Wall clock time and date at job start Tue Mar 31 2020 13:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.46920 * 124.34893 * 90.00420 * 5 4 3 7 7 C 1.53829 * 105.33730 * 196.40873 * 6 5 4 8 8 C 1.53969 * 102.47036 * 335.27821 * 7 6 5 9 9 C 1.34495 * 124.35446 * 269.69783 * 5 4 3 10 10 O 1.21282 * 124.93630 * 359.60287 * 9 5 4 11 11 C 1.52241 * 110.60468 * 217.42594 * 7 6 5 12 12 C 1.53250 * 109.36077 * 293.60492 * 11 7 6 13 13 C 1.53128 * 109.06668 * 303.54085 * 12 11 7 14 14 C 1.53037 * 109.38718 * 58.26353 * 13 12 11 15 15 N 1.45979 * 110.76072 * 93.37818 * 7 6 5 16 16 C 1.46891 * 110.99945 * 299.65211 * 15 7 6 17 17 C 1.52999 * 109.47090 * 169.99599 * 16 15 7 18 18 C 1.53008 * 109.47186 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47128 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00512 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00020 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00198 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47189 * 90.00277 * 23 21 19 25 25 H 1.48500 * 109.47046 * 210.00375 * 23 21 19 26 26 H 1.48495 * 109.46967 * 329.99836 * 23 21 19 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 35 35 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 36 36 H 1.08997 * 110.27007 * 315.37256 * 6 5 4 37 37 H 1.09000 * 110.27521 * 77.44337 * 6 5 4 38 38 H 1.09002 * 110.51365 * 142.77576 * 8 7 6 39 39 H 1.08996 * 110.50819 * 265.34538 * 8 7 6 40 40 H 1.09002 * 109.48710 * 53.56756 * 11 7 6 41 41 H 1.08995 * 109.49145 * 173.63400 * 11 7 6 42 42 H 1.09002 * 109.53958 * 183.66437 * 12 11 7 43 43 H 1.08996 * 109.54213 * 63.41668 * 12 11 7 44 44 H 1.09003 * 109.48539 * 298.28688 * 13 12 11 45 45 H 1.09001 * 109.50218 * 178.24178 * 13 12 11 46 46 H 1.08996 * 109.47318 * 180.23191 * 14 13 12 47 47 H 1.08996 * 109.47318 * 60.22716 * 14 13 12 48 48 H 1.09003 * 109.47221 * 289.99737 * 16 15 7 49 49 H 1.09003 * 109.47401 * 49.99939 * 16 15 7 50 50 H 1.08992 * 109.47652 * 299.99579 * 17 16 15 51 51 H 1.08996 * 109.47118 * 60.00455 * 17 16 15 52 52 H 1.08994 * 109.47515 * 300.00565 * 18 17 16 53 53 H 1.09004 * 109.46656 * 60.00129 * 18 17 16 54 54 H 0.96992 * 120.00282 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3343 3.6059 1.2127 7 6 4.4075 5.0695 0.7448 8 6 4.7928 4.9254 -0.7389 9 6 4.3174 3.5366 -1.1106 10 8 4.1870 3.1273 -2.2448 11 6 5.4893 5.8222 1.5072 12 6 5.0883 5.9321 2.9822 13 6 3.7192 6.6110 3.0792 14 6 2.6921 5.7986 2.2873 15 7 3.1084 5.7215 0.8797 16 6 2.0914 5.0418 0.0664 17 6 0.7068 5.5882 0.4200 18 6 -0.3525 4.8807 -0.4276 19 6 -1.7162 5.4194 -0.0797 20 1 -1.8174 6.1897 0.6705 21 6 -2.8349 4.9289 -0.7192 22 7 -2.7119 3.9905 -1.6324 23 14 -4.5253 5.5972 -0.2886 24 1 -4.8376 6.7551 -1.1642 25 1 -5.5435 4.5352 -0.4903 26 1 -4.5386 6.0323 1.1312 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9330 0.9287 0.8909 35 1 3.9338 0.9285 -0.8891 36 1 3.5276 3.4802 1.9348 37 1 5.2849 3.3014 1.6505 38 1 4.2851 5.6795 -1.3403 39 1 5.8730 5.0036 -0.8623 40 1 6.4332 5.2831 1.4261 41 1 5.6031 6.8209 1.0858 42 1 5.8286 6.5263 3.5179 43 1 5.0328 4.9355 3.4202 44 1 3.7826 7.6179 2.6666 45 1 3.4129 6.6647 4.1239 46 1 1.7178 6.2829 2.3520 47 1 2.6262 4.7928 2.7023 48 1 2.2930 5.2189 -0.9901 49 1 2.1215 3.9708 0.2675 50 1 0.5051 5.4111 1.4764 51 1 0.6766 6.6591 0.2189 52 1 -0.1508 5.0581 -1.4839 53 1 -0.3225 3.8097 -0.2268 54 1 -3.4989 3.6457 -2.0826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040718.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:34 Heat of formation + Delta-G solvation = -71.166684 kcal Electronic energy + Delta-G solvation = -30144.905276 eV Core-core repulsion = 26500.683764 eV Total energy + Delta-G solvation = -3644.221513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54323 -39.65060 -37.35355 -36.64704 -35.83174 -34.77260 -33.49840 -32.34931 -30.27681 -29.00468 -28.50473 -27.08206 -25.66173 -24.50980 -24.02270 -22.37583 -22.28692 -21.40722 -20.69666 -19.44608 -18.53514 -18.06579 -17.37723 -16.70075 -16.59427 -16.37245 -16.34652 -15.93284 -15.71693 -15.24502 -14.89743 -14.77622 -14.60307 -14.48636 -14.11384 -13.97486 -13.90230 -13.71616 -13.50222 -13.32991 -13.21614 -12.96637 -12.79898 -12.70570 -12.47132 -12.39437 -12.36820 -12.34741 -12.13262 -11.98287 -11.68032 -11.60338 -11.49414 -11.39865 -11.37981 -11.24736 -10.95235 -10.72008 -10.58436 -9.82346 -9.14068 -8.21838 -6.34415 1.36288 1.38380 1.49202 1.49315 2.01331 2.37662 2.79934 3.10645 3.30976 3.41239 3.77513 3.81351 3.85465 3.92481 4.00594 4.09735 4.17863 4.22789 4.27674 4.35431 4.37483 4.43288 4.48176 4.50689 4.60319 4.62509 4.65466 4.69459 4.74822 4.80601 4.85428 4.88914 4.92950 4.96581 5.03978 5.06346 5.13180 5.16018 5.16966 5.23296 5.24293 5.32702 5.38047 5.42227 5.46566 5.54059 5.59463 5.67445 5.80483 6.03401 6.09658 6.21354 6.27504 6.82049 7.09700 7.35163 8.89749 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010100 B = 0.004685 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.662651 B = 5975.619452 C = 7576.828776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.130 4.130 4 C 0.129 3.871 5 N -0.616 5.616 6 C 0.073 3.927 7 C 0.108 3.892 8 C -0.144 4.144 9 C 0.505 3.495 10 O -0.585 6.585 11 C -0.092 4.092 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.044 3.956 15 N -0.521 5.521 16 C 0.060 3.940 17 C -0.092 4.092 18 C 0.035 3.965 19 C -0.541 4.541 20 H 0.061 0.939 21 C 0.000 4.000 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.042 0.958 50 H 0.060 0.940 51 H 0.050 0.950 52 H -0.025 1.025 53 H -0.014 1.014 54 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.441 -1.566 13.485 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.169 4.169 4 C 0.007 3.993 5 N -0.348 5.348 6 C -0.051 4.051 7 C 0.017 3.983 8 C -0.184 4.184 9 C 0.295 3.705 10 O -0.466 6.466 11 C -0.130 4.130 12 C -0.154 4.154 13 C -0.150 4.150 14 C -0.083 4.083 15 N -0.245 5.245 16 C -0.068 4.068 17 C -0.130 4.130 18 C -0.003 4.003 19 C -0.579 4.579 20 H 0.079 0.921 21 C -0.197 4.197 22 N -0.572 5.572 23 Si 0.789 3.211 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.184 1.184 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.157 0.843 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.069 0.931 52 H -0.007 1.007 53 H 0.004 0.996 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.306 -1.474 12.640 23.964 hybrid contribution -1.882 -0.677 -0.579 2.082 sum 18.425 -2.151 12.061 22.126 Atomic orbital electron populations 1.21733 0.96735 1.01798 1.00637 1.21383 0.95040 0.94895 1.03267 1.21929 0.96307 0.98224 1.00425 1.21494 0.92653 0.81066 1.04085 1.48512 1.64508 1.14278 1.07488 1.23060 1.03344 0.91793 0.86885 1.21537 0.91571 0.91253 0.93939 1.22496 1.05032 0.93339 0.97497 1.21559 0.75870 0.89051 0.84058 1.90686 1.55943 1.76688 1.23299 1.21481 0.95556 1.01055 0.94888 1.21630 0.96575 1.01538 0.95670 1.21587 0.94601 0.99286 0.99479 1.22331 0.99881 0.99400 0.86702 1.61888 1.01233 1.51598 1.09738 1.22126 0.91447 0.96715 0.96463 1.21520 0.92742 0.99325 0.99429 1.18862 0.93786 0.94241 0.93397 1.21626 0.92733 1.21524 1.22000 0.92057 1.26007 1.03806 0.95162 0.94770 1.70134 1.30900 1.29330 1.26815 0.85452 0.78409 0.78029 0.79209 1.19853 1.20718 1.18354 0.95750 0.90812 0.93667 0.88946 0.91509 0.96071 0.92663 0.86724 0.91044 0.90486 0.87095 0.88826 0.84336 0.88379 0.90283 0.89469 0.91214 0.91544 0.90241 0.91317 0.94566 0.94198 0.94003 0.92117 0.93136 1.00711 0.99575 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.91 71.98 0.71 -4.02 16 2 C -0.11 -2.80 5.93 30.60 0.18 -2.62 16 3 C -0.13 -4.04 4.42 30.59 0.14 -3.90 16 4 C 0.13 3.19 5.94 86.38 0.51 3.70 16 5 N -0.62 -16.12 1.91 -818.56 -1.57 -17.69 16 6 C 0.07 1.39 4.74 86.58 0.41 1.80 16 7 C 0.11 2.19 0.71 4.06 0.00 2.19 16 8 C -0.14 -3.47 5.46 30.41 0.17 -3.31 16 9 C 0.51 16.28 6.52 87.93 0.57 16.85 16 10 O -0.59 -24.79 17.59 -3.04 -0.05 -24.85 16 11 C -0.09 -1.15 4.66 30.43 0.14 -1.01 16 12 C -0.12 -1.28 5.81 30.72 0.18 -1.10 16 13 C -0.11 -1.78 6.07 30.65 0.19 -1.59 16 14 C 0.04 1.03 4.58 86.30 0.40 1.42 16 15 N -0.52 -14.05 4.61 -846.53 -3.90 -17.96 16 16 C 0.06 2.22 3.79 86.30 0.33 2.55 16 17 C -0.09 -4.02 4.39 30.60 0.13 -3.88 16 18 C 0.03 1.96 4.97 29.85 0.15 2.10 16 19 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 20 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.00 0.02 5.46 84.65 0.46 0.48 16 22 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 23 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.79 7.64 -2.39 -0.02 1.77 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.92 7.92 -2.39 -0.02 1.90 16 36 H 0.08 1.58 5.83 -2.39 -0.01 1.56 16 37 H 0.11 1.36 7.79 -2.39 -0.02 1.34 16 38 H 0.09 2.67 7.30 -2.39 -0.02 2.65 16 39 H 0.14 2.37 7.86 -2.39 -0.02 2.35 16 40 H 0.10 0.75 8.05 -2.39 -0.02 0.73 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.67 7.58 -2.39 -0.02 0.65 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.91 5.90 -2.39 -0.01 1.90 16 47 H 0.04 0.83 6.19 -2.39 -0.01 0.82 16 48 H 0.04 1.69 6.62 -2.39 -0.02 1.67 16 49 H 0.04 1.58 3.95 -2.39 -0.01 1.57 16 50 H 0.06 2.49 6.23 -2.39 -0.01 2.47 16 51 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 52 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 53 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 54 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -77.66 399.62 2.54 -75.12 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.84 Total: 18.72 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 4.90 Total: -22.07 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -5.18 Total: -94.47 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.66 2.54 -75.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040718.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -77.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds