Wall clock time and date at job start Tue Mar 31 2020 15:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.53003 * 109.47169 * 240.00296 * 2 1 3 5 5 C 1.52997 * 109.47156 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47040 * 60.00114 * 5 4 2 7 7 C 1.53003 * 109.47053 * 299.99949 * 6 5 4 8 8 H 1.09001 * 109.46919 * 299.99571 * 7 6 5 9 9 N 1.46505 * 109.46913 * 180.02562 * 7 6 5 10 10 C 1.34779 * 120.00158 * 85.00097 * 9 7 6 11 11 O 1.21289 * 119.99691 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00322 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47117 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99778 * 189.99863 * 13 12 10 15 15 C 1.50703 * 109.47274 * 75.58255 * 14 13 12 16 16 H 1.07997 * 119.99452 * 355.52570 * 15 14 13 17 17 C 1.37874 * 119.99804 * 175.53352 * 15 14 13 18 18 N 1.31517 * 120.00285 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47053 * 89.99628 * 19 17 15 21 21 H 1.48496 * 109.47533 * 210.00138 * 19 17 15 22 22 H 1.48505 * 109.46869 * 330.00216 * 19 17 15 23 23 C 1.46896 * 111.00528 * 66.04355 * 13 12 10 24 24 C 1.52994 * 109.47135 * 195.92139 * 23 13 12 25 25 C 1.53012 * 117.49846 * 243.78432 * 24 23 13 26 26 C 1.53004 * 59.99972 * 252.51104 * 25 24 23 27 27 C 1.52997 * 109.47156 * 60.00122 * 7 6 5 28 28 H 1.08999 * 109.46987 * 180.02562 * 27 7 6 29 29 C 1.53000 * 109.47483 * 60.00013 * 27 7 6 30 30 H 1.09000 * 109.47186 * 299.99837 * 1 2 3 31 31 H 1.09001 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47723 * 59.99732 * 1 2 3 33 33 H 1.09001 * 109.46919 * 300.00180 * 4 2 1 34 34 H 1.08998 * 109.46820 * 59.99419 * 4 2 1 35 35 H 1.09000 * 109.47175 * 299.99885 * 5 4 2 36 36 H 1.08999 * 109.46987 * 179.97438 * 5 4 2 37 37 H 1.09003 * 109.47284 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47324 * 59.99862 * 6 5 4 39 39 H 0.96999 * 120.00030 * 264.99453 * 9 7 6 40 40 H 1.09004 * 109.46874 * 299.99619 * 12 10 9 41 41 H 1.09003 * 109.47208 * 59.99411 * 12 10 9 42 42 H 1.08996 * 109.47334 * 195.58506 * 14 13 12 43 43 H 1.09007 * 109.46948 * 315.58150 * 14 13 12 44 44 H 0.97002 * 119.99656 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.46758 * 315.92287 * 23 13 12 46 46 H 1.09006 * 109.47078 * 75.91854 * 23 13 12 47 47 H 1.09001 * 115.55474 * 29.49184 * 24 23 13 48 48 H 1.09002 * 117.49451 * 0.02562 * 25 24 23 49 49 H 1.08993 * 117.49572 * 145.02096 * 25 24 23 50 50 H 1.08993 * 117.49451 * 252.50750 * 26 25 24 51 51 H 1.09001 * 117.51515 * 107.48013 * 26 25 24 52 52 H 1.09000 * 109.47014 * 300.00217 * 29 27 7 53 53 H 1.09001 * 109.46632 * 59.99940 * 29 27 7 54 54 H 1.08994 * 109.47005 * 179.97438 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7206 -1.2496 6 6 4.0804 -1.4416 -0.0004 7 6 3.5704 -0.7204 1.2489 8 1 3.9335 0.3074 1.2487 9 7 4.0598 -1.4104 2.4450 10 6 5.2817 -1.1236 2.9360 11 8 5.9765 -0.2946 2.3872 12 6 5.7854 -1.8338 4.1660 13 7 7.1315 -1.3469 4.4958 14 6 7.7501 -2.1758 5.5391 15 6 8.2052 -3.4813 4.9394 16 1 7.9864 -3.7061 3.9060 17 6 8.9008 -4.3886 5.7101 18 7 9.1676 -4.1145 6.9684 19 14 9.4644 -6.0071 4.9669 20 1 10.8199 -5.8388 4.3842 21 1 9.5058 -7.0494 6.0238 22 1 8.5155 -6.4197 3.9017 23 6 7.0968 0.0656 4.8974 24 6 8.5120 0.6448 4.8481 25 6 9.1281 1.1179 6.1664 26 6 8.6730 2.1412 5.1239 27 6 2.0404 -0.7210 1.2492 28 1 1.6771 -0.2068 2.1390 29 6 1.5309 -2.1636 1.2494 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6765 -0.2074 -2.1392 35 1 3.9329 0.3072 -1.2498 36 1 3.9332 -1.2348 -2.1394 37 1 5.1705 -1.4416 -0.0008 38 1 3.7175 -2.4694 -0.0002 39 1 3.5043 -2.0736 2.8837 40 1 5.1130 -1.6356 5.0008 41 1 5.8228 -2.9066 3.9764 42 1 8.6076 -1.6506 5.9596 43 1 7.0222 -2.3718 6.3265 44 1 9.6566 -4.7531 7.5106 45 1 6.4527 0.6214 4.2159 46 1 6.7067 0.1454 5.9122 47 1 9.1792 0.1938 4.1136 48 1 8.5253 1.0160 7.0688 49 1 10.2008 0.9779 6.2993 50 1 9.4464 2.6744 4.5712 51 1 7.7706 2.7130 5.3401 52 1 1.8942 -2.6774 0.3594 53 1 1.8946 -2.6772 2.1394 54 1 0.4409 -2.1639 1.2501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081044124.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:05 Heat of formation + Delta-G solvation = -47.665236 kcal Electronic energy + Delta-G solvation = -28620.388486 eV Core-core repulsion = 24977.186073 eV Total energy + Delta-G solvation = -3643.202413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.41001 -40.01973 -38.70881 -36.74189 -35.42605 -34.54803 -33.51385 -31.70916 -29.70559 -29.23946 -27.95120 -26.61346 -25.89626 -23.57388 -23.16440 -22.82795 -22.18248 -21.23478 -21.05712 -19.42860 -18.51722 -18.15564 -17.24211 -16.95766 -16.51068 -16.35954 -16.07868 -15.71879 -15.60840 -15.33801 -14.99658 -14.93148 -14.56845 -14.34897 -14.13544 -13.90653 -13.47894 -13.43108 -13.26373 -13.15096 -12.97546 -12.76104 -12.65514 -12.53184 -12.48586 -12.36215 -12.26513 -12.24130 -12.09425 -11.94425 -11.57009 -11.43063 -11.31805 -11.11787 -11.09346 -10.99614 -10.81045 -10.60741 -10.41468 -9.93436 -8.98981 -8.16743 -6.26406 1.41176 1.43234 1.53469 1.72032 2.16681 2.42133 2.94253 3.14903 3.31670 3.66238 3.74013 3.85627 3.93980 3.99195 4.07339 4.15581 4.19426 4.20878 4.36856 4.38492 4.41907 4.49559 4.51292 4.57511 4.59232 4.71016 4.74661 4.76071 4.77220 4.85171 4.87518 4.99349 5.02856 5.04948 5.06296 5.14650 5.15810 5.19313 5.23742 5.25212 5.28831 5.31823 5.40264 5.42076 5.45294 5.50964 5.63444 5.68928 5.70256 6.10048 6.30255 6.59001 6.69027 6.88253 7.37143 7.42713 8.93322 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.003280 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.241407 B = 8533.268686 C =10086.724804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.154 3.846 8 H 0.061 0.939 9 N -0.718 5.718 10 C 0.519 3.481 11 O -0.557 6.557 12 C 0.044 3.956 13 N -0.531 5.531 14 C 0.213 3.787 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.964 3.036 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.096 3.904 24 C -0.152 4.152 25 C -0.184 4.184 26 C -0.155 4.155 27 C -0.084 4.084 28 H 0.075 0.925 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.017 0.983 43 H -0.033 1.033 44 H 0.264 0.736 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.106 0.894 51 H 0.103 0.897 52 H 0.064 0.936 53 H 0.054 0.946 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 7.796 -12.783 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.166 4.166 7 C 0.050 3.950 8 H 0.079 0.921 9 N -0.372 5.372 10 C 0.306 3.694 11 O -0.435 6.435 12 C -0.088 4.088 13 N -0.255 5.255 14 C 0.087 3.913 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.789 3.211 20 H -0.205 1.205 21 H -0.205 1.205 22 H -0.188 1.188 23 C -0.032 4.032 24 C -0.171 4.171 25 C -0.221 4.221 26 C -0.192 4.192 27 C -0.103 4.103 28 H 0.094 0.906 29 C -0.212 4.212 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.247 0.753 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.035 0.965 43 H -0.015 1.015 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.035 0.965 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.109 0.891 50 H 0.124 0.876 51 H 0.121 0.879 52 H 0.083 0.917 53 H 0.073 0.927 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.165 8.279 -13.430 24.060 hybrid contribution 0.281 -1.154 1.078 1.603 sum -17.884 7.126 -12.353 22.874 Atomic orbital electron populations 1.21842 0.93682 1.02581 1.02033 1.21084 0.96551 0.98892 0.93668 0.91798 1.21640 0.94003 1.01549 0.97682 1.21466 0.96768 1.00225 0.96715 1.21904 0.99318 1.00467 0.94943 1.20947 0.94652 0.95737 0.83696 0.92099 1.46059 1.17007 1.44051 1.30056 1.20733 0.81328 0.81950 0.85417 1.90632 1.56757 1.34911 1.61185 1.21886 0.90992 1.00925 0.94967 1.61677 1.18125 1.02042 1.43698 1.19411 0.92677 0.91674 0.87534 1.21429 1.35301 1.01785 0.97340 0.92534 1.25812 0.96033 1.02172 0.95177 1.70078 1.41545 1.37481 1.08050 0.85472 0.78712 0.78798 0.78155 1.20466 1.20539 1.18812 1.21608 0.95479 0.89172 0.96964 1.22072 0.97723 0.97418 0.99845 1.23002 1.01004 1.04874 0.93242 1.22994 1.03491 0.90761 1.01932 1.21326 0.91520 0.98220 0.99278 0.90617 1.22030 1.02131 0.94777 1.02218 0.92607 0.91590 0.92059 0.90768 0.90868 0.92722 0.91267 0.94798 0.90694 0.75308 0.91764 0.88032 0.96515 1.01538 0.92746 0.90358 0.96481 0.89857 0.89415 0.89144 0.87555 0.87875 0.91666 0.92723 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.84 71.98 0.64 -0.81 16 2 C -0.08 -1.10 2.49 -10.80 -0.03 -1.12 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.44 4.93 30.59 0.15 -1.29 16 5 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 6 C -0.13 -2.86 5.22 30.59 0.16 -2.70 16 7 C 0.15 3.45 2.15 44.99 0.10 3.54 16 8 H 0.06 1.67 7.58 -2.39 -0.02 1.66 16 9 N -0.72 -18.06 5.00 -442.52 -2.21 -20.27 16 10 C 0.52 18.04 7.35 87.66 0.64 18.69 16 11 O -0.56 -23.37 14.14 -3.06 -0.04 -23.42 16 12 C 0.04 1.67 5.27 85.56 0.45 2.12 16 13 N -0.53 -24.44 4.12 -905.37 -3.73 -28.17 16 14 C 0.21 11.46 4.59 85.56 0.39 11.85 16 15 C -0.52 -29.77 8.61 25.60 0.22 -29.55 16 16 H 0.06 3.23 7.66 -2.91 -0.02 3.20 16 17 C 0.01 0.36 5.46 84.65 0.46 0.82 16 18 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 19 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.10 3.92 4.80 86.30 0.41 4.33 16 24 C -0.15 -5.99 4.97 -10.79 -0.05 -6.05 16 25 C -0.18 -6.44 10.00 30.60 0.31 -6.13 16 26 C -0.15 -4.69 10.25 30.60 0.31 -4.37 16 27 C -0.08 -1.30 2.41 -10.80 -0.03 -1.32 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 C -0.15 -1.95 7.97 71.98 0.57 -1.38 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.58 6.43 -2.39 -0.02 0.57 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.87 6.43 -2.39 -0.02 0.86 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.52 6.43 -2.39 -0.02 1.51 16 39 H 0.41 8.13 6.87 -92.71 -0.64 7.50 16 40 H 0.06 2.21 8.12 -2.38 -0.02 2.19 16 41 H 0.10 4.01 7.32 -2.39 -0.02 3.99 16 42 H 0.02 0.98 6.97 -2.39 -0.02 0.96 16 43 H -0.03 -1.87 8.00 -2.38 -0.02 -1.89 16 44 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.08 3.15 5.81 -2.39 -0.01 3.14 16 46 H 0.02 0.69 7.79 -2.38 -0.02 0.67 16 47 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 48 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 49 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 50 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 51 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 52 H 0.06 0.84 4.81 -2.39 -0.01 0.83 16 53 H 0.05 0.69 6.51 -2.39 -0.02 0.68 16 54 H 0.07 0.75 6.43 -2.39 -0.02 0.74 16 Total: -1.00 -69.18 405.84 1.45 -67.73 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.23 Total: 28.31 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.90 Total: -15.20 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -5.66 Total: -104.06 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.42 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.18 1.45 -67.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044124.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.066 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds