Wall clock time and date at job start Tue Mar 31 2020 14:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47683 * 2 1 4 4 C 1.53007 * 109.47130 * 120.00329 * 2 1 3 5 5 C 1.52997 * 109.47264 * 63.45932 * 4 2 1 6 6 H 1.09002 * 115.54790 * 30.21184 * 5 4 2 7 7 C 1.53003 * 117.49824 * 244.50801 * 5 4 2 8 8 C 1.52998 * 117.50022 * 175.88606 * 5 4 2 9 9 H 1.08999 * 117.49720 * 359.97014 * 8 5 4 10 10 C 1.50701 * 117.49543 * 214.97837 * 8 5 4 11 11 O 1.21280 * 120.00354 * 4.40882 * 10 8 5 12 12 N 1.34786 * 119.99617 * 184.40840 * 10 8 5 13 13 C 1.46921 * 120.63066 * 4.67079 * 12 10 8 14 14 C 1.53197 * 108.77515 * 233.63046 * 13 12 10 15 15 C 1.53039 * 109.31029 * 305.36561 * 14 13 12 16 16 C 1.53044 * 109.53983 * 61.36316 * 15 14 13 17 17 C 1.46923 * 120.62642 * 184.69178 * 12 10 8 18 18 H 1.09010 * 109.70166 * 246.22646 * 17 12 10 19 19 C 1.52996 * 109.59093 * 6.58246 * 17 12 10 20 20 N 1.46499 * 109.47440 * 177.91706 * 19 17 12 21 21 C 1.46505 * 119.99798 * 271.99042 * 20 19 17 22 22 C 1.36936 * 120.00306 * 91.98288 * 20 19 17 23 23 H 1.07998 * 119.99784 * 33.26724 * 22 20 19 24 24 C 1.38814 * 120.00157 * 213.26755 * 22 20 19 25 25 N 1.31613 * 119.99799 * 5.81452 * 24 22 20 26 26 Si 1.86799 * 120.00078 * 185.81553 * 24 22 20 27 27 H 1.48501 * 109.47155 * 64.99399 * 26 24 22 28 28 H 1.48496 * 109.47192 * 185.00069 * 26 24 22 29 29 H 1.48505 * 109.47020 * 305.00079 * 26 24 22 30 30 H 1.09002 * 109.47472 * 184.88599 * 1 2 3 31 31 H 1.09001 * 109.47175 * 304.88287 * 1 2 3 32 32 H 1.08996 * 109.46931 * 64.88228 * 1 2 3 33 33 H 1.09000 * 109.47297 * 239.99902 * 2 1 3 34 34 H 1.08998 * 109.47391 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47204 * 300.00244 * 3 2 1 36 36 H 1.09001 * 109.47082 * 60.00100 * 3 2 1 37 37 H 1.09002 * 109.46809 * 303.45514 * 4 2 1 38 38 H 1.09004 * 109.47327 * 183.45811 * 4 2 1 39 39 H 1.08996 * 117.50392 * 145.02181 * 7 5 4 40 40 H 1.09000 * 117.49731 * 359.97438 * 7 5 4 41 41 H 1.08992 * 109.59020 * 113.84146 * 13 12 10 42 42 H 1.09001 * 109.59112 * 353.41240 * 13 12 10 43 43 H 1.08999 * 109.50017 * 65.31174 * 14 13 12 44 44 H 1.08990 * 109.49703 * 185.41516 * 14 13 12 45 45 H 1.08997 * 109.46151 * 181.38645 * 15 14 13 46 46 H 1.09005 * 109.45773 * 301.36012 * 15 14 13 47 47 H 1.08998 * 109.49771 * 58.58790 * 16 15 14 48 48 H 1.09003 * 109.49725 * 178.65017 * 16 15 14 49 49 H 1.09007 * 109.47204 * 297.91441 * 19 17 12 50 50 H 1.09001 * 109.47223 * 57.91076 * 19 17 12 51 51 H 1.08994 * 109.46906 * 86.01124 * 21 20 19 52 52 H 1.08997 * 109.47095 * 206.01277 * 21 20 19 53 53 H 1.09000 * 109.47124 * 326.01193 * 21 20 19 54 54 H 0.97002 * 119.99897 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.6023 -2.1868 1.2064 6 1 1.4988 -2.6176 0.2105 7 6 0.6325 -2.6663 2.2884 8 6 2.0978 -3.1050 2.3254 9 1 2.7360 -2.6653 3.0918 10 6 2.4049 -4.5361 1.9663 11 8 2.3335 -4.9004 0.8118 12 7 2.7591 -5.4111 2.9284 13 6 2.7513 -5.0125 4.3425 14 6 4.1250 -5.3175 4.9483 15 6 4.4664 -6.7906 4.7123 16 6 4.5295 -7.0668 3.2083 17 6 3.1605 -6.7815 2.5829 18 1 2.4270 -7.4883 2.9711 19 6 3.2523 -6.9211 1.0621 20 7 3.7007 -8.2737 0.7219 21 6 5.1327 -8.5696 0.6317 22 6 2.7815 -9.2614 0.4885 23 1 1.8335 -9.0196 0.0312 24 6 3.0681 -10.5735 0.8398 25 7 4.1723 -10.8518 1.4996 26 14 1.8865 -11.9439 0.3759 27 1 1.8320 -12.0712 -1.1026 28 1 2.3561 -13.2232 0.9660 29 1 0.5320 -11.6267 0.8956 30 1 -0.3634 -1.0239 0.0875 31 1 -0.3633 0.5877 0.8430 32 1 -0.3633 0.4362 -0.9305 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6269 -0.2445 2.1382 38 1 3.1283 -0.6680 1.2808 39 1 -0.1093 -3.4127 2.0045 40 1 0.3067 -1.9379 3.0309 41 1 1.9840 -5.5733 4.8761 42 1 2.5469 -3.9447 4.4201 43 1 4.8792 -4.6890 4.4748 44 1 4.1031 -5.1162 6.0192 45 1 5.4324 -7.0164 5.1639 46 1 3.6985 -7.4182 5.1646 47 1 5.2799 -6.4218 2.7512 48 1 4.7962 -8.1104 3.0410 49 1 2.2718 -6.7418 0.6209 50 1 3.9645 -6.1935 0.6727 51 1 5.5147 -8.8214 1.6210 52 1 5.2879 -9.4116 -0.0429 53 1 5.6609 -7.6959 0.2498 54 1 4.3725 -11.7686 1.7453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158512443.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:27 Heat of formation + Delta-G solvation = -12.847340 kcal Electronic energy + Delta-G solvation = -29048.274515 eV Core-core repulsion = 25406.581919 eV Total energy + Delta-G solvation = -3641.692596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64541 -39.33137 -37.99772 -37.27003 -35.82982 -33.81140 -33.69650 -31.74239 -28.78822 -28.25271 -27.92809 -27.61419 -26.00785 -24.79311 -23.66117 -22.41731 -21.87917 -21.31202 -20.82915 -19.72118 -18.82243 -17.85023 -17.15357 -16.71520 -16.44020 -15.93032 -15.78242 -15.53482 -15.36641 -15.11550 -14.87135 -14.75486 -14.55161 -14.36480 -14.10982 -13.99398 -13.79629 -13.36634 -13.27177 -12.96647 -12.82758 -12.79897 -12.67434 -12.57267 -12.35800 -12.30703 -12.21826 -12.05388 -12.02141 -11.85460 -11.76248 -11.73537 -11.54913 -11.46313 -11.33281 -11.01695 -10.76808 -10.64275 -10.11263 -9.46740 -8.62092 -7.86045 -5.42451 1.42429 1.44680 1.51687 1.59816 2.03074 2.49191 2.90230 3.27105 3.49803 3.75907 3.81119 3.88602 3.92330 3.98913 4.05633 4.11623 4.15365 4.20054 4.24551 4.33826 4.41274 4.53745 4.62774 4.64219 4.69503 4.79510 4.81828 4.86165 4.87229 4.89221 4.92705 4.99629 5.02634 5.04494 5.10422 5.13566 5.14294 5.21363 5.22381 5.24655 5.30043 5.34427 5.37099 5.44996 5.47942 5.52337 5.59132 5.61201 5.67797 5.81431 6.37082 6.60972 7.15355 7.32302 7.85735 8.36141 9.17091 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.003210 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.542669 B = 8721.453054 C = 9728.849325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.075 4.075 5 C -0.118 4.118 6 H 0.083 0.917 7 C -0.132 4.132 8 C -0.189 4.189 9 H 0.152 0.848 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.603 5.603 13 C 0.102 3.898 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.138 3.862 18 H 0.038 0.962 19 C 0.179 3.821 20 N -0.614 5.614 21 C 0.174 3.826 22 C -0.274 4.274 23 H 0.049 0.951 24 C -0.035 4.035 25 N -0.926 5.926 26 Si 0.966 3.034 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.030 0.970 51 H 0.018 0.982 52 H 0.019 0.981 53 H 0.009 0.991 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 24.327 9.058 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.112 4.112 5 C -0.137 4.137 6 H 0.101 0.899 7 C -0.169 4.169 8 C -0.210 4.210 9 H 0.169 0.831 10 C 0.316 3.684 11 O -0.459 6.459 12 N -0.335 5.335 13 C -0.019 4.019 14 C -0.162 4.162 15 C -0.154 4.154 16 C -0.152 4.152 17 C 0.033 3.967 18 H 0.056 0.944 19 C 0.053 3.947 20 N -0.338 5.338 21 C 0.029 3.971 22 C -0.404 4.404 23 H 0.067 0.933 24 C -0.232 4.232 25 N -0.570 5.570 26 Si 0.793 3.207 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.155 0.845 41 H 0.088 0.912 42 H 0.136 0.864 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.048 0.952 51 H 0.036 0.964 52 H 0.038 0.962 53 H 0.027 0.973 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.707 23.980 8.510 25.714 hybrid contribution -0.297 -1.759 -0.612 1.886 sum -4.005 22.221 7.899 23.921 Atomic orbital electron populations 1.21833 0.94858 1.01669 1.01888 1.21106 0.96347 0.96533 0.97633 1.21810 1.00956 0.95103 1.02261 1.21243 1.00745 0.90307 0.98954 1.22359 1.02052 0.95212 0.94043 0.89863 1.23168 0.89273 1.02714 1.01781 1.22354 1.01806 0.90999 1.05801 0.83060 1.20523 0.75722 0.87650 0.84533 1.90740 1.54190 1.78983 1.21954 1.48393 1.65684 1.11330 1.08109 1.22051 0.98177 1.02614 0.79093 1.21897 0.96574 0.95246 1.02471 1.21512 1.01894 0.97710 0.94256 1.21825 0.95493 1.01268 0.96655 1.21828 0.95485 0.81395 0.98029 0.94393 1.21266 0.97998 0.83985 0.91441 1.44277 1.02216 1.07000 1.80340 1.20641 0.83548 0.94858 0.98027 1.19270 0.98687 0.88522 1.33968 0.93286 1.25929 0.99080 1.00232 0.97933 1.70119 1.26229 1.18634 1.42056 0.85389 0.78899 0.78552 0.77834 1.20738 1.21152 1.20219 0.93316 0.91579 0.93065 0.92906 0.92716 0.92632 0.91658 0.89461 0.91466 0.90238 0.84496 0.91190 0.86442 0.91438 0.87662 0.91059 0.92777 0.93358 0.92360 0.93511 0.95167 0.96377 0.96168 0.97278 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.07 71.98 0.65 -1.42 16 2 C -0.10 -1.47 2.90 -10.79 -0.03 -1.50 16 3 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 4 C -0.08 -1.10 4.98 30.60 0.15 -0.95 16 5 C -0.12 -2.43 4.08 -10.79 -0.04 -2.47 16 6 H 0.08 2.33 7.62 -2.39 -0.02 2.31 16 7 C -0.13 -2.32 9.88 30.60 0.30 -2.01 16 8 C -0.19 -4.05 4.58 -11.54 -0.05 -4.10 16 9 H 0.15 2.26 7.00 -2.39 -0.02 2.25 16 10 C 0.53 17.49 7.32 87.66 0.64 18.14 16 11 O -0.58 -25.09 11.80 -3.03 -0.04 -25.12 16 12 N -0.60 -19.45 2.97 -795.03 -2.36 -21.81 16 13 C 0.10 2.17 6.35 86.37 0.55 2.72 16 14 C -0.12 -2.48 6.08 30.67 0.19 -2.29 16 15 C -0.12 -3.29 5.88 30.62 0.18 -3.11 16 16 C -0.11 -4.41 4.44 30.67 0.14 -4.27 16 17 C 0.14 5.82 3.21 44.97 0.14 5.96 16 18 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 19 C 0.18 8.95 3.69 86.38 0.32 9.27 16 20 N -0.61 -34.44 2.64 -726.94 -1.92 -36.36 16 21 C 0.17 9.34 8.05 127.77 1.03 10.37 16 22 C -0.27 -16.47 9.54 84.03 0.80 -15.67 16 23 H 0.05 3.00 7.83 -2.91 -0.02 2.98 16 24 C -0.04 -2.05 5.17 84.86 0.44 -1.61 16 25 N -0.93 -55.58 11.06 21.65 0.24 -55.34 16 26 Si 0.97 46.97 29.56 68.60 2.03 49.00 16 27 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 29 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 30 H 0.05 0.81 7.17 -2.39 -0.02 0.79 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 0.91 7.88 -2.39 -0.02 0.89 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.14 1.43 8.03 -2.39 -0.02 1.41 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.12 1.65 5.69 -2.39 -0.01 1.64 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.06 2.76 5.63 -2.39 -0.01 2.75 16 49 H 0.05 2.57 6.17 -2.38 -0.01 2.56 16 50 H 0.03 1.54 7.01 -2.39 -0.02 1.52 16 51 H 0.02 1.00 5.62 -2.39 -0.01 0.98 16 52 H 0.02 1.14 7.26 -2.39 -0.02 1.12 16 53 H 0.01 0.43 7.96 -2.39 -0.02 0.42 16 54 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.97 405.09 4.85 -68.12 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.84 Total: 15.51 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.07 Total: 6.01 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -4.05 Total: -113.52 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.04 Total: -25.12 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -72.97 4.85 -68.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158512443.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds