Wall clock time and date at job start Tue Mar 31 2020 13:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.52999 * 109.46626 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46691 * 179.97438 * 4 3 2 6 6 C 1.46921 * 124.35212 * 269.72257 * 5 4 3 7 7 C 1.53988 * 105.27016 * 163.47846 * 6 5 4 8 8 C 1.53988 * 102.37906 * 25.04684 * 7 6 5 9 9 C 1.34498 * 124.34969 * 90.02940 * 5 4 3 10 10 O 1.21283 * 124.94480 * 0.38198 * 9 5 4 11 11 C 1.52236 * 110.49695 * 142.74454 * 7 6 5 12 12 C 1.53247 * 109.42021 * 66.85316 * 11 7 6 13 13 C 1.53123 * 109.06984 * 56.40161 * 12 11 7 14 14 C 1.53041 * 109.35276 * 301.68091 * 13 12 11 15 15 N 1.45970 * 110.99684 * 266.93724 * 7 6 5 16 16 C 1.46904 * 110.99728 * 60.14656 * 15 7 6 17 17 C 1.53007 * 109.46645 * 169.99953 * 16 15 7 18 18 C 1.52997 * 109.46692 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46932 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99785 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00117 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00165 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47004 * 90.00039 * 23 21 19 25 25 H 1.48498 * 109.47408 * 209.99959 * 23 21 19 26 26 H 1.48501 * 109.47408 * 330.00052 * 23 21 19 27 27 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 30 30 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 33 33 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 4 3 2 35 35 H 1.09000 * 109.47160 * 60.00369 * 4 3 2 36 36 H 1.08995 * 110.27297 * 282.56571 * 6 5 4 37 37 H 1.08998 * 110.26679 * 44.63392 * 6 5 4 38 38 H 1.09005 * 110.50778 * 217.02354 * 8 7 6 39 39 H 1.08992 * 110.51460 * 94.31225 * 8 7 6 40 40 H 1.08994 * 109.47703 * 186.83392 * 11 7 6 41 41 H 1.08995 * 109.47922 * 306.85520 * 11 7 6 42 42 H 1.09002 * 109.53270 * 176.28381 * 12 11 7 43 43 H 1.09000 * 109.53604 * 296.44346 * 12 11 7 44 44 H 1.09003 * 109.49195 * 61.64631 * 13 12 11 45 45 H 1.09002 * 109.48958 * 181.68801 * 13 12 11 46 46 H 1.09002 * 109.47190 * 179.83665 * 14 13 12 47 47 H 1.09002 * 109.47030 * 299.83625 * 14 13 12 48 48 H 1.08996 * 109.47305 * 289.99438 * 16 15 7 49 49 H 1.08994 * 109.47402 * 50.00225 * 16 15 7 50 50 H 1.08996 * 109.46848 * 299.99765 * 17 16 15 51 51 H 1.08994 * 109.46998 * 60.00024 * 17 16 15 52 52 H 1.09005 * 109.47301 * 299.99462 * 18 17 16 53 53 H 1.08994 * 109.47570 * 60.00141 * 18 17 16 54 54 H 0.97002 * 120.00484 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8239 0.0000 6 6 4.3405 3.6029 -1.2133 7 6 4.4079 5.0690 -0.7473 8 6 4.7921 4.9264 0.7370 9 6 4.3111 3.5399 1.1101 10 8 4.1745 3.1339 2.2448 11 6 5.4909 5.8209 -1.5085 12 6 5.0906 5.9365 -2.9832 13 6 3.7227 6.6180 -3.0783 14 6 2.6943 5.8034 -2.2903 15 7 3.1091 5.7212 -0.8828 16 6 2.0907 5.0393 -0.0728 17 6 0.8157 5.8845 -0.0395 18 6 -0.2447 5.1747 0.8046 19 6 -1.5008 6.0068 0.8369 20 1 -1.5387 6.9480 0.3085 21 6 -2.6011 5.5671 1.5417 22 7 -2.5548 4.4213 2.1855 23 14 -4.1578 6.5989 1.5823 24 1 -5.0380 6.2115 0.4507 25 1 -4.8704 6.3695 2.8648 26 1 -3.8025 8.0359 1.4637 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6765 1.9563 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 3.9329 0.9290 0.8908 35 1 3.9336 0.9287 -0.8891 36 1 5.2933 3.2971 -1.6451 37 1 3.5376 3.4752 -1.9393 38 1 4.2841 5.6812 1.3372 39 1 5.8724 5.0020 0.8609 40 1 5.6075 6.8182 -1.0843 41 1 6.4336 5.2796 -1.4289 42 1 5.8321 6.5311 -3.5167 43 1 5.0349 4.9415 -3.4248 44 1 3.7873 7.6231 -2.6613 45 1 3.4175 6.6768 -4.1231 46 1 1.7203 6.2885 -2.3543 47 1 2.6282 4.7992 -2.7090 48 1 1.8700 4.0659 -0.5107 49 1 2.4640 4.9049 0.9424 50 1 1.0364 6.8579 0.3984 51 1 0.4424 6.0190 -1.0547 52 1 -0.4656 4.2011 0.3670 53 1 0.1288 5.0406 1.8197 54 1 -3.3290 4.1117 2.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040717.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:30 Heat of formation + Delta-G solvation = -75.420562 kcal Electronic energy + Delta-G solvation = -30002.879283 eV Core-core repulsion = 26358.473308 eV Total energy + Delta-G solvation = -3644.405975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51814 -39.62301 -37.35434 -36.58477 -35.86368 -34.77065 -33.48237 -32.44075 -30.27103 -29.02286 -28.55143 -27.04731 -25.58433 -24.50271 -23.94005 -22.40123 -22.27552 -21.53636 -20.72400 -19.45039 -18.53520 -18.08392 -17.37534 -16.73274 -16.60351 -16.34979 -16.31213 -15.93079 -15.69485 -15.28167 -14.89554 -14.79387 -14.57936 -14.48901 -14.12621 -13.98375 -13.95320 -13.72250 -13.48859 -13.31387 -13.23499 -12.93753 -12.80348 -12.68866 -12.51688 -12.39113 -12.37590 -12.34382 -12.12707 -11.99600 -11.67689 -11.60587 -11.54075 -11.42599 -11.37473 -11.24178 -10.96831 -10.71284 -10.59201 -9.80730 -9.20662 -8.22651 -6.35377 1.35978 1.38469 1.48987 1.49735 2.01300 2.37518 2.78496 3.09801 3.30266 3.39545 3.76967 3.80987 3.85000 3.90745 3.99003 4.10549 4.14814 4.23595 4.27351 4.35145 4.38840 4.44007 4.48324 4.50134 4.59569 4.63059 4.65275 4.68509 4.74290 4.79106 4.85781 4.88069 4.91886 4.95532 5.02111 5.05677 5.12821 5.15403 5.16453 5.23254 5.24120 5.32512 5.36939 5.41432 5.46464 5.54438 5.59658 5.67201 5.80186 6.02600 6.09196 6.21547 6.26895 6.81223 7.09783 7.34355 8.89174 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.004607 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.786185 B = 6076.687220 C = 7729.360333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.131 4.131 4 C 0.128 3.872 5 N -0.616 5.616 6 C 0.074 3.926 7 C 0.108 3.892 8 C -0.145 4.145 9 C 0.505 3.495 10 O -0.587 6.587 11 C -0.092 4.092 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.047 3.953 15 N -0.522 5.522 16 C 0.072 3.928 17 C -0.089 4.089 18 C 0.035 3.965 19 C -0.542 4.542 20 H 0.061 0.939 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.028 0.972 49 H 0.043 0.957 50 H 0.049 0.951 51 H 0.057 0.943 52 H -0.016 1.016 53 H -0.026 1.026 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.910 -2.813 -15.278 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.170 4.170 4 C 0.007 3.993 5 N -0.348 5.348 6 C -0.050 4.050 7 C 0.017 3.983 8 C -0.185 4.185 9 C 0.294 3.706 10 O -0.467 6.467 11 C -0.130 4.130 12 C -0.154 4.154 13 C -0.149 4.149 14 C -0.080 4.080 15 N -0.245 5.245 16 C -0.055 4.055 17 C -0.126 4.126 18 C -0.003 4.003 19 C -0.580 4.580 20 H 0.080 0.920 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.186 1.186 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.075 0.925 52 H 0.003 0.997 53 H -0.007 1.007 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.771 -2.726 -14.441 24.635 hybrid contribution -1.788 -0.600 0.735 2.024 sum 17.984 -3.325 -13.706 22.854 Atomic orbital electron populations 1.21757 0.96603 1.01983 1.00741 1.21391 0.95229 0.94835 1.03248 1.21943 0.96320 0.98273 1.00445 1.21493 0.92744 0.81027 1.04039 1.48486 1.64607 1.14272 1.07434 1.23087 1.03365 0.91689 0.86830 1.21552 0.91512 0.91375 0.93831 1.22531 1.04964 0.93385 0.97610 1.21541 0.75931 0.88995 0.84114 1.90694 1.55960 1.76759 1.23320 1.21481 0.95552 1.01029 0.94968 1.21624 0.96574 1.01574 0.95588 1.21576 0.94573 0.99227 0.99526 1.22275 0.99705 0.99453 0.86560 1.61820 1.01238 1.51545 1.09934 1.21983 0.91936 0.95188 0.96423 1.21400 0.93434 0.98324 0.99485 1.18857 0.93641 0.94610 0.93160 1.21645 0.98631 1.06315 1.31397 0.92035 1.26033 1.02741 0.96337 0.94745 1.70135 1.31436 1.22134 1.33642 0.85423 0.78562 0.79234 0.77705 1.19395 1.20799 1.18563 0.93289 0.90768 0.95652 0.88906 0.91681 0.92436 0.96174 0.91205 0.86657 0.87053 0.90371 0.89006 0.84350 0.90397 0.88374 0.89489 0.91094 0.91617 0.90117 0.91721 0.94354 0.95375 0.93828 0.93212 0.92478 0.99727 1.00732 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.11 -2.69 5.93 30.60 0.18 -2.50 16 3 C -0.13 -3.92 4.85 30.60 0.15 -3.77 16 4 C 0.13 3.12 5.94 86.38 0.51 3.63 16 5 N -0.62 -15.98 2.24 -818.26 -1.83 -17.81 16 6 C 0.07 1.37 4.83 86.63 0.42 1.79 16 7 C 0.11 2.19 0.70 4.12 0.00 2.19 16 8 C -0.14 -3.58 5.44 30.41 0.17 -3.41 16 9 C 0.50 16.44 6.08 87.93 0.53 16.97 16 10 O -0.59 -25.23 17.59 -3.04 -0.05 -25.29 16 11 C -0.09 -1.15 4.65 30.42 0.14 -1.01 16 12 C -0.12 -1.23 5.82 30.72 0.18 -1.05 16 13 C -0.11 -1.72 6.07 30.65 0.19 -1.54 16 14 C 0.05 1.08 5.06 86.30 0.44 1.51 16 15 N -0.52 -14.04 4.46 -846.22 -3.77 -17.81 16 16 C 0.07 2.68 3.56 86.30 0.31 2.99 16 17 C -0.09 -3.93 5.07 30.60 0.16 -3.77 16 18 C 0.03 1.99 4.97 29.85 0.15 2.14 16 19 C -0.54 -32.48 9.11 25.60 0.23 -32.25 16 20 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 21 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 22 N -0.93 -59.76 13.29 21.45 0.28 -59.47 16 23 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.75 7.44 -2.39 -0.02 1.73 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.86 7.93 -2.39 -0.02 1.84 16 35 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.31 7.78 -2.39 -0.02 1.29 16 37 H 0.08 1.52 5.80 -2.39 -0.01 1.51 16 38 H 0.09 2.71 7.40 -2.38 -0.02 2.69 16 39 H 0.14 2.44 7.86 -2.39 -0.02 2.42 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 0.75 8.04 -2.39 -0.02 0.73 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.64 7.60 -2.39 -0.02 0.62 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.75 6.25 -2.39 -0.01 1.74 16 47 H 0.04 0.83 6.23 -2.39 -0.01 0.82 16 48 H 0.03 1.07 5.58 -2.39 -0.01 1.06 16 49 H 0.04 1.84 5.18 -2.39 -0.01 1.83 16 50 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.06 2.40 6.44 -2.39 -0.02 2.38 16 52 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 53 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 54 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.92 401.46 2.43 -76.49 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.84 Total: 17.33 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.93 Total: -21.39 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -5.32 Total: -95.10 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.92 2.43 -76.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040717.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.072 kcal (2) G-P(sol) polarization free energy of solvation -78.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds