1.90652 1.71623 1.50751 1.34392 1.50359 1.09828 1.56540 1.21154 1.23018 0.83320 1.02194 0.91144 1.22299 0.96944 0.97143 0.93725 1.23118 0.96580 0.99337 0.80117 1.22526 1.00771 0.97914 0.93902 1.20997 0.97036 0.83408 0.92596 1.44837 1.81670 1.06641 1.01925 1.19371 1.39283 0.92153 0.86191 0.90577 1.25565 1.02586 0.97616 0.99808 1.70165 1.56347 1.12360 1.20698 0.85145 0.77595 0.78105 0.78870 1.21100 1.22139 1.19868 1.21115 0.97557 0.94104 0.83775 0.92786 0.92491 0.92469 0.91461 0.92809 0.92569 0.92854 0.91643 0.92129 0.92306 0.92207 0.90886 0.91635 0.93135 0.92333 0.86885 0.88236 0.90937 0.86959 0.86562 0.90223 0.90406 0.88580 0.96394 0.97769 0.94389 0.94905 0.96185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.10 -1.23 2.92 -10.79 -0.03 -1.26 16 3 C -0.15 -1.90 8.95 71.98 0.64 -1.25 16 4 C -0.11 -1.44 4.68 30.59 0.14 -1.29 16 5 C -0.12 -1.76 4.97 30.59 0.15 -1.60 16 6 C -0.11 -1.74 5.21 30.60 0.16 -1.58 16 7 C -0.10 -1.98 4.50 30.60 0.14 -1.84 16 8 C -0.13 -2.70 5.44 29.85 0.16 -2.54 16 9 C 0.53 15.23 8.06 87.66 0.71 15.94 16 10 O -0.59 -21.65 16.71 -3.05 -0.05 -21.70 16 11 N -0.64 -17.51 3.62 -863.69 -3.12 -20.64 16 12 C 0.13 3.27 8.21 85.90 0.71 3.97 16 13 C -0.10 -2.99 0.99 -52.15 -0.05 -3.04 16 14 C 0.13 3.30 7.92 85.91 0.68 3.98 16 15 C -0.11 -3.53 6.36 31.36 0.20 -3.33 16 16 C 0.18 8.50 5.39 86.80 0.47 8.96 16 17 N -0.62 -30.88 3.41 -693.35 -2.36 -33.24 16 18 C -0.24 -13.27 10.28 84.03 0.86 -12.41 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 20 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 21 N -0.95 -55.39 10.30 21.65 0.22 -55.17 16 22 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.16 6.32 6.63 86.28 0.57 6.90 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.73 6.57 -2.39 -0.02 0.71 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 36 H 0.06 0.94 6.56 -2.39 -0.02 0.92 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 41 H 0.06 1.29 8.10 -2.38 -0.02 1.27 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 45 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.12 2.30 8.04 -2.39 -0.02 2.28 16 47 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 48 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.10 2.45 7.99 -2.39 -0.02 2.43 16 50 H 0.02 0.91 7.39 -2.39 -0.02 0.90 16 51 H 0.00 0.22 7.49 -2.39 -0.02 0.20 16 52 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 53 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 54 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -68.76 421.07 4.17 -64.60 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.81 Total: 13.33 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.64 Total: 5.64 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -5.26 Total: -109.05 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.76 4.17 -64.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148390331.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.035 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds