Wall clock time and date at job start Tue Mar 31 2020 13:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 C 1.52997 * 109.47404 * 180.02562 * 5 4 2 7 7 N 1.46904 * 109.47462 * 180.02562 * 6 5 4 8 8 C 1.47658 * 111.00103 * 69.87164 * 7 6 5 9 9 C 1.54523 * 107.05142 * 123.12716 * 8 7 6 10 10 C 1.54879 * 102.59673 * 22.99744 * 9 8 7 11 11 H 1.09006 * 110.41869 * 80.15616 * 10 9 8 12 12 C 1.48268 * 111.00179 * 190.44352 * 7 6 5 13 13 H 1.09003 * 111.35787 * 92.74030 * 12 7 6 14 14 C 1.54917 * 108.80549 * 328.64712 * 12 7 6 15 15 C 1.52893 * 109.57533 * 182.99396 * 14 12 7 16 16 C 1.50340 * 109.30465 * 53.00304 * 15 14 12 17 17 O 1.21282 * 118.80702 * 158.31871 * 16 15 14 18 18 N 1.33350 * 122.40071 * 338.33541 * 16 15 14 19 19 C 1.46506 * 117.29195 * 179.75910 * 18 16 15 20 20 C 1.52992 * 109.47134 * 270.02157 * 19 18 16 21 21 C 1.50700 * 109.47090 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00175 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99932 * 179.97438 * 21 20 19 24 24 N 1.31521 * 120.00263 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00369 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47250 * 89.99435 * 25 23 21 27 27 H 1.48499 * 109.47456 * 209.99957 * 25 23 21 28 28 H 1.48507 * 109.46695 * 330.00141 * 25 23 21 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 37 37 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 38 38 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 39 39 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 40 40 H 1.09000 * 109.47325 * 300.00168 * 6 5 4 41 41 H 1.08995 * 109.47630 * 59.99990 * 6 5 4 42 42 H 1.09004 * 109.91813 * 242.47850 * 8 7 6 43 43 H 1.08996 * 109.92078 * 3.77367 * 8 7 6 44 44 H 1.09006 * 110.78336 * 141.26825 * 9 8 7 45 45 H 1.08993 * 110.78308 * 264.52979 * 9 8 7 46 46 H 1.09008 * 109.25144 * 63.04071 * 14 12 7 47 47 H 1.08998 * 109.49298 * 303.10065 * 14 12 7 48 48 H 1.08997 * 109.50151 * 293.05099 * 15 14 12 49 49 H 1.09003 * 109.49380 * 172.94425 * 15 14 12 50 50 H 1.08995 * 109.46626 * 30.02608 * 19 18 16 51 51 H 1.09005 * 109.47047 * 150.01942 * 19 18 16 52 52 H 1.09004 * 109.47155 * 299.99784 * 20 19 18 53 53 H 1.08997 * 109.47060 * 59.99927 * 20 19 18 54 54 H 0.96994 * 120.00388 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 6 2.1457 -2.9167 -2.4370 7 7 1.7565 -4.3321 -2.3786 8 6 0.2986 -4.4877 -2.5529 9 6 0.0844 -5.4294 -3.7591 10 6 1.4218 -6.2080 -3.8214 11 1 1.4293 -7.0107 -3.0839 12 6 2.4393 -5.1150 -3.4365 13 1 3.3693 -5.5503 -3.0705 14 6 2.6670 -4.2007 -4.6661 15 6 3.3034 -5.0107 -5.7960 16 6 2.4730 -6.2364 -6.0574 17 8 2.5645 -6.7854 -7.1350 18 7 1.6393 -6.7421 -5.1478 19 6 0.8802 -7.9376 -5.5233 20 6 -0.4450 -7.5199 -6.1637 21 6 -1.2255 -8.7496 -6.5505 22 1 -0.8174 -9.7309 -6.3584 23 6 -2.4611 -8.6220 -7.1488 24 7 -3.1422 -9.6952 -7.4868 25 14 -3.1675 -6.9248 -7.4805 26 1 -2.7438 -6.4670 -8.8282 27 1 -4.6501 -6.9854 -7.4217 28 1 -2.6699 -5.9726 -6.4553 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -0.2617 -2.1370 37 1 3.1263 -0.6443 -1.2952 38 1 2.0698 -2.6550 -0.3004 39 1 0.5488 -2.2723 -1.1421 40 1 1.7114 -2.4573 -3.3250 41 1 3.2320 -2.8399 -2.4826 42 1 -0.1378 -4.9277 -1.6561 43 1 -0.1571 -3.5180 -2.7533 44 1 -0.7497 -6.1073 -3.5772 45 1 -0.0764 -4.8573 -4.6727 46 1 3.3305 -3.3819 -4.3873 47 1 1.7115 -3.7972 -5.0013 48 1 4.3112 -5.3088 -5.5071 49 1 3.3482 -4.4022 -6.6993 50 1 1.4584 -8.5262 -6.2355 51 1 0.6814 -8.5359 -4.6341 52 1 -1.0232 -6.9313 -5.4514 53 1 -0.2462 -6.9216 -7.0528 54 1 -4.0116 -9.6054 -7.9074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273423212.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:35 Heat of formation + Delta-G solvation = -72.677024 kcal Electronic energy + Delta-G solvation = -28807.628951 eV Core-core repulsion = 25163.341945 eV Total energy + Delta-G solvation = -3644.287006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15247 -39.91390 -37.90828 -36.86089 -35.33285 -34.40856 -33.51240 -31.93607 -30.46527 -29.13975 -27.97884 -27.03415 -26.22903 -24.76365 -23.38209 -23.11869 -22.13753 -20.89496 -20.71207 -19.37138 -18.82561 -17.92114 -17.51714 -16.99104 -16.58368 -16.47708 -16.05039 -15.71136 -15.39771 -15.17892 -15.06778 -14.86420 -14.70408 -14.58775 -14.20773 -14.00951 -13.82316 -13.56028 -13.34550 -13.23878 -13.05020 -12.96926 -12.86700 -12.60971 -12.41124 -12.34551 -12.27860 -12.18067 -12.01690 -11.94778 -11.76963 -11.71278 -11.55802 -11.47482 -11.41754 -11.24206 -11.16765 -10.82627 -10.58862 -9.69410 -9.27143 -8.35353 -6.39212 1.26984 1.29234 1.39962 1.61564 2.00614 2.28854 2.92891 2.99501 3.37646 3.49888 3.65182 3.79317 3.95016 4.03961 4.09453 4.12976 4.14932 4.21545 4.30552 4.31457 4.36466 4.39530 4.49663 4.55402 4.66609 4.72079 4.74143 4.79664 4.82324 4.82923 4.83149 4.87423 4.88505 4.97832 4.98424 5.03331 5.05767 5.10031 5.15039 5.22813 5.27180 5.33725 5.35765 5.39002 5.42319 5.43783 5.57607 5.62478 5.64346 5.92389 6.13005 6.19750 6.57569 6.66784 7.18927 7.25190 8.81271 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003064 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.042592 B = 9136.892931 C =10302.214242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.048 3.952 7 N -0.517 5.517 8 C 0.051 3.949 9 C -0.157 4.157 10 C 0.133 3.867 11 H 0.102 0.898 12 C 0.077 3.923 13 H 0.122 0.878 14 C -0.139 4.139 15 C -0.120 4.120 16 C 0.499 3.501 17 O -0.603 6.603 18 N -0.587 5.587 19 C 0.127 3.873 20 C -0.008 4.008 21 C -0.530 4.530 22 H 0.037 0.963 23 C 0.010 3.990 24 N -0.945 5.945 25 Si 0.947 3.053 26 H -0.278 1.278 27 H -0.275 1.275 28 H -0.247 1.247 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.111 0.889 47 H 0.057 0.943 48 H 0.125 0.875 49 H 0.103 0.897 50 H 0.053 0.947 51 H 0.082 0.918 52 H 0.033 0.967 53 H -0.007 1.007 54 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.484 23.952 18.539 33.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.079 4.079 7 N -0.240 5.240 8 C -0.077 4.077 9 C -0.197 4.197 10 C 0.028 3.972 11 H 0.120 0.880 12 C -0.032 4.032 13 H 0.139 0.861 14 C -0.177 4.177 15 C -0.160 4.160 16 C 0.289 3.711 17 O -0.485 6.485 18 N -0.316 5.316 19 C 0.004 3.996 20 C -0.046 4.046 21 C -0.568 4.568 22 H 0.055 0.945 23 C -0.188 4.188 24 N -0.586 5.586 25 Si 0.770 3.230 26 H -0.204 1.204 27 H -0.200 1.200 28 H -0.170 1.170 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.130 0.870 47 H 0.076 0.924 48 H 0.143 0.857 49 H 0.122 0.878 50 H 0.071 0.929 51 H 0.100 0.900 52 H 0.051 0.949 53 H 0.012 0.988 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.536 23.468 18.461 32.784 hybrid contribution -1.260 0.084 -1.614 2.049 sum 12.276 23.552 16.847 31.452 Atomic orbital electron populations 1.21902 0.95607 1.01731 1.01514 1.21107 0.95656 0.96309 0.98440 1.21842 1.01136 0.95814 1.01691 1.21571 1.01144 0.94366 0.97632 1.21578 1.00940 0.94588 0.97743 1.22420 1.01507 0.86445 0.97570 1.63970 1.05171 1.10597 1.44304 1.22860 0.89087 0.98695 0.97019 1.23292 0.98301 0.99028 0.99057 1.21864 0.95537 0.97097 0.82657 0.88022 1.23194 0.97542 0.92333 0.90094 0.86060 1.22540 1.01815 0.99230 0.94147 1.21602 1.00032 0.92704 1.01690 1.21134 0.80115 0.86826 0.83013 1.90721 1.68787 1.62952 1.26076 1.47118 1.40937 1.28930 1.14660 1.21304 0.91968 0.86622 0.99679 1.19707 0.93854 0.95663 0.95373 1.21298 1.02692 0.93183 1.39642 0.94482 1.25906 0.97272 1.00873 0.94701 1.70045 1.14366 1.30932 1.43243 0.85718 0.77642 0.80281 0.79330 1.20396 1.20036 1.17046 0.93084 0.92655 0.92797 0.91294 0.92696 0.92345 0.92910 0.92356 0.91302 0.91493 0.92323 0.94314 0.89305 0.89409 0.91682 0.91083 0.92686 0.87026 0.92440 0.85743 0.87816 0.92876 0.90015 0.94859 0.98836 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 71.98 0.64 -1.02 16 2 C -0.10 -0.98 2.92 -10.79 -0.03 -1.01 16 3 C -0.15 -1.36 9.19 71.98 0.66 -0.70 16 4 C -0.11 -1.08 4.68 30.59 0.14 -0.93 16 5 C -0.11 -1.27 5.00 30.59 0.15 -1.12 16 6 C 0.05 0.59 3.36 86.30 0.29 0.88 16 7 N -0.52 -8.33 5.16 -856.18 -4.41 -12.74 16 8 C 0.05 0.96 6.18 86.68 0.54 1.49 16 9 C -0.16 -4.03 4.70 31.75 0.15 -3.88 16 10 C 0.13 3.32 3.14 46.39 0.15 3.47 16 11 H 0.10 2.44 8.01 -2.38 -0.02 2.42 16 12 C 0.08 1.35 3.56 45.72 0.16 1.52 16 13 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.14 -2.31 3.94 31.21 0.12 -2.19 16 15 C -0.12 -2.57 6.09 29.70 0.18 -2.39 16 16 C 0.50 17.19 7.47 87.77 0.66 17.84 16 17 O -0.60 -27.55 16.20 -3.03 -0.05 -27.60 16 18 N -0.59 -19.66 2.51 -798.78 -2.01 -21.67 16 19 C 0.13 5.41 5.06 86.38 0.44 5.85 16 20 C -0.01 -0.39 4.14 29.85 0.12 -0.26 16 21 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 22 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 23 C 0.01 0.60 5.47 84.65 0.46 1.06 16 24 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 25 Si 0.95 46.30 27.47 68.60 1.88 48.18 16 26 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.65 6.57 -2.39 -0.02 0.63 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.76 5.57 -2.38 -0.01 0.75 16 40 H 0.04 0.51 6.80 -2.39 -0.02 0.50 16 41 H 0.09 0.88 7.35 -2.39 -0.02 0.87 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.13 6.92 -2.39 -0.02 1.11 16 44 H 0.07 2.05 7.37 -2.38 -0.02 2.03 16 45 H 0.05 1.60 7.35 -2.39 -0.02 1.59 16 46 H 0.11 1.20 6.49 -2.38 -0.02 1.18 16 47 H 0.06 1.16 6.58 -2.39 -0.02 1.14 16 48 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.05 2.55 7.14 -2.39 -0.02 2.53 16 51 H 0.08 3.20 7.90 -2.38 -0.02 3.19 16 52 H 0.03 1.56 5.17 -2.39 -0.01 1.55 16 53 H -0.01 -0.37 7.57 -2.39 -0.02 -0.38 16 54 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -74.86 398.49 1.59 -73.28 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.79 Total: 13.86 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.08 Total: -12.94 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -6.12 Total: -94.78 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.88 Total: 48.18 kcal Total: -74.86 1.59 -73.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273423212.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.599 kcal (2) G-P(sol) polarization free energy of solvation -74.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds