Wall clock time and date at job start Tue Mar 31 2020 15:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46840 * 2 1 4 4 C 1.52998 * 109.47416 * 239.99517 * 2 1 3 5 5 C 1.52998 * 109.47427 * 300.00397 * 4 2 1 6 6 C 1.52998 * 109.46876 * 299.99514 * 5 4 2 7 7 C 1.52999 * 109.46999 * 60.00265 * 6 5 4 8 8 H 1.09000 * 109.47503 * 59.99916 * 7 6 5 9 9 N 1.46507 * 109.47153 * 180.02562 * 7 6 5 10 10 C 1.34781 * 119.99647 * 274.99849 * 9 7 6 11 11 O 1.21278 * 120.00277 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99434 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46476 * 185.65176 * 12 10 9 14 14 C 1.46901 * 110.99865 * 75.65381 * 13 12 10 15 15 C 1.50700 * 109.46945 * 189.99422 * 14 13 12 16 16 H 1.07995 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99691 * 180.27360 * 15 14 13 18 18 N 1.31518 * 120.00168 * 359.72773 * 17 15 14 19 19 Si 1.86805 * 119.99914 * 179.72867 * 17 15 14 20 20 H 1.48508 * 109.46953 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47318 * 119.99963 * 19 17 15 22 22 H 1.48498 * 109.46875 * 240.00377 * 19 17 15 23 23 C 1.46902 * 110.99892 * 199.60292 * 13 12 10 24 24 C 1.53004 * 109.46926 * 72.04277 * 23 13 12 25 25 C 1.52995 * 117.50084 * 244.25122 * 24 23 13 26 26 C 1.52995 * 117.49828 * 175.62759 * 24 23 13 27 27 C 1.53001 * 109.47418 * 299.99769 * 7 6 5 28 28 H 1.09000 * 109.46904 * 300.00514 * 27 7 6 29 29 C 1.52999 * 109.47418 * 179.97438 * 27 7 6 30 30 H 1.08996 * 109.47481 * 299.99867 * 1 2 3 31 31 H 1.08996 * 109.47346 * 60.00568 * 1 2 3 32 32 H 1.09007 * 109.46760 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46853 * 59.99981 * 4 2 1 34 34 H 1.08994 * 109.47088 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47203 * 59.99338 * 5 4 2 36 36 H 1.08996 * 109.46891 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.47376 * 300.00625 * 6 5 4 38 38 H 1.08996 * 109.47141 * 179.97438 * 6 5 4 39 39 H 0.96996 * 120.00334 * 95.00082 * 9 7 6 40 40 H 1.09000 * 109.47437 * 65.65569 * 12 10 9 41 41 H 1.09000 * 109.46916 * 305.64578 * 12 10 9 42 42 H 1.08998 * 109.47131 * 69.99706 * 14 13 12 43 43 H 1.08997 * 109.47178 * 309.99445 * 14 13 12 44 44 H 0.96994 * 119.99406 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.47183 * 192.04535 * 23 13 12 46 46 H 1.09004 * 109.47205 * 312.04682 * 23 13 12 47 47 H 1.08995 * 115.54819 * 29.96040 * 24 23 13 48 48 H 1.09002 * 117.49632 * 0.02562 * 25 24 23 49 49 H 1.08998 * 117.49941 * 145.01926 * 25 24 23 50 50 H 1.09001 * 117.50242 * 214.98168 * 26 24 23 51 51 H 1.09005 * 117.50129 * 359.97438 * 26 24 23 52 52 H 1.09004 * 109.47157 * 60.00272 * 29 27 7 53 53 H 1.08996 * 109.46713 * 179.97438 * 29 27 7 54 54 H 1.08992 * 109.47073 * 299.99682 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1638 1.2493 9 7 2.0189 -2.8540 2.4455 10 6 1.3425 -3.9110 2.9373 11 8 0.3290 -4.2905 2.3899 12 6 1.8451 -4.6206 4.1681 13 7 1.0181 -5.8083 4.4204 14 6 1.3506 -6.8899 3.4836 15 6 0.3295 -7.9915 3.6054 16 1 -0.4852 -7.8974 4.3081 17 6 0.4383 -9.1218 2.8233 18 7 1.4302 -9.2362 1.9673 19 14 -0.8231 -10.4907 2.9797 20 1 -1.8312 -10.1201 4.0053 21 1 -1.4987 -10.6930 1.6729 22 1 -0.1427 -11.7469 3.3849 23 6 1.1530 -6.2576 5.8125 24 6 0.4347 -5.2734 6.7379 25 6 1.2884 -4.4955 7.7413 26 6 0.3723 -5.6207 8.2267 27 6 2.0399 -0.7212 1.2493 28 1 3.1299 -0.7212 1.2493 29 6 1.5293 0.0002 2.4982 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2493 35 1 0.4401 -2.1638 -1.2491 36 1 1.8931 -2.6775 -2.1393 37 1 3.1301 -2.8849 0.0002 38 1 1.6764 -3.9125 0.0003 39 1 2.8292 -2.5503 2.8836 40 1 1.7865 -3.9486 5.0244 41 1 2.8805 -4.9246 4.0149 42 1 2.3394 -7.2834 3.7192 43 1 1.3471 -6.5021 2.4649 44 1 1.5068 -10.0316 1.4174 45 1 0.7089 -7.2473 5.9195 46 1 2.2090 -6.3024 6.0792 47 1 -0.4242 -4.7616 6.3041 48 1 2.3619 -4.6846 7.7419 49 1 0.9913 -3.4715 7.9677 50 1 -0.5276 -5.3369 8.7724 51 1 0.8425 -6.5505 8.5468 52 1 1.8923 -0.5135 3.3885 53 1 1.8930 1.0277 2.4984 54 1 0.4394 0.0002 2.4977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081044131.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:09 Heat of formation + Delta-G solvation = -50.196642 kcal Electronic energy + Delta-G solvation = -28881.576333 eV Core-core repulsion = 25238.264150 eV Total energy + Delta-G solvation = -3643.312183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.35159 -39.93061 -38.75506 -36.71928 -35.33537 -34.57852 -33.71359 -31.61016 -29.78564 -28.97441 -28.12396 -26.63030 -25.91080 -23.62642 -23.12743 -22.65292 -22.16362 -21.43141 -21.01616 -19.49816 -18.63205 -17.86741 -17.53914 -16.88159 -16.54600 -16.20003 -15.91051 -15.78518 -15.47155 -15.22383 -14.88355 -14.82059 -14.56530 -14.49191 -14.26291 -13.85657 -13.64552 -13.42211 -13.35308 -13.21726 -13.02298 -12.81773 -12.67485 -12.54408 -12.47937 -12.27832 -12.24098 -12.14786 -12.12819 -11.94978 -11.64054 -11.34740 -11.31066 -11.18478 -11.09996 -10.92140 -10.74676 -10.63113 -10.49188 -9.90246 -8.97917 -8.20840 -6.29006 1.36100 1.38603 1.51858 1.82088 2.21838 2.39784 2.97675 3.11667 3.30817 3.61073 3.77309 3.87925 4.00416 4.03085 4.14234 4.14707 4.18159 4.21457 4.32618 4.39343 4.41332 4.42780 4.48089 4.52401 4.55953 4.71067 4.74525 4.82577 4.85241 4.87239 4.93262 4.95866 5.05098 5.07436 5.07932 5.13843 5.16147 5.18884 5.23377 5.29011 5.31318 5.34456 5.35134 5.42047 5.44250 5.49271 5.63612 5.64625 5.70525 6.05972 6.37620 6.51772 6.79129 6.86062 7.39166 7.50055 8.91017 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010500 B = 0.003762 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.004511 B = 7441.249495 C = 9514.782319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.078 4.078 3 H 0.096 0.904 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.129 4.129 7 C 0.154 3.846 8 H 0.060 0.940 9 N -0.717 5.717 10 C 0.509 3.491 11 O -0.563 6.563 12 C 0.040 3.960 13 N -0.530 5.530 14 C 0.218 3.782 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.099 3.901 24 C -0.160 4.160 25 C -0.164 4.164 26 C -0.173 4.173 27 C -0.083 4.083 28 H 0.091 0.909 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.020 0.980 39 H 0.411 0.589 40 H 0.126 0.874 41 H 0.059 0.941 42 H -0.037 1.037 43 H -0.004 1.004 44 H 0.263 0.737 45 H 0.060 0.940 46 H 0.031 0.969 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.093 0.907 52 H 0.056 0.944 53 H 0.075 0.925 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 22.575 2.755 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.097 4.097 3 H 0.115 0.885 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.078 0.922 9 N -0.371 5.371 10 C 0.295 3.705 11 O -0.439 6.439 12 C -0.091 4.091 13 N -0.254 5.254 14 C 0.092 3.908 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.029 4.029 24 C -0.179 4.179 25 C -0.201 4.201 26 C -0.211 4.211 27 C -0.102 4.102 28 H 0.109 0.891 29 C -0.204 4.204 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.248 0.752 40 H 0.144 0.856 41 H 0.077 0.923 42 H -0.020 1.020 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.127 0.873 50 H 0.123 0.877 51 H 0.111 0.889 52 H 0.075 0.925 53 H 0.094 0.906 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.145 22.307 2.173 22.793 hybrid contribution 0.479 -1.599 -0.180 1.679 sum 4.624 20.708 1.993 21.311 Atomic orbital electron populations 1.22029 0.95970 1.01180 1.02235 1.21107 0.95472 0.99873 0.93229 0.88535 1.21579 1.01148 0.93762 0.98158 1.21518 1.00600 0.96958 0.96434 1.21890 1.01124 0.97978 0.95782 1.20986 0.98608 0.92088 0.83379 0.92218 1.45926 1.29466 1.31730 1.29997 1.21020 0.83560 0.80169 0.85720 1.90709 1.26847 1.65204 1.61157 1.21987 0.95623 0.94538 0.96993 1.61591 1.54452 1.05629 1.03773 1.19269 0.92865 0.88158 0.90478 1.21452 1.10766 1.01759 1.21450 0.92374 1.25898 0.97912 1.01169 0.94773 1.70099 1.32933 1.29461 1.25193 0.85368 0.78881 0.78522 0.78073 1.18832 1.20765 1.19707 1.21521 0.97140 0.97864 0.86375 1.22172 1.02280 1.02541 0.90880 1.23132 0.97640 0.97185 1.02163 1.22995 1.02574 1.00212 0.95286 1.21375 1.01248 0.91251 0.96350 0.89084 1.21866 1.01004 1.00837 0.96646 0.92101 0.91776 0.94293 0.90568 0.90785 0.92747 0.91810 0.90929 0.96124 0.75219 0.85582 0.92262 1.01962 0.98551 0.92831 0.92105 0.95056 0.88870 0.88281 0.87303 0.87689 0.88863 0.92518 0.90574 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.15 71.98 0.59 -2.15 16 2 C -0.08 -1.15 2.72 -10.79 -0.03 -1.18 16 3 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.11 -1.70 5.45 30.59 0.17 -1.53 16 5 C -0.12 -2.64 5.65 30.59 0.17 -2.47 16 6 C -0.13 -3.61 5.49 30.59 0.17 -3.45 16 7 C 0.15 3.99 1.62 44.99 0.07 4.06 16 8 H 0.06 1.94 5.87 -2.39 -0.01 1.93 16 9 N -0.72 -19.59 4.38 -442.52 -1.94 -21.53 16 10 C 0.51 19.57 7.34 87.66 0.64 20.21 16 11 O -0.56 -28.48 15.17 -3.02 -0.05 -28.52 16 12 C 0.04 1.44 5.32 85.56 0.45 1.89 16 13 N -0.53 -24.37 3.98 -905.35 -3.60 -27.98 16 14 C 0.22 12.54 4.37 85.56 0.37 12.91 16 15 C -0.52 -31.57 8.28 25.60 0.21 -31.35 16 16 H 0.06 3.54 7.26 -2.91 -0.02 3.52 16 17 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 18 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 19 Si 0.97 47.27 29.54 68.60 2.03 49.30 16 20 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 C 0.10 3.88 5.08 86.30 0.44 4.31 16 24 C -0.16 -4.92 4.98 -10.80 -0.05 -4.98 16 25 C -0.16 -3.62 9.97 30.59 0.30 -3.31 16 26 C -0.17 -4.21 10.25 30.59 0.31 -3.90 16 27 C -0.08 -1.39 2.07 -10.79 -0.02 -1.41 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 C -0.15 -2.22 8.68 71.98 0.62 -1.59 16 30 H 0.06 1.00 6.43 -2.39 -0.02 0.99 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.88 4.81 -2.38 -0.01 0.87 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.36 6.43 -2.39 -0.02 1.34 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.41 8.01 8.39 -92.71 -0.78 7.24 16 40 H 0.13 3.55 6.95 -2.39 -0.02 3.54 16 41 H 0.06 2.02 8.00 -2.39 -0.02 2.00 16 42 H -0.04 -2.24 8.12 -2.39 -0.02 -2.26 16 43 H 0.00 -0.24 6.88 -2.39 -0.02 -0.25 16 44 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.06 2.75 6.59 -2.39 -0.02 2.73 16 46 H 0.03 1.14 7.79 -2.39 -0.02 1.12 16 47 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.10 2.02 8.03 -2.39 -0.02 2.00 16 49 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 52 H 0.06 0.86 7.45 -2.39 -0.02 0.84 16 53 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.05 0.84 6.43 -2.39 -0.02 0.83 16 Total: -1.00 -78.97 408.13 1.69 -77.28 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.08 Total: 24.24 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 4.89 Total: -13.47 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -5.26 Total: -108.82 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.05 Total: -28.52 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -78.97 1.69 -77.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044131.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.080 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds