Wall clock time and date at job start Tue Mar 31 2020 15:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47315 * 2 1 4 4 C 1.53001 * 109.47066 * 239.99962 * 2 1 3 5 5 C 1.52997 * 109.47315 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47141 * 59.99802 * 5 4 2 7 7 C 1.53007 * 109.46970 * 300.00070 * 6 5 4 8 8 C 1.52997 * 109.46996 * 60.00290 * 7 6 5 9 9 H 1.09000 * 109.47315 * 59.99665 * 8 7 6 10 10 N 1.46499 * 109.46934 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99740 * 63.40946 * 10 8 7 12 12 C 1.34777 * 120.00170 * 243.40223 * 10 8 7 13 13 O 1.21284 * 119.99845 * 4.42723 * 12 10 8 14 14 C 1.50693 * 119.99971 * 184.41954 * 12 10 8 15 15 N 1.46897 * 109.47067 * 176.61000 * 14 12 10 16 16 C 1.46898 * 111.00434 * 76.03196 * 15 14 12 17 17 C 1.50701 * 109.47063 * 190.00282 * 16 15 14 18 18 H 1.07996 * 120.00338 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99776 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47109 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47291 * 300.00359 * 21 19 17 24 24 H 1.48503 * 109.46957 * 60.00506 * 21 19 17 25 25 C 1.46906 * 110.99827 * 199.98551 * 15 14 12 26 26 C 1.53000 * 109.47245 * 64.32572 * 25 15 14 27 27 C 1.52996 * 117.50077 * 243.45513 * 26 25 15 28 28 C 1.52998 * 117.49704 * 174.83163 * 26 25 15 29 29 H 1.08998 * 109.47133 * 305.07143 * 1 2 3 30 30 H 1.09003 * 109.47235 * 65.06665 * 1 2 3 31 31 H 1.09001 * 109.47329 * 185.06782 * 1 2 3 32 32 H 1.09000 * 109.47085 * 300.00180 * 4 2 1 33 33 H 1.09008 * 109.47131 * 59.99964 * 4 2 1 34 34 H 1.08995 * 109.47393 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.46949 * 299.99967 * 5 4 2 36 36 H 1.09000 * 109.47065 * 60.00235 * 6 5 4 37 37 H 1.09002 * 109.46671 * 180.02562 * 6 5 4 38 38 H 1.08995 * 109.46683 * 299.99936 * 7 6 5 39 39 H 1.09001 * 109.46618 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.46812 * 270.00012 * 11 10 8 41 41 H 1.09000 * 109.47332 * 29.99473 * 11 10 8 42 42 H 1.08998 * 109.47377 * 149.99764 * 11 10 8 43 43 H 1.09002 * 109.47506 * 56.60629 * 14 12 10 44 44 H 1.09003 * 109.47354 * 296.60746 * 14 12 10 45 45 H 1.08996 * 109.47212 * 69.99929 * 16 15 14 46 46 H 1.09004 * 109.46690 * 310.00066 * 16 15 14 47 47 H 0.96999 * 120.00101 * 359.97438 * 20 19 17 48 48 H 1.09002 * 109.47129 * 184.32617 * 25 15 14 49 49 H 1.09003 * 109.47083 * 304.32292 * 25 15 14 50 50 H 1.08998 * 115.54907 * 29.16707 * 26 25 15 51 51 H 1.09003 * 117.49856 * 0.02562 * 27 26 25 52 52 H 1.08998 * 117.49963 * 145.02019 * 27 26 25 53 53 H 1.08998 * 117.50014 * 214.97692 * 28 26 25 54 54 H 1.09001 * 117.50051 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4434 0.0003 7 6 3.5694 -0.7221 1.2495 8 6 2.0395 -0.7216 1.2492 9 1 1.6758 -1.7491 1.2490 10 7 1.5512 -0.0314 2.4457 11 6 1.8429 1.3909 2.6412 12 6 0.8335 -0.7049 3.3664 13 8 0.6600 -1.8991 3.2453 14 6 0.2468 0.0259 4.5465 15 7 -0.5515 -0.9072 5.3527 16 6 0.3132 -1.7854 6.1520 17 6 -0.5172 -2.8801 6.7709 18 1 -1.5810 -2.9194 6.5890 19 6 0.0812 -3.8316 7.5693 20 7 1.3766 -3.7836 7.7912 21 14 -0.9483 -5.1882 8.3370 22 1 -0.0741 -6.0760 9.1449 23 1 -1.9864 -4.5869 9.2121 24 1 -1.6028 -5.9800 7.2646 25 6 -1.5019 -0.1838 6.2081 26 6 -2.5146 0.5569 5.3325 27 6 -2.5305 2.0849 5.4091 28 6 -3.6663 1.2755 6.0382 29 1 -0.3633 0.5905 0.8411 30 1 -0.3634 0.4332 -0.9319 31 1 -0.3634 -1.0236 0.0908 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1393 34 1 3.9333 -1.2353 -2.1391 35 1 3.9336 0.3057 -1.2488 36 1 3.7157 -2.4710 0.0000 37 1 5.1695 -1.4434 0.0006 38 1 3.9332 0.3054 1.2496 39 1 3.9328 -1.2359 2.1395 40 1 2.7816 1.4978 3.1849 41 1 1.9271 1.8812 1.6713 42 1 1.0374 1.8519 3.2127 43 1 -0.3900 0.8365 4.1920 44 1 1.0515 0.4363 5.1565 45 1 0.7930 -1.2041 6.9394 46 1 1.0758 -2.2265 5.5101 47 1 1.9111 -3.0789 7.3929 48 1 -2.0258 -0.8926 6.8494 49 1 -0.9616 0.5340 6.8254 50 1 -2.7240 0.0989 4.3659 51 1 -1.8192 2.5625 6.0830 52 1 -2.7503 2.6325 4.4927 53 1 -4.6334 1.2907 5.5355 54 1 -3.7028 1.2202 7.1262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514577.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:10 Heat of formation + Delta-G solvation = -43.742260 kcal Electronic energy + Delta-G solvation = -29268.770547 eV Core-core repulsion = 25625.738247 eV Total energy + Delta-G solvation = -3643.032300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47395 -39.75155 -38.73586 -36.87446 -36.01207 -34.78123 -33.48512 -31.44166 -29.47661 -28.85381 -27.91221 -27.07730 -25.85616 -23.87943 -23.20621 -22.97168 -22.22530 -21.27086 -20.64204 -20.05518 -19.04167 -18.14139 -17.44512 -16.79111 -16.67745 -16.19042 -15.79755 -15.60561 -15.52152 -15.35164 -15.07728 -14.95652 -14.48134 -14.41526 -14.15699 -13.82465 -13.81523 -13.58224 -13.42409 -13.32005 -13.17680 -13.03658 -12.85653 -12.73311 -12.53778 -12.48093 -12.33203 -12.11824 -12.09688 -11.94124 -11.83488 -11.41458 -11.30150 -11.21794 -11.18595 -10.88939 -10.80199 -10.63993 -10.50420 -9.55955 -9.11625 -8.69724 -6.37591 1.48334 1.58974 1.68082 1.78045 1.94754 2.54114 2.88880 3.11073 3.17141 3.52082 3.75764 3.78166 3.88889 3.91049 4.03813 4.06399 4.13440 4.15167 4.16239 4.25727 4.31431 4.42909 4.43976 4.47248 4.48297 4.52105 4.63570 4.69187 4.73952 4.77390 4.78825 4.81349 4.87902 4.91193 4.96988 5.02225 5.03039 5.11034 5.11632 5.14375 5.22967 5.25865 5.28858 5.32120 5.33361 5.38600 5.52469 5.68343 5.76066 5.99104 6.27140 6.38287 6.47076 6.62394 7.31840 7.41879 8.68725 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.003954 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.937201 B = 7080.352624 C = 8881.428863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.098 0.902 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.122 4.122 8 C 0.144 3.856 9 H 0.052 0.948 10 N -0.610 5.610 11 C 0.068 3.932 12 C 0.506 3.494 13 O -0.568 6.568 14 C 0.044 3.956 15 N -0.527 5.527 16 C 0.205 3.795 17 C -0.592 4.592 18 H 0.050 0.950 19 C -0.040 4.040 20 N -0.937 5.937 21 Si 1.121 2.879 22 H -0.280 1.280 23 H -0.262 1.262 24 H -0.277 1.277 25 C 0.101 3.899 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.170 4.170 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.033 0.967 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.056 0.944 45 H -0.046 1.046 46 H -0.005 1.005 47 H 0.249 0.751 48 H 0.059 0.941 49 H 0.025 0.975 50 H 0.096 0.904 51 H 0.096 0.904 52 H 0.114 0.886 53 H 0.109 0.891 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 18.027 -17.582 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.160 4.160 8 C 0.040 3.960 9 H 0.071 0.929 10 N -0.344 5.344 11 C -0.073 4.073 12 C 0.294 3.706 13 O -0.445 6.445 14 C -0.087 4.087 15 N -0.251 5.251 16 C 0.079 3.921 17 C -0.630 4.630 18 H 0.069 0.931 19 C -0.236 4.236 20 N -0.575 5.575 21 Si 0.941 3.059 22 H -0.205 1.205 23 H -0.187 1.187 24 H -0.202 1.202 25 C -0.026 4.026 26 C -0.183 4.183 27 C -0.200 4.200 28 C -0.207 4.207 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.146 0.854 44 H 0.074 0.926 45 H -0.028 1.028 46 H 0.013 0.987 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.043 0.957 50 H 0.114 0.886 51 H 0.115 0.885 52 H 0.132 0.868 53 H 0.127 0.873 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.056 15.790 -16.984 23.190 hybrid contribution 0.752 1.159 -0.003 1.381 sum 0.696 16.948 -16.986 24.006 Atomic orbital electron populations 1.21740 0.95426 1.00504 1.02096 1.21413 0.95487 1.00640 0.93131 0.88398 1.21594 0.96151 1.00143 0.97078 1.21525 0.94810 1.01556 0.97068 1.21520 1.01011 0.98765 0.94256 1.21834 0.93992 1.02113 0.98062 1.21123 0.94168 0.96325 0.84359 0.92915 1.47954 1.53443 1.11978 1.21039 1.22065 1.02001 0.79023 1.04227 1.21077 0.77965 0.87286 0.84259 1.90711 1.60020 1.17220 1.76578 1.21996 0.97808 0.95334 0.93549 1.61547 1.18339 1.19379 1.25785 1.19424 0.92060 0.91476 0.89174 1.22240 0.95996 1.13107 1.31659 0.93129 1.27448 0.97661 1.02458 0.96072 1.70923 1.06656 1.34825 1.45135 0.82909 0.73813 0.73104 0.76052 1.20545 1.18719 1.20230 1.21510 0.92686 0.94964 0.93469 1.22154 1.00533 0.94764 1.00835 1.23160 1.01476 0.91793 1.03533 1.23003 0.94032 1.03442 1.00248 0.93323 0.90548 0.95573 0.93546 0.89531 0.90695 0.90161 0.93688 0.90488 0.89411 0.94777 0.92141 0.88088 0.89935 0.85386 0.92632 1.02818 0.98737 0.94229 0.92269 0.95686 0.88555 0.88511 0.86773 0.87297 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.96 71.98 0.64 -2.30 16 2 C -0.09 -1.63 2.02 -10.80 -0.02 -1.65 16 3 H 0.10 1.34 6.56 -2.39 -0.02 1.32 16 4 C -0.11 -1.79 5.20 30.59 0.16 -1.63 16 5 C -0.11 -1.56 5.92 30.59 0.18 -1.37 16 6 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 7 C -0.12 -2.78 5.25 30.60 0.16 -2.62 16 8 C 0.14 3.82 1.96 44.99 0.09 3.91 16 9 H 0.05 1.92 6.92 -2.39 -0.02 1.90 16 10 N -0.61 -17.26 2.09 -822.60 -1.72 -18.98 16 11 C 0.07 1.20 9.50 127.77 1.21 2.42 16 12 C 0.51 20.10 7.39 87.65 0.65 20.75 16 13 O -0.57 -29.79 14.44 -3.04 -0.04 -29.83 16 14 C 0.04 1.63 3.88 85.56 0.33 1.96 16 15 N -0.53 -24.74 4.09 -905.36 -3.70 -28.45 16 16 C 0.21 11.95 3.64 85.56 0.31 12.26 16 17 C -0.59 -36.97 8.40 25.60 0.21 -36.76 16 18 H 0.05 3.15 7.16 -2.91 -0.02 3.13 16 19 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 20 N -0.94 -62.13 13.65 21.45 0.29 -61.83 16 21 Si 1.12 54.29 29.90 68.60 2.05 56.34 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C 0.10 4.06 5.09 86.30 0.44 4.50 16 26 C -0.16 -4.94 4.59 -10.80 -0.05 -4.99 16 27 C -0.16 -3.45 9.92 30.59 0.30 -3.15 16 28 C -0.17 -4.01 10.25 30.59 0.31 -3.69 16 29 H 0.05 1.07 7.77 -2.39 -0.02 1.05 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.54 7.76 -2.39 -0.02 1.53 16 39 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.16 6.26 -2.39 -0.01 1.14 16 42 H 0.08 1.27 6.35 -2.39 -0.02 1.26 16 43 H 0.13 3.69 5.78 -2.39 -0.01 3.68 16 44 H 0.06 1.99 7.98 -2.39 -0.02 1.97 16 45 H -0.05 -2.75 7.99 -2.39 -0.02 -2.77 16 46 H -0.01 -0.35 6.49 -2.38 -0.02 -0.37 16 47 H 0.25 16.88 7.22 -92.71 -0.67 16.21 16 48 H 0.06 2.73 6.67 -2.39 -0.02 2.71 16 49 H 0.03 0.96 7.87 -2.39 -0.02 0.94 16 50 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 51 H 0.10 1.96 8.03 -2.39 -0.02 1.94 16 52 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 53 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 54 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -83.50 409.64 3.39 -80.10 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.94 Total: 19.09 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 5.58 Total: -16.44 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -5.13 Total: -109.26 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.04 Total: -29.83 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 2.05 Total: 56.34 kcal Total: -83.50 3.39 -80.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514577.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.360 kcal (2) G-P(sol) polarization free energy of solvation -83.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds