Wall clock time and date at job start Tue Mar 31 2020 15:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47053 * 2 1 4 4 C 1.52994 * 109.47461 * 120.00030 * 2 1 3 5 5 C 1.53004 * 109.47260 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47231 * 300.00148 * 5 4 2 7 7 C 1.52999 * 109.46983 * 60.00067 * 6 5 4 8 8 C 1.52998 * 109.46906 * 240.00102 * 2 1 3 9 9 H 1.08999 * 109.47182 * 299.99819 * 8 2 1 10 10 N 1.46499 * 109.47354 * 59.99988 * 8 2 1 11 11 C 1.46505 * 120.00225 * 59.99515 * 10 8 2 12 12 C 1.34779 * 120.00249 * 240.00131 * 10 8 2 13 13 O 1.21288 * 119.99525 * 359.97438 * 12 10 8 14 14 C 1.50699 * 120.00310 * 179.97438 * 12 10 8 15 15 N 1.46896 * 109.47147 * 180.02562 * 14 12 10 16 16 C 1.46903 * 111.00232 * 170.00105 * 15 14 12 17 17 C 1.50704 * 109.46904 * 284.11986 * 16 15 14 18 18 H 1.08000 * 119.99856 * 4.77957 * 17 16 15 19 19 C 1.37869 * 119.99938 * 184.78650 * 17 16 15 20 20 N 1.31520 * 120.00030 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00178 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46896 * 59.99568 * 21 19 17 23 23 H 1.48497 * 109.47215 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47197 * 299.99926 * 21 19 17 25 25 C 1.46908 * 110.99957 * 293.95346 * 15 14 12 26 26 C 1.52994 * 109.47299 * 163.64632 * 25 15 14 27 27 C 1.52998 * 117.49882 * 245.59065 * 26 25 15 28 28 C 1.52994 * 117.50244 * 176.92990 * 26 25 15 29 29 H 1.09005 * 109.46907 * 300.00016 * 1 2 3 30 30 H 1.08995 * 109.47159 * 59.99910 * 1 2 3 31 31 H 1.08998 * 109.46619 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47012 * 59.99945 * 4 2 1 33 33 H 1.08994 * 109.47343 * 300.00198 * 4 2 1 34 34 H 1.09003 * 109.47281 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.46927 * 60.00169 * 5 4 2 36 36 H 1.08999 * 109.47182 * 299.99865 * 6 5 4 37 37 H 1.09007 * 109.47064 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.47327 * 59.99886 * 7 6 5 39 39 H 1.09005 * 109.46886 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.46531 * 90.00157 * 11 10 8 41 41 H 1.08991 * 109.47145 * 210.00435 * 11 10 8 42 42 H 1.09001 * 109.46680 * 330.00465 * 11 10 8 43 43 H 1.08999 * 109.47104 * 299.99714 * 14 12 10 44 44 H 1.08998 * 109.46999 * 59.99830 * 14 12 10 45 45 H 1.09002 * 109.46906 * 44.11518 * 16 15 14 46 46 H 1.08993 * 109.47042 * 164.11665 * 16 15 14 47 47 H 0.97002 * 120.00227 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.46538 * 283.64904 * 25 15 14 49 49 H 1.09003 * 109.46971 * 43.64555 * 25 15 14 50 50 H 1.08999 * 115.55149 * 31.25916 * 26 25 15 51 51 H 1.08996 * 117.49970 * 359.97438 * 27 26 25 52 52 H 1.09005 * 117.50034 * 145.02049 * 27 26 25 53 53 H 1.09002 * 117.50466 * 214.98251 * 28 26 25 54 54 H 1.09004 * 117.49674 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7217 1.2488 6 6 4.0796 -1.4433 -0.0005 7 6 3.5695 -0.7220 -1.2496 8 6 2.0399 -0.7212 -1.2493 9 1 1.6766 -1.7489 -1.2493 10 7 1.5516 -0.0306 -2.4454 11 6 1.9054 1.3720 -2.6773 12 6 0.7767 -0.6856 -3.3326 13 8 0.4841 -1.8469 -3.1408 14 6 0.2739 0.0250 -4.5628 15 7 -0.5427 -0.8982 -5.3621 16 6 -1.2422 -0.1848 -6.4390 17 6 -2.4084 0.5761 -5.8626 18 1 -2.5645 0.5969 -4.7941 19 6 -3.2761 1.2454 -6.6992 20 7 -3.0857 1.2203 -8.0003 21 14 -4.7220 2.1879 -5.9848 22 1 -4.2206 3.2437 -5.0688 23 1 -5.4965 2.8152 -7.0857 24 1 -5.5980 1.2546 -5.2320 25 6 0.2754 -1.9931 -5.9007 26 6 -0.6367 -3.1294 -6.3672 27 6 -0.5493 -4.4593 -5.6156 28 6 0.0246 -4.3396 -7.0296 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6767 -1.7489 1.2492 33 1 1.6768 -0.2075 2.1391 34 1 3.9335 -1.2352 2.1390 35 1 3.9338 0.3058 1.2486 36 1 3.7159 -2.4708 -0.0003 37 1 5.1696 -1.4433 -0.0009 38 1 3.9332 0.3055 -1.2499 39 1 3.9321 -1.2364 -2.1397 40 1 2.8323 1.4231 -3.2487 41 1 1.1070 1.8606 -3.2355 42 1 2.0404 1.8756 -1.7201 43 1 -0.3319 0.8811 -4.2658 44 1 1.1214 0.3679 -5.1562 45 1 -0.5553 0.5122 -6.9191 46 1 -1.6047 -0.9027 -7.1747 47 1 -3.6960 1.6915 -8.5889 48 1 0.8612 -1.6278 -6.7442 49 1 0.9464 -2.3611 -5.1245 50 1 -1.6151 -2.8246 -6.7385 51 1 0.1583 -4.5247 -4.7892 52 1 -1.4701 -5.0295 -5.4929 53 1 -0.5188 -4.8312 -7.8366 54 1 1.1097 -4.3264 -7.1328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514576.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:07 Heat of formation + Delta-G solvation = -36.709329 kcal Electronic energy + Delta-G solvation = -29217.561456 eV Core-core repulsion = 25574.834127 eV Total energy + Delta-G solvation = -3642.727329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.45140 -39.67548 -38.53682 -36.78078 -35.96224 -34.56520 -33.44862 -31.36795 -29.61224 -29.08759 -27.86670 -27.02658 -25.86111 -23.83894 -23.20813 -22.82071 -22.14352 -21.05053 -20.59803 -20.02109 -18.59352 -18.03122 -17.36235 -16.91285 -16.60957 -16.44596 -15.94149 -15.53168 -15.40918 -15.11990 -15.09675 -14.77329 -14.44535 -14.29008 -14.04598 -13.89545 -13.76641 -13.64824 -13.32052 -13.24406 -13.09717 -12.91137 -12.80843 -12.65442 -12.52488 -12.43451 -12.35714 -12.26956 -12.05922 -11.84377 -11.78286 -11.40634 -11.36329 -11.24282 -11.16145 -11.11572 -10.79846 -10.61482 -10.43865 -9.50836 -8.97315 -8.17791 -6.27906 1.40711 1.44108 1.51879 1.69552 1.99644 2.41167 2.90832 3.13681 3.33266 3.56012 3.79316 3.80848 3.93960 3.94515 4.06332 4.18704 4.20511 4.21565 4.27948 4.37624 4.47621 4.50496 4.52192 4.55194 4.56722 4.59238 4.68326 4.72813 4.74767 4.76881 4.79039 4.84480 4.93194 4.98910 5.03073 5.08052 5.14367 5.16341 5.20088 5.24114 5.27055 5.28363 5.30281 5.35227 5.41216 5.42648 5.56637 5.66517 5.73124 6.08286 6.24814 6.49201 6.60686 6.86134 7.30572 7.41318 8.92175 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.003860 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.256159 B = 7251.308836 C = 8869.929752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.145 3.855 9 H 0.067 0.933 10 N -0.609 5.609 11 C 0.069 3.931 12 C 0.517 3.483 13 O -0.557 6.557 14 C 0.051 3.949 15 N -0.530 5.530 16 C 0.212 3.788 17 C -0.520 4.520 18 H 0.056 0.944 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.275 1.275 25 C 0.096 3.904 26 C -0.159 4.159 27 C -0.164 4.164 28 C -0.164 4.164 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.060 0.940 45 H -0.031 1.031 46 H 0.012 0.988 47 H 0.264 0.736 48 H 0.017 0.983 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.089 0.911 52 H 0.093 0.907 53 H 0.104 0.896 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.253 -1.479 16.663 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.107 0.893 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.158 4.158 8 C 0.042 3.958 9 H 0.085 0.915 10 N -0.342 5.342 11 C -0.073 4.073 12 C 0.306 3.694 13 O -0.435 6.435 14 C -0.081 4.081 15 N -0.255 5.255 16 C 0.086 3.914 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.191 4.191 20 N -0.572 5.572 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.201 1.201 25 C -0.032 4.032 26 C -0.178 4.178 27 C -0.201 4.201 28 C -0.201 4.201 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.078 0.922 45 H -0.014 1.014 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.035 0.965 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.107 0.893 52 H 0.112 0.888 53 H 0.122 0.878 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.674 -2.218 16.896 23.153 hybrid contribution -0.658 0.813 -0.913 1.388 sum 15.016 -1.404 15.983 21.975 Atomic orbital electron populations 1.21738 0.96080 1.00774 1.01334 1.21425 0.94903 1.00582 0.94135 0.89330 1.21564 0.96355 1.00208 0.96671 1.21538 0.94520 1.01465 0.97696 1.21501 1.01048 0.98947 0.93789 1.21816 0.93229 1.02141 0.98581 1.21141 0.94517 0.96571 0.83570 0.91473 1.47944 1.50377 1.13416 1.22441 1.22006 1.01552 0.80125 1.03627 1.20738 0.77439 0.86680 0.84583 1.90609 1.57878 1.18271 1.76714 1.21860 0.96984 0.96105 0.93107 1.61668 1.28250 1.10890 1.24659 1.19417 0.92169 0.91331 0.88438 1.21365 1.10794 1.30241 0.93447 0.92602 1.25811 1.00621 0.97619 0.95037 1.70070 1.39170 1.44238 1.03733 0.85526 0.78894 0.78780 0.77960 1.18813 1.20707 1.20069 1.21594 0.93776 0.91225 0.96609 1.22090 1.00315 0.89901 1.05509 1.22884 1.02798 0.99289 0.95097 1.23031 1.00795 1.00346 0.95910 0.91256 0.94504 0.94688 0.92943 0.90425 0.90747 0.90768 0.92874 0.90305 0.90032 0.93090 0.91136 0.91285 0.88676 0.88263 0.92183 1.01377 0.96989 0.92670 0.96517 0.90517 0.90402 0.89256 0.88816 0.87761 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.04 71.98 0.65 -2.68 16 2 C -0.09 -1.70 2.09 -10.80 -0.02 -1.72 16 3 H 0.09 1.37 6.66 -2.39 -0.02 1.35 16 4 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 5 C -0.11 -1.35 5.92 30.60 0.18 -1.17 16 6 C -0.11 -1.62 5.92 30.59 0.18 -1.44 16 7 C -0.12 -2.08 5.20 30.58 0.16 -1.92 16 8 C 0.14 3.32 1.96 44.98 0.09 3.41 16 9 H 0.07 2.01 6.90 -2.39 -0.02 1.99 16 10 N -0.61 -15.97 2.00 -822.65 -1.64 -17.61 16 11 C 0.07 1.32 9.30 127.77 1.19 2.51 16 12 C 0.52 18.48 7.23 87.66 0.63 19.11 16 13 O -0.56 -23.60 13.81 -3.06 -0.04 -23.64 16 14 C 0.05 1.97 3.82 85.56 0.33 2.30 16 15 N -0.53 -24.75 4.11 -905.36 -3.73 -28.48 16 16 C 0.21 11.53 4.55 85.56 0.39 11.92 16 17 C -0.52 -29.88 8.62 25.60 0.22 -29.65 16 18 H 0.06 3.20 7.66 -2.91 -0.02 3.18 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 21 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 C 0.10 4.00 4.79 86.30 0.41 4.41 16 26 C -0.16 -6.39 5.58 -10.80 -0.06 -6.45 16 27 C -0.16 -5.57 10.18 30.62 0.31 -5.26 16 28 C -0.16 -5.05 10.25 30.62 0.31 -4.74 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.33 16 30 H 0.04 1.01 7.60 -2.39 -0.02 0.99 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.08 1.15 7.67 -2.39 -0.02 1.14 16 39 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.07 1.47 6.44 -2.39 -0.02 1.45 16 42 H 0.09 1.34 6.43 -2.39 -0.02 1.32 16 43 H 0.10 4.02 6.59 -2.39 -0.02 4.00 16 44 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 45 H -0.03 -1.79 8.00 -2.39 -0.02 -1.81 16 46 H 0.01 0.71 6.48 -2.39 -0.02 0.70 16 47 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 48 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 49 H 0.08 3.14 5.55 -2.39 -0.01 3.12 16 50 H 0.08 3.63 6.90 -2.39 -0.02 3.61 16 51 H 0.09 3.07 8.04 -2.39 -0.02 3.05 16 52 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 53 H 0.10 2.88 8.14 -2.39 -0.02 2.87 16 54 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -69.72 410.40 3.34 -66.38 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.84 Total: 24.49 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.60 Total: -11.99 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -5.08 Total: -101.84 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.04 Total: -23.64 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -69.72 3.34 -66.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514576.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.674 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds