Wall clock time and date at job start Tue Mar 31 2020 15:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47116 * 2 1 4 4 C 1.52999 * 109.46891 * 239.99982 * 2 1 3 5 5 C 1.53001 * 109.46891 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47279 * 60.00430 * 5 4 2 7 7 C 1.53005 * 109.46677 * 300.00094 * 6 5 4 8 8 C 1.52998 * 109.46751 * 120.00391 * 2 1 3 9 9 H 1.09003 * 109.47214 * 299.99762 * 8 2 1 10 10 N 1.46496 * 109.47543 * 60.00125 * 8 2 1 11 11 C 1.46504 * 119.99989 * 6.05356 * 10 8 2 12 12 C 1.34778 * 120.00234 * 186.06143 * 10 8 2 13 13 O 1.21277 * 119.99844 * 359.97438 * 12 10 8 14 14 C 1.50697 * 119.99962 * 180.02562 * 12 10 8 15 15 N 1.46903 * 109.47109 * 179.97438 * 14 12 10 16 16 C 1.46896 * 111.00035 * 190.00120 * 15 14 12 17 17 C 1.50696 * 109.47641 * 75.59361 * 16 15 14 18 18 H 1.07995 * 120.00043 * 5.03212 * 17 16 15 19 19 C 1.37883 * 119.99757 * 185.02841 * 17 16 15 20 20 N 1.31506 * 120.00392 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99539 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47081 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46768 * 120.00332 * 21 19 17 24 24 H 1.48500 * 109.47065 * 239.99870 * 21 19 17 25 25 C 1.46902 * 111.00442 * 66.03573 * 15 14 12 26 26 C 1.52996 * 109.46977 * 189.63239 * 25 15 14 27 27 C 1.53010 * 117.49759 * 243.24886 * 26 25 15 28 28 C 1.53001 * 117.49606 * 174.62960 * 26 25 15 29 29 H 1.09004 * 109.47335 * 334.29950 * 1 2 3 30 30 H 1.09002 * 109.47346 * 94.30025 * 1 2 3 31 31 H 1.09004 * 109.47217 * 214.29785 * 1 2 3 32 32 H 1.09001 * 109.47498 * 300.00508 * 4 2 1 33 33 H 1.08999 * 109.46946 * 60.00220 * 4 2 1 34 34 H 1.09003 * 109.47067 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.47304 * 300.00000 * 5 4 2 36 36 H 1.09002 * 109.47304 * 59.99570 * 6 5 4 37 37 H 1.08993 * 109.47589 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47177 * 299.99357 * 7 6 5 39 39 H 1.09008 * 109.46974 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.47063 * 92.15241 * 11 10 8 41 41 H 1.08999 * 109.46650 * 332.15585 * 11 10 8 42 42 H 1.08998 * 109.47387 * 212.15327 * 11 10 8 43 43 H 1.08998 * 109.46813 * 299.99187 * 14 12 10 44 44 H 1.08997 * 109.47719 * 59.99473 * 14 12 10 45 45 H 1.09008 * 109.47161 * 195.59866 * 16 15 14 46 46 H 1.09003 * 109.46476 * 315.58939 * 16 15 14 47 47 H 0.97002 * 120.00659 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.46992 * 309.63873 * 25 15 14 49 49 H 1.08997 * 109.46465 * 69.63238 * 25 15 14 50 50 H 1.08995 * 115.55605 * 28.96258 * 26 25 15 51 51 H 1.08998 * 117.49671 * 0.02562 * 27 26 25 52 52 H 1.09001 * 117.49862 * 145.02367 * 27 26 25 53 53 H 1.09000 * 117.49934 * 214.97843 * 28 26 25 54 54 H 1.09005 * 117.49800 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4435 0.0002 7 6 3.5694 -0.7223 1.2495 8 6 2.0399 -0.7213 1.2492 9 1 1.6766 -0.2075 2.1392 10 7 1.5516 -2.1025 1.2492 11 6 0.8220 -2.6215 0.0896 12 6 1.7735 -2.8958 2.3159 13 8 2.3777 -2.4663 3.2757 14 6 1.2716 -4.3168 2.3156 15 7 1.6386 -4.9660 3.5812 16 6 1.3791 -6.4108 3.5264 17 6 2.4451 -7.0817 2.6991 18 1 3.2803 -6.5076 2.3261 19 6 2.3541 -8.4286 2.4186 20 7 1.3369 -9.1277 2.8724 21 14 3.6752 -9.2601 1.3925 22 1 4.7038 -8.2612 1.0061 23 1 4.3105 -10.3424 2.1864 24 1 3.0618 -9.8380 0.1698 25 6 0.9361 -4.3474 4.7134 26 6 1.5158 -4.8795 6.0255 27 6 0.5829 -5.6798 6.9368 28 6 1.0018 -4.2609 7.3271 29 1 -0.3634 0.9260 0.4457 30 1 -0.3634 -0.0771 -1.0248 31 1 -0.3634 -0.8490 0.5791 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.9333 -1.2353 -2.1392 35 1 3.9337 0.3057 -1.2487 36 1 3.7157 -2.4710 0.0000 37 1 5.1694 -1.4443 0.0003 38 1 3.9332 0.3052 1.2498 39 1 3.9320 -1.2367 2.1396 40 1 1.5222 -3.0971 -0.5972 41 1 0.3159 -1.8005 -0.4184 42 1 0.0851 -3.3529 0.4214 43 1 0.1871 -4.3190 2.2069 44 1 1.7212 -4.8608 1.4849 45 1 1.3912 -6.8207 4.5364 46 1 0.4031 -6.5876 3.0742 47 1 1.2727 -10.0752 2.6748 48 1 1.0629 -3.2656 4.6724 49 1 -0.1249 -4.5911 4.6595 50 1 2.5633 -5.1785 5.9898 51 1 -0.4436 -5.8275 6.6013 52 1 1.0167 -6.5056 7.5006 53 1 1.7112 -4.1533 8.1477 54 1 0.2510 -3.4745 7.2486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514575.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:03 Heat of formation + Delta-G solvation = 5.231393 kcal Electronic energy + Delta-G solvation = -29655.677580 eV Core-core repulsion = 26014.768936 eV Total energy + Delta-G solvation = -3640.908643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95042 -39.85145 -38.57078 -36.68711 -35.46073 -34.55493 -33.65684 -31.86553 -29.66230 -29.14450 -27.93739 -26.69074 -25.86527 -23.86191 -23.19182 -22.86384 -22.19337 -21.25342 -20.83862 -19.74497 -18.53564 -17.95880 -17.19469 -16.91458 -16.62106 -16.29736 -16.02849 -15.83631 -15.36112 -15.32921 -14.94445 -14.84060 -14.63774 -14.35235 -14.19389 -14.02310 -13.50191 -13.42292 -13.25304 -13.10605 -12.98162 -12.91732 -12.73671 -12.66879 -12.49044 -12.36313 -12.34072 -12.27722 -12.20176 -11.94142 -11.60162 -11.39875 -11.14662 -11.11731 -11.04261 -10.92172 -10.71107 -10.57931 -10.25549 -9.50913 -8.97809 -8.17030 -6.26837 1.39246 1.41423 1.54199 1.71514 2.02614 2.41312 2.93456 3.14529 3.27964 3.55625 3.78839 3.83184 3.89245 3.95644 4.06930 4.16377 4.17639 4.21970 4.29452 4.37667 4.47549 4.49474 4.52564 4.56668 4.57704 4.59337 4.67793 4.71532 4.75651 4.78716 4.80913 4.88814 4.98962 5.02276 5.06507 5.07596 5.16806 5.18643 5.20620 5.24656 5.28358 5.32568 5.36059 5.39467 5.41911 5.43929 5.55029 5.69076 5.82944 6.11157 6.24424 6.50583 6.63039 6.88989 7.33029 7.42634 8.92836 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.004358 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.075163 B = 6423.227584 C = 8200.971616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.157 3.843 9 H 0.060 0.940 10 N -0.600 5.600 11 C 0.037 3.963 12 C 0.517 3.483 13 O -0.555 6.555 14 C 0.052 3.948 15 N -0.531 5.531 16 C 0.213 3.787 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.961 3.039 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.273 1.273 25 C 0.094 3.906 26 C -0.154 4.154 27 C -0.183 4.183 28 C -0.154 4.154 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.133 0.867 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.015 0.985 46 H -0.030 1.030 47 H 0.264 0.736 48 H 0.080 0.920 49 H 0.015 0.985 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.091 0.909 53 H 0.107 0.893 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 19.711 -8.220 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.106 4.106 3 H 0.114 0.886 4 C -0.189 4.189 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.169 4.169 8 C 0.054 3.946 9 H 0.078 0.922 10 N -0.334 5.334 11 C -0.104 4.104 12 C 0.305 3.695 13 O -0.433 6.433 14 C -0.079 4.079 15 N -0.256 5.256 16 C 0.087 3.913 17 C -0.558 4.558 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.570 5.570 21 Si 0.787 3.213 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.199 1.199 25 C -0.034 4.034 26 C -0.173 4.173 27 C -0.220 4.220 28 C -0.191 4.191 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.150 0.850 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.033 0.967 46 H -0.012 1.012 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.033 0.967 50 H 0.102 0.898 51 H 0.106 0.894 52 H 0.110 0.890 53 H 0.125 0.875 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.353 19.843 -7.654 21.398 hybrid contribution -0.050 -1.291 -0.213 1.310 sum -2.403 18.552 -7.868 20.294 Atomic orbital electron populations 1.22188 0.94092 1.02371 1.03273 1.21345 0.96423 0.99915 0.92936 0.88624 1.22556 0.95500 1.03631 0.97196 1.21472 0.96285 1.00602 0.96460 1.21432 0.99719 0.98920 0.95229 1.21842 0.95678 1.01323 0.98077 1.21040 0.93500 0.81087 0.98966 0.92222 1.47854 1.56276 1.12400 1.16912 1.23053 0.96775 1.02000 0.88523 1.20674 0.79126 0.87419 0.82255 1.90594 1.41612 1.75562 1.35504 1.21838 0.98857 0.92110 0.95128 1.61685 1.58073 1.04379 1.01427 1.19403 0.93596 0.82369 0.95922 1.21427 1.08108 0.93996 1.32237 0.92919 1.25773 0.97928 0.97884 0.97327 1.70073 1.31657 1.08233 1.47070 0.85455 0.79114 0.78253 0.78519 1.19385 1.20635 1.19875 1.21644 0.93151 0.99058 0.89506 1.22072 0.98739 1.05198 0.91295 1.23011 0.99672 0.95359 1.03966 1.22999 1.03382 0.95546 0.97191 0.92015 0.90014 0.92199 0.88837 0.89796 0.91635 0.91290 0.94101 0.92752 0.89939 0.94069 0.91781 0.84974 0.91639 0.92326 0.88651 0.96653 1.01244 0.92711 0.90192 0.96701 0.89798 0.89355 0.89043 0.87500 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.07 71.98 0.58 -1.42 16 2 C -0.09 -1.29 2.47 -10.79 -0.03 -1.31 16 3 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.15 -2.07 4.53 30.59 0.14 -1.93 16 5 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 6 C -0.12 -2.66 5.77 30.60 0.18 -2.49 16 7 C -0.13 -3.26 5.32 30.58 0.16 -3.10 16 8 C 0.16 3.58 2.20 44.97 0.10 3.68 16 9 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 10 N -0.60 -15.82 1.94 -822.84 -1.59 -17.42 16 11 C 0.04 0.74 7.04 127.77 0.90 1.64 16 12 C 0.52 18.58 7.04 87.66 0.62 19.20 16 13 O -0.55 -23.50 12.92 -3.02 -0.04 -23.54 16 14 C 0.05 2.05 3.86 85.56 0.33 2.38 16 15 N -0.53 -24.77 4.17 -905.39 -3.77 -28.54 16 16 C 0.21 11.52 4.62 85.56 0.40 11.92 16 17 C -0.52 -29.91 8.55 25.60 0.22 -29.69 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 19 C 0.01 0.52 5.46 84.66 0.46 0.99 16 20 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 21 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 C 0.09 3.89 4.87 86.30 0.42 4.31 16 26 C -0.15 -6.08 4.65 -10.79 -0.05 -6.13 16 27 C -0.18 -6.32 9.95 30.60 0.30 -6.02 16 28 C -0.15 -4.64 10.25 30.60 0.31 -4.33 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.71 7.62 -2.39 -0.02 0.69 16 31 H 0.06 0.92 5.49 -2.38 -0.01 0.90 16 32 H 0.09 1.38 3.24 -2.44 -0.01 1.37 16 33 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.04 1.13 7.44 -2.39 -0.02 1.11 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.36 6.62 -2.38 -0.02 1.35 16 40 H 0.06 1.26 6.67 -2.39 -0.02 1.25 16 41 H 0.13 1.87 2.77 -2.39 -0.01 1.86 16 42 H 0.06 1.36 6.53 -2.39 -0.02 1.34 16 43 H 0.06 2.13 7.38 -2.39 -0.02 2.12 16 44 H 0.10 3.99 7.39 -2.39 -0.02 3.97 16 45 H 0.02 0.89 6.63 -2.38 -0.02 0.88 16 46 H -0.03 -1.74 8.00 -2.39 -0.02 -1.76 16 47 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.08 3.29 5.79 -2.39 -0.01 3.28 16 49 H 0.01 0.60 7.86 -2.39 -0.02 0.59 16 50 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16 51 H 0.09 3.02 8.03 -2.39 -0.02 3.00 16 52 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 53 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 54 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -69.66 394.96 2.99 -66.67 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.86 Total: 25.32 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 5.22 Total: -13.90 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -5.08 Total: -101.23 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.04 Total: -23.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.66 2.99 -66.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514575.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.900 kcal (2) G-P(sol) polarization free energy of solvation -69.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds